Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02490 and DDA3937_RS02495 are separated by 27 nucleotides DDA3937_RS02495 and DDA3937_RS02500 are separated by 250 nucleotides DDA3937_RS02500 and DDA3937_RS02505 are separated by 47 nucleotides DDA3937_RS02505 and DDA3937_RS02510 overlap by 4 nucleotides
DDA3937_RS02490: DDA3937_RS02490 - amidohydrolase, at 551,949 to 553,118
_RS02490
DDA3937_RS02495: DDA3937_RS02495 - hypothetical protein, at 553,146 to 553,388
_RS02495
DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454
_RS02500
DDA3937_RS02505: DDA3937_RS02505 - ABC transporter substrate-binding protein, at 554,502 to 555,443
_RS02505
DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438
_RS02510
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.946 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.972 kb on + strand, within DDA3937_RS02490 at 552.973 kb on - strand, within DDA3937_RS02490 at 553.037 kb on + strand at 553.049 kb on + strand at 553.128 kb on + strand at 553.128 kb on + strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.148 kb on - strand at 553.157 kb on + strand at 553.158 kb on - strand at 553.217 kb on + strand, within DDA3937_RS02495 at 553.415 kb on - strand at 553.415 kb on - strand at 553.467 kb on + strand at 553.468 kb on - strand at 553.468 kb on - strand at 553.473 kb on - strand at 553.516 kb on - strand at 553.516 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.670 kb on + strand at 553.671 kb on - strand at 553.693 kb on + strand at 553.694 kb on - strand at 553.694 kb on - strand at 553.719 kb on + strand at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 554.046 kb on - strand, within DDA3937_RS02500 at 554.226 kb on - strand, within DDA3937_RS02500 at 554.228 kb on + strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.338 kb on + strand, within DDA3937_RS02500 at 554.339 kb on - strand, within DDA3937_RS02500 at 554.436 kb on + strand at 554.436 kb on + strand at 554.437 kb on - strand at 554.450 kb on + strand at 554.479 kb on + strand at 554.479 kb on + strand at 554.700 kb on + strand, within DDA3937_RS02505 at 554.761 kb on - strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.884 kb on + strand, within DDA3937_RS02505 at 554.949 kb on + strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.085 kb on - strand, within DDA3937_RS02505 at 555.101 kb on + strand, within DDA3937_RS02505 at 555.123 kb on + strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.346 kb on - strand, within DDA3937_RS02505 at 555.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 552,763 - DDA3937_RS02490 0.70 -0.1 552,763 - DDA3937_RS02490 0.70 +0.4 552,946 - DDA3937_RS02490 0.85 -0.4 552,953 - DDA3937_RS02490 0.86 -0.2 552,953 - DDA3937_RS02490 0.86 +0.6 552,972 + DDA3937_RS02490 0.87 +0.1 552,973 - DDA3937_RS02490 0.88 -0.5 553,037 + -1.2 553,049 + -0.1 553,128 + +0.8 553,128 + +3.2 553,129 - -0.6 553,129 - -0.8 553,129 - -0.2 553,129 - +0.2 553,129 - +0.2 553,148 - -0.2 553,157 + -0.4 553,158 - -0.4 553,217 + DDA3937_RS02495 0.29 -0.2 553,415 - -0.5 553,415 - +0.5 553,467 + -0.4 553,468 - -1.0 553,468 - +2.2 553,473 - -0.7 553,516 - +0.1 553,516 - +0.4 553,525 - -0.4 553,525 - -0.2 553,525 - -0.9 553,525 - -0.7 553,670 + +0.2 553,671 - -0.3 553,693 + -0.0 553,694 - -0.1 553,694 - +0.2 553,719 + +1.7 553,945 + DDA3937_RS02500 0.38 -0.2 553,945 + DDA3937_RS02500 0.38 -0.7 553,945 + DDA3937_RS02500 0.38 +0.5 553,945 + DDA3937_RS02500 0.38 +0.3 553,946 - DDA3937_RS02500 0.38 +0.4 553,946 - DDA3937_RS02500 0.38 +1.4 553,946 - DDA3937_RS02500 0.38 -1.8 553,946 - DDA3937_RS02500 0.38 -0.6 553,946 - DDA3937_RS02500 0.38 -0.1 553,946 - DDA3937_RS02500 0.38 -0.8 553,946 - DDA3937_RS02500 0.38 +0.0 554,046 - DDA3937_RS02500 0.50 +0.3 554,226 - DDA3937_RS02500 0.72 +0.0 554,228 + DDA3937_RS02500 0.72 +0.4 554,229 - DDA3937_RS02500 0.72 +0.5 554,229 - DDA3937_RS02500 0.72 +0.9 554,229 - DDA3937_RS02500 0.72 +0.3 554,229 - DDA3937_RS02500 0.72 +0.0 554,334 + DDA3937_RS02500 0.85 +0.7 554,334 + DDA3937_RS02500 0.85 +0.3 554,334 + DDA3937_RS02500 0.85 +0.6 554,334 + DDA3937_RS02500 0.85 +0.5 554,334 + DDA3937_RS02500 0.85 -1.4 554,335 - DDA3937_RS02500 0.85 -0.4 554,335 - DDA3937_RS02500 0.85 -0.2 554,335 - DDA3937_RS02500 0.85 +0.4 554,335 - DDA3937_RS02500 0.85 -0.1 554,335 - DDA3937_RS02500 0.85 +0.2 554,335 - DDA3937_RS02500 0.85 -0.9 554,335 - DDA3937_RS02500 0.85 +0.3 554,335 - DDA3937_RS02500 0.85 -0.6 554,335 - DDA3937_RS02500 0.85 +1.2 554,335 - DDA3937_RS02500 0.85 +0.3 554,338 + DDA3937_RS02500 0.86 -0.7 554,339 - DDA3937_RS02500 0.86 +1.2 554,436 + +1.0 554,436 + +0.2 554,437 - -0.5 554,450 + -1.1 554,479 + -0.5 554,479 + -0.8 554,700 + DDA3937_RS02505 0.21 +0.4 554,761 - DDA3937_RS02505 0.27 -1.1 554,820 + DDA3937_RS02505 0.34 +0.3 554,820 + DDA3937_RS02505 0.34 -1.1 554,821 - DDA3937_RS02505 0.34 -0.4 554,821 - DDA3937_RS02505 0.34 +0.2 554,821 - DDA3937_RS02505 0.34 -0.4 554,884 + DDA3937_RS02505 0.41 +0.7 554,949 + DDA3937_RS02505 0.47 +0.1 555,045 - DDA3937_RS02505 0.58 +1.0 555,045 - DDA3937_RS02505 0.58 -0.2 555,076 + DDA3937_RS02505 0.61 -0.8 555,076 + DDA3937_RS02505 0.61 -1.6 555,076 + DDA3937_RS02505 0.61 +0.1 555,085 - DDA3937_RS02505 0.62 +0.6 555,101 + DDA3937_RS02505 0.64 +0.7 555,123 + DDA3937_RS02505 0.66 +0.9 555,124 - DDA3937_RS02505 0.66 -0.3 555,124 - DDA3937_RS02505 0.66 -0.3 555,346 - DDA3937_RS02505 0.90 -0.1 555,360 + +0.3
Or see this region's nucleotide sequence