Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02165 and DDA3937_RS02170 are separated by 13 nucleotides DDA3937_RS02170 and DDA3937_RS02175 are separated by 92 nucleotides DDA3937_RS02175 and DDA3937_RS02180 are separated by 43 nucleotides DDA3937_RS02180 and DDA3937_RS02185 are separated by 50 nucleotides
DDA3937_RS02165: DDA3937_RS02165 - transketolase, at 480,985 to 481,905
_RS02165
DDA3937_RS02170: DDA3937_RS02170 - D-threitol dehydrogenase, at 481,919 to 482,722
_RS02170
DDA3937_RS02175: DDA3937_RS02175 - D-ribose ABC transporter substrate-binding protein, at 482,815 to 483,750
_RS02175
DDA3937_RS02180: DDA3937_RS02180 - DUF2291 domain-containing protein, at 483,794 to 484,426
_RS02180
DDA3937_RS02185: DDA3937_RS02185 - sugar ABC transporter ATP-binding protein, at 484,477 to 486,036
_RS02185
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 481.869 kb on - strand at 481.937 kb on + strand at 481.938 kb on - strand at 481.938 kb on - strand at 482.178 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.353 kb on + strand, within DDA3937_RS02170 at 482.384 kb on - strand, within DDA3937_RS02170 at 482.435 kb on + strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.837 kb on + strand at 482.838 kb on - strand at 482.838 kb on - strand at 482.847 kb on + strand at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.932 kb on + strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.980 kb on + strand, within DDA3937_RS02175 at 482.980 kb on + strand, within DDA3937_RS02175 at 482.981 kb on - strand, within DDA3937_RS02175 at 482.981 kb on - strand, within DDA3937_RS02175 at 482.982 kb on + strand, within DDA3937_RS02175 at 482.982 kb on + strand, within DDA3937_RS02175 at 482.983 kb on - strand, within DDA3937_RS02175 at 483.059 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.266 kb on - strand, within DDA3937_RS02175 at 483.266 kb on - strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.703 kb on - strand at 483.703 kb on - strand at 483.703 kb on - strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.794 kb on - strand at 483.794 kb on - strand at 483.794 kb on - strand at 483.907 kb on + strand, within DDA3937_RS02180 at 484.078 kb on - strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.227 kb on - strand, within DDA3937_RS02180 at 484.227 kb on - strand, within DDA3937_RS02180 at 484.443 kb on - strand at 484.485 kb on + strand at 484.486 kb on - strand at 484.486 kb on - strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.539 kb on - strand at 484.539 kb on - strand at 484.543 kb on - strand at 484.568 kb on + strand at 484.568 kb on + strand at 484.568 kb on + strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.604 kb on - strand at 484.612 kb on + strand at 484.613 kb on - strand at 484.620 kb on + strand at 484.621 kb on - strand at 484.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 481,869 - -0.3 481,937 + -0.0 481,938 - -0.6 481,938 - -0.8 482,178 + DDA3937_RS02170 0.32 +0.5 482,246 + DDA3937_RS02170 0.41 -0.0 482,246 + DDA3937_RS02170 0.41 +0.0 482,246 + DDA3937_RS02170 0.41 +0.2 482,353 + DDA3937_RS02170 0.54 -0.1 482,384 - DDA3937_RS02170 0.58 -0.3 482,435 + DDA3937_RS02170 0.64 +0.4 482,504 - DDA3937_RS02170 0.73 +2.0 482,504 - DDA3937_RS02170 0.73 -0.4 482,837 + -0.7 482,838 - -0.4 482,838 - -0.8 482,847 + -0.0 482,929 + DDA3937_RS02175 0.12 -1.1 482,929 + DDA3937_RS02175 0.12 +0.4 482,929 + DDA3937_RS02175 0.12 -0.5 482,929 + DDA3937_RS02175 0.12 -0.4 482,932 + DDA3937_RS02175 0.12 -1.0 482,933 - DDA3937_RS02175 0.13 +0.1 482,933 - DDA3937_RS02175 0.13 -1.0 482,933 - DDA3937_RS02175 0.13 -0.5 482,980 + DDA3937_RS02175 0.18 -0.9 482,980 + DDA3937_RS02175 0.18 +0.0 482,981 - DDA3937_RS02175 0.18 -0.5 482,981 - DDA3937_RS02175 0.18 -0.3 482,982 + DDA3937_RS02175 0.18 +0.6 482,982 + DDA3937_RS02175 0.18 +0.2 482,983 - DDA3937_RS02175 0.18 +1.5 483,059 + DDA3937_RS02175 0.26 -0.8 483,265 + DDA3937_RS02175 0.48 -0.2 483,265 + DDA3937_RS02175 0.48 -0.4 483,265 + DDA3937_RS02175 0.48 -0.1 483,265 + DDA3937_RS02175 0.48 +0.6 483,266 - DDA3937_RS02175 0.48 -1.4 483,266 - DDA3937_RS02175 0.48 -0.6 483,643 + DDA3937_RS02175 0.88 -2.2 483,643 + DDA3937_RS02175 0.88 +0.4 483,643 + DDA3937_RS02175 0.88 -1.2 483,643 + DDA3937_RS02175 0.88 -0.7 483,644 - DDA3937_RS02175 0.89 -1.6 483,644 - DDA3937_RS02175 0.89 -2.2 483,644 - DDA3937_RS02175 0.89 -0.4 483,644 - DDA3937_RS02175 0.89 -0.6 483,644 - DDA3937_RS02175 0.89 -1.8 483,703 - -1.2 483,703 - +0.2 483,703 - +0.0 483,793 + +0.7 483,793 + -1.4 483,793 + +0.0 483,793 + -2.6 483,793 + +0.9 483,794 - -2.1 483,794 - -0.7 483,794 - +0.0 483,907 + DDA3937_RS02180 0.18 +0.4 484,078 - DDA3937_RS02180 0.45 -0.0 484,167 + DDA3937_RS02180 0.59 -0.4 484,167 + DDA3937_RS02180 0.59 -0.2 484,167 + DDA3937_RS02180 0.59 -0.5 484,168 - DDA3937_RS02180 0.59 +0.6 484,168 - DDA3937_RS02180 0.59 -1.0 484,168 - DDA3937_RS02180 0.59 +0.3 484,168 - DDA3937_RS02180 0.59 -1.4 484,227 - DDA3937_RS02180 0.68 -0.4 484,227 - DDA3937_RS02180 0.68 -0.6 484,443 - +1.2 484,485 + -1.3 484,486 - -0.7 484,486 - +0.3 484,538 + -0.6 484,538 + -1.2 484,538 + -0.4 484,538 + -0.4 484,539 - +0.6 484,539 - -0.2 484,543 - +0.1 484,568 + +0.1 484,568 + +1.4 484,568 + +0.4 484,569 - +0.7 484,569 - +0.1 484,569 - -0.5 484,569 - -1.1 484,604 - -0.4 484,612 + +1.2 484,613 - +1.7 484,620 + +1.0 484,621 - +0.1 484,621 - +0.0
Or see this region's nucleotide sequence