Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02125

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02120 and DDA3937_RS02125 are separated by 216 nucleotidesDDA3937_RS02125 and DDA3937_RS02130 overlap by 38 nucleotides DDA3937_RS02120: DDA3937_RS02120 - HNH endonuclease, at 471,990 to 472,766 _RS02120 DDA3937_RS02125: DDA3937_RS02125 - MFS transporter, at 472,983 to 474,374 _RS02125 DDA3937_RS02130: DDA3937_RS02130 - PLP-dependent aminotransferase family protein, at 474,337 to 475,821 _RS02130 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -2 -1 0 1 2 3at 471.992 kb on - strandat 472.007 kb on + strandat 472.028 kb on + strandat 472.029 kb on - strandat 472.048 kb on + strandat 472.048 kb on + strandat 472.048 kb on + strandat 472.049 kb on - strandat 472.087 kb on + strand, within DDA3937_RS02120at 472.088 kb on - strand, within DDA3937_RS02120at 472.088 kb on - strand, within DDA3937_RS02120at 472.088 kb on - strand, within DDA3937_RS02120at 472.088 kb on - strand, within DDA3937_RS02120at 472.088 kb on - strand, within DDA3937_RS02120at 472.088 kb on - strandat 472.088 kb on - strand, within DDA3937_RS02120at 472.112 kb on + strand, within DDA3937_RS02120at 472.149 kb on + strand, within DDA3937_RS02120at 472.149 kb on + strand, within DDA3937_RS02120at 472.149 kb on + strand, within DDA3937_RS02120at 472.149 kb on + strand, within DDA3937_RS02120at 472.149 kb on + strand, within DDA3937_RS02120at 472.150 kb on - strand, within DDA3937_RS02120at 472.150 kb on - strand, within DDA3937_RS02120at 472.150 kb on - strand, within DDA3937_RS02120at 472.177 kb on - strand, within DDA3937_RS02120at 472.218 kb on + strand, within DDA3937_RS02120at 472.218 kb on + strand, within DDA3937_RS02120at 472.218 kb on + strand, within DDA3937_RS02120at 472.218 kb on + strand, within DDA3937_RS02120at 472.218 kb on + strand, within DDA3937_RS02120at 472.218 kb on + strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.219 kb on - strand, within DDA3937_RS02120at 472.271 kb on + strand, within DDA3937_RS02120at 472.272 kb on - strand, within DDA3937_RS02120at 472.272 kb on - strand, within DDA3937_RS02120at 472.287 kb on + strand, within DDA3937_RS02120at 472.313 kb on + strand, within DDA3937_RS02120at 472.314 kb on - strand, within DDA3937_RS02120at 472.408 kb on + strand, within DDA3937_RS02120at 472.658 kb on - strand, within DDA3937_RS02120at 472.658 kb on - strand, within DDA3937_RS02120at 472.701 kb on + strandat 472.711 kb on + strandat 472.711 kb on + strandat 472.712 kb on - strandat 472.712 kb on - strandat 472.712 kb on - strandat 472.712 kb on - strandat 472.719 kb on - strandat 472.731 kb on + strandat 472.731 kb on + strandat 472.732 kb on - strandat 472.789 kb on - strandat 472.813 kb on - strandat 472.813 kb on - strandat 472.813 kb on - strandat 472.813 kb on - strandat 472.918 kb on + strandat 472.980 kb on - strandat 473.184 kb on + strand, within DDA3937_RS02125at 473.185 kb on - strand, within DDA3937_RS02125at 473.257 kb on - strandat 473.257 kb on - strand, within DDA3937_RS02125at 473.280 kb on - strand, within DDA3937_RS02125at 473.404 kb on - strand, within DDA3937_RS02125at 473.414 kb on + strand, within DDA3937_RS02125at 473.414 kb on + strand, within DDA3937_RS02125at 473.414 kb on + strand, within DDA3937_RS02125at 473.415 kb on - strand, within DDA3937_RS02125at 473.415 kb on - strand, within DDA3937_RS02125at 473.415 kb on - strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.536 kb on + strand, within DDA3937_RS02125at 473.536 kb on + strand, within DDA3937_RS02125at 473.536 kb on + strand, within DDA3937_RS02125at 473.537 kb on - strand, within DDA3937_RS02125at 473.537 kb on - strand, within DDA3937_RS02125at 473.743 kb on - strand, within DDA3937_RS02125at 473.772 kb on + strand, within DDA3937_RS02125at 473.773 kb on - strand, within DDA3937_RS02125at 473.801 kb on + strand, within DDA3937_RS02125at 473.801 kb on + strand, within DDA3937_RS02125at 473.801 kb on + strand, within DDA3937_RS02125at 473.809 kb on + strand, within DDA3937_RS02125at 473.828 kb on + strand, within DDA3937_RS02125at 473.829 kb on - strand, within DDA3937_RS02125at 473.884 kb on - strand, within DDA3937_RS02125at 474.007 kb on + strand, within