Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02520 and DDA3937_RS02525 are separated by 139 nucleotides DDA3937_RS02525 and DDA3937_RS02530 are separated by 234 nucleotides DDA3937_RS02530 and DDA3937_RS02535 overlap by 16 nucleotides
DDA3937_RS02520: DDA3937_RS02520 - alkyl hydroperoxide reductase subunit F, at 557,186 to 558,748
_RS02520
DDA3937_RS02525: DDA3937_RS02525 - DUF1868 domain-containing protein, at 558,888 to 559,718
_RS02525
DDA3937_RS02530: DDA3937_RS02530 - acetyltransferase, at 559,953 to 560,633
_RS02530
DDA3937_RS02535: DDA3937_RS02535 - hydroxyisourate hydrolase, at 560,618 to 560,950
_RS02535
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 557.957 kb on + strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand at 558.216 kb on - strand, within DDA3937_RS02520 at 558.216 kb on - strand, within DDA3937_RS02520 at 558.250 kb on + strand, within DDA3937_RS02520 at 558.251 kb on - strand, within DDA3937_RS02520 at 558.469 kb on + strand, within DDA3937_RS02520 at 558.470 kb on + strand, within DDA3937_RS02520 at 558.485 kb on - strand, within DDA3937_RS02520 at 558.633 kb on + strand at 558.665 kb on + strand at 558.666 kb on - strand at 558.726 kb on - strand at 558.807 kb on + strand at 558.808 kb on - strand at 558.808 kb on - strand at 558.953 kb on + strand at 558.954 kb on - strand at 558.954 kb on - strand at 558.954 kb on - strand at 558.954 kb on - strand at 559.015 kb on + strand, within DDA3937_RS02525 at 559.016 kb on - strand, within DDA3937_RS02525 at 559.016 kb on - strand, within DDA3937_RS02525 at 559.045 kb on + strand, within DDA3937_RS02525 at 559.045 kb on + strand, within DDA3937_RS02525 at 559.046 kb on - strand, within DDA3937_RS02525 at 559.094 kb on + strand, within DDA3937_RS02525 at 559.094 kb on + strand, within DDA3937_RS02525 at 559.095 kb on - strand, within DDA3937_RS02525 at 559.108 kb on + strand, within DDA3937_RS02525 at 559.108 kb on + strand, within DDA3937_RS02525 at 559.112 kb on + strand, within DDA3937_RS02525 at 559.112 kb on + strand, within DDA3937_RS02525 at 559.113 kb on - strand, within DDA3937_RS02525 at 559.113 kb on - strand, within DDA3937_RS02525 at 559.250 kb on + strand, within DDA3937_RS02525 at 559.299 kb on - strand, within DDA3937_RS02525 at 559.299 kb on - strand, within DDA3937_RS02525 at 559.365 kb on + strand, within DDA3937_RS02525 at 559.365 kb on + strand, within DDA3937_RS02525 at 559.366 kb on - strand, within DDA3937_RS02525 at 559.411 kb on + strand, within DDA3937_RS02525 at 559.412 kb on - strand, within DDA3937_RS02525 at 559.412 kb on - strand, within DDA3937_RS02525 at 559.499 kb on + strand, within DDA3937_RS02525 at 559.523 kb on + strand, within DDA3937_RS02525 at 559.523 kb on + strand at 559.523 kb on + strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.664 kb on + strand at 559.665 kb on - strand at 559.665 kb on - strand at 559.669 kb on + strand at 559.670 kb on - strand at 559.689 kb on + strand at 559.689 kb on + strand at 559.690 kb on - strand at 559.690 kb on - strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.772 kb on + strand at 559.772 kb on + strand at 559.824 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 560.011 kb on + strand at 560.011 kb on + strand at 560.012 kb on - strand at 560.025 kb on - strand, within DDA3937_RS02530 at 560.061 kb on - strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.066 kb on - strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.126 kb on + strand, within DDA3937_RS02530 at 560.220 kb on + strand, within DDA3937_RS02530 at 560.231 kb on + strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.298 kb on - strand, within DDA3937_RS02530 at 560.581 kb on - strand at 560.586 kb on + strand at 560.631 kb on + strand at 560.632 kb on - strand at 560.635 kb on + strand at 560.635 kb on + strand at 560.674 kb on - strand, within DDA3937_RS02535 at 560.718 kb on + strand at 560.718 kb on + strand, within DDA3937_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 557,957 + DDA3937_RS02520 0.49 -1.4 557,958 - DDA3937_RS02520 0.49 -0.0 557,958 - DDA3937_RS02520 0.49 -0.3 558,215 + DDA3937_RS02520 0.66 -0.1 558,215 + DDA3937_RS02520 0.66 +0.8 558,215 + DDA3937_RS02520 0.66 -0.6 558,215 + +0.8 558,216 - DDA3937_RS02520 0.66 +2.2 558,216 - DDA3937_RS02520 0.66 +1.2 558,250 + DDA3937_RS02520 0.68 -1.4 558,251 - DDA3937_RS02520 0.68 +0.2 558,469 + DDA3937_RS02520 0.82 -1.1 558,470 + DDA3937_RS02520 0.82 -0.5 558,485 - DDA3937_RS02520 0.83 -1.3 558,633 + +0.3 558,665 + +0.2 558,666 - +1.1 558,726 - -0.5 558,807 + +0.7 558,808 - +0.9 558,808 - +0.9 558,953 + -0.4 558,954 - -0.3 558,954 - -0.0 558,954 - +1.8 558,954 - +0.6 559,015 + DDA3937_RS02525 0.15 +1.6 559,016 - DDA3937_RS02525 0.15 +0.9 559,016 - DDA3937_RS02525 0.15 +0.3 559,045 + DDA3937_RS02525 0.19 +0.3 559,045 + DDA3937_RS02525 0.19 +0.2 559,046 - DDA3937_RS02525 0.19 +1.0 559,094 + DDA3937_RS02525 0.25 +0.5 559,094 + DDA3937_RS02525 0.25 +1.3 559,095 - DDA3937_RS02525 0.25 -2.1 559,108 + DDA3937_RS02525 0.26 +2.4 559,108 + DDA3937_RS02525 0.26 +0.1 559,112 + DDA3937_RS02525 0.27 +1.7 559,112 + DDA3937_RS02525 0.27 +0.1 559,113 - DDA3937_RS02525 0.27 -0.6 559,113 - DDA3937_RS02525 0.27 +1.2 559,250 + DDA3937_RS02525 0.44 -1.6 559,299 - DDA3937_RS02525 0.49 +0.2 559,299 - DDA3937_RS02525 0.49 -1.3 559,365 + DDA3937_RS02525 0.57 +2.3 559,365 + DDA3937_RS02525 0.57 -1.3 559,366 - DDA3937_RS02525 0.58 -0.7 559,411 + DDA3937_RS02525 0.63 +0.3 559,412 - DDA3937_RS02525 0.63 +0.3 559,412 - DDA3937_RS02525 0.63 -0.3 559,499 + DDA3937_RS02525 0.74 +0.2 559,523 + DDA3937_RS02525 0.76 +0.6 559,523 + -0.4 559,523 + DDA3937_RS02525 0.76 +0.2 559,524 - DDA3937_RS02525 0.77 +0.7 559,524 - DDA3937_RS02525 0.77 -0.1 559,524 - DDA3937_RS02525 0.77 -0.4 559,664 + -0.7 559,665 - +0.9 559,665 - -0.4 559,669 + -0.4 559,670 - +0.4 559,689 + -0.2 559,689 + -1.0 559,690 - +0.4 559,690 - +0.0 559,718 + -0.3 559,718 + -0.6 559,718 + -1.7 559,718 + -1.1 559,718 + +0.1 559,719 - +1.5 559,719 - -0.2 559,719 - +0.4 559,719 - -1.1 559,719 - +1.0 559,719 - -0.1 559,719 - +0.5 559,719 - +0.2 559,745 + -2.3 559,745 + -0.2 559,745 + -1.6 559,745 + +0.4 559,745 + +0.6 559,746 - -0.3 559,746 - -1.9 559,746 - +0.1 559,746 - -1.0 559,746 - +0.6 559,746 - +0.4 559,746 - -0.0 559,746 - -1.7 559,746 - +1.7 559,749 + +0.2 559,749 + -0.6 559,749 + -1.5 559,749 + -0.2 559,750 - -0.1 559,750 - +0.8 559,750 - +2.2 559,755 + -0.8 559,755 + -0.7 559,755 + +0.5 559,755 + -0.4 559,755 + +0.2 559,755 + -0.0 559,756 - -0.0 559,756 - +1.0 559,756 - +0.6 559,772 + -0.8 559,772 + -1.0 559,824 - -0.5 559,953 - +0.8 559,953 - -1.1 559,953 - +0.0 560,011 + +0.5 560,011 + -2.1 560,012 - -0.4 560,025 - DDA3937_RS02530 0.11 +0.1 560,061 - DDA3937_RS02530 0.16 -0.1 560,065 + DDA3937_RS02530 0.16 -0.1 560,065 + DDA3937_RS02530 0.16 +0.3 560,066 - DDA3937_RS02530 0.17 -0.4 560,091 + DDA3937_RS02530 0.20 +0.6 560,091 + DDA3937_RS02530 0.20 +0.1 560,091 + DDA3937_RS02530 0.20 -0.8 560,091 + DDA3937_RS02530 0.20 -0.1 560,092 - DDA3937_RS02530 0.20 +0.6 560,092 - DDA3937_RS02530 0.20 -0.8 560,097 + DDA3937_RS02530 0.21 +0.2 560,097 + DDA3937_RS02530 0.21 +0.8 560,097 + DDA3937_RS02530 0.21 +0.7 560,097 + DDA3937_RS02530 0.21 -0.4 560,097 + DDA3937_RS02530 0.21 +0.1 560,097 + DDA3937_RS02530 0.21 +1.2 560,097 + DDA3937_RS02530 0.21 -0.7 560,097 + DDA3937_RS02530 0.21 +0.2 560,098 - DDA3937_RS02530 0.21 +0.9 560,098 - DDA3937_RS02530 0.21 +0.5 560,098 - DDA3937_RS02530 0.21 -1.6 560,098 - DDA3937_RS02530 0.21 -0.1 560,098 - DDA3937_RS02530 0.21 +0.4 560,126 + DDA3937_RS02530 0.25 -0.8 560,220 + DDA3937_RS02530 0.39 -0.8 560,231 + DDA3937_RS02530 0.41 +0.6 560,232 - DDA3937_RS02530 0.41 -0.0 560,232 - DDA3937_RS02530 0.41 +0.2 560,275 + DDA3937_RS02530 0.47 -2.3 560,275 + DDA3937_RS02530 0.47 -0.6 560,275 + DDA3937_RS02530 0.47 +0.5 560,276 - DDA3937_RS02530 0.47 +0.4 560,276 - DDA3937_RS02530 0.47 -0.0 560,276 - DDA3937_RS02530 0.47 -1.1 560,298 - DDA3937_RS02530 0.51 -0.1 560,581 - +0.0 560,586 + -0.9 560,631 + -0.4 560,632 - -0.4 560,635 + -0.7 560,635 + -0.5 560,674 - DDA3937_RS02535 0.17 +0.4 560,718 + +1.2 560,718 + DDA3937_RS02535 0.30 -2.0
Or see this region's nucleotide sequence