DDA3937_RS02125at 474.008 kb on - strand, within DDA3937_RS02125at 474.102 kb on - strand, within DDA3937_RS02125at 474.373 kb on - strandat 474.487 kb on + strand, within DDA3937_RS02130at 474.488 kb on - strand, within DDA3937_RS02130at 474.643 kb on + strand, within DDA3937_RS02130at 474.643 kb on + strand, within DDA3937_RS02130at 474.643 kb on + strand, within DDA3937_RS02130at 474.644 kb on - strand, within DDA3937_RS02130at 474.644 kb on - strand, within DDA3937_RS02130at 474.684 kb on - strand, within DDA3937_RS02130at 474.701 kb on + strand, within DDA3937_RS02130at 474.724 kb on - strand, within DDA3937_RS02130at 474.724 kb on - strand, within DDA3937_RS02130at 474.751 kb on - strand, within DDA3937_RS02130at 474.789 kb on + strand, within DDA3937_RS02130at 474.790 kb on - strand, within DDA3937_RS02130at 474.851 kb on + strand, within DDA3937_RS02130at 474.851 kb on + strand, within DDA3937_RS02130at 474.851 kb on + strand, within DDA3937_RS02130at 474.852 kb on - strand, within DDA3937_RS02130at 474.899 kb on + strand, within DDA3937_RS02130at 474.899 kb on + strand, within DDA3937_RS02130at 474.899 kb on + strand, within DDA3937_RS02130at 474.900 kb on - strand, within DDA3937_RS02130at 474.904 kb on - strand, within DDA3937_RS02130at 474.904 kb on - strand, within DDA3937_RS02130at 474.918 kb on + strand, within DDA3937_RS02130at 474.940 kb on + strand, within DDA3937_RS02130at 474.974 kb on + strand, within DDA3937_RS02130at 474.974 kb on + strand, within DDA3937_RS02130at 474.975 kb on - strand, within DDA3937_RS02130at 474.975 kb on - strand, within DDA3937_RS02130at 474.975 kb on - strand, within DDA3937_RS02130at 475.051 kb on + strand, within DDA3937_RS02130at 475.109 kb on + strand, within DDA3937_RS02130at 475.110 kb on - strand, within DDA3937_RS02130at 475.220 kb on + strandat 475.220 kb on + strand, within DDA3937_RS02130at 475.221 kb on - strand, within DDA3937_RS02130at 475.221 kb on - strand, within DDA3937_RS02130at 475.258 kb on + strand, within DDA3937_RS02130at 475.258 kb on + strand, within DDA3937_RS02130at 475.259 kb on - strand, within DDA3937_RS02130at 475.259 kb on - strand, within DDA3937_RS02130at 475.259 kb on - strand, within DDA3937_RS02130at 475.261 kb on - strand, within DDA3937_RS02130at 475.340 kb on + strand, within DDA3937_RS02130at 475.340 kb on + strand, within DDA3937_RS02130at 475.341 kb on - strand, within DDA3937_RS02130at 475.350 kb on + strand, within DDA3937_RS02130at 475.350 kb on + strand, within DDA3937_RS02130at 475.351 kb on - strand, within DDA3937_RS02130

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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471,992 - -1.0
472,007 + -0.2
472,028 + +0.0
472,029 - +0.1
472,048 + +0.7
472,048 + -0.1
472,048 + +1.7
472,049 - -0.4
472,087 + DDA3937_RS02120 0.12 +1.0
472,088 - DDA3937_RS02120 0.13 +0.9
472,088 - DDA3937_RS02120 0.13 +0.6
472,088 - DDA3937_RS02120 0.13 +0.2
472,088 - DDA3937_RS02120 0.13 +0.9
472,088 - DDA3937_RS02120 0.13 +0.9
472,088 - +0.6
472,088 - DDA3937_RS02120 0.13 -2.6
472,112 + DDA3937_RS02120 0.16 +2.8
472,149 + DDA3937_RS02120 0.20 -0.1
472,149 + DDA3937_RS02120 0.20 -0.9
472,149 + DDA3937_RS02120 0.20 -0.1
472,149 + DDA3937_RS02120 0.20 +0.3
472,149 + DDA3937_RS02120 0.20 -0.7
472,150 - DDA3937_RS02120 0.21 -1.4
472,150 - DDA3937_RS02120 0.21 -0.7
472,150 - DDA3937_RS02120 0.21 +0.2
472,177 - DDA3937_RS02120 0.24 -0.8
472,218 + DDA3937_RS02120 0.29 -2.4
472,218 + DDA3937_RS02120 0.29 +0.7
472,218 + DDA3937_RS02120 0.29 -0.8
472,218 + DDA3937_RS02120 0.29 +0.2
472,218 + DDA3937_RS02120 0.29 -0.1
472,218 + DDA3937_RS02120 0.29 +0.9
472,219 - DDA3937_RS02120 0.29 +0.2
472,219 - DDA3937_RS02120 0.29 -1.8
472,219 - DDA3937_RS02120 0.29 -0.4
472,219 - DDA3937_RS02120 0.29 -0.2
472,219 - DDA3937_RS02120 0.29 +0.5
472,219 - DDA3937_RS02120 0.29 +0.6
472,219 - DDA3937_RS02120 0.29 -1.1
472,271 + DDA3937_RS02120 0.36 +1.0
472,272 - DDA3937_RS02120 0.36 -0.6
472,272 - DDA3937_RS02120 0.36 -0.1
472,287 + DDA3937_RS02120 0.38 +0.4
472,313 + DDA3937_RS02120 0.42 +0.7
472,314 - DDA3937_RS02120 0.42 +0.4
472,408 + DDA3937_RS02120 0.54 -0.9
472,658 - DDA3937_RS02120 0.86 +0.9
472,658 - DDA3937_RS02120 0.86 +1.7
472,701 + +0.7
472,711 + -0.0
472,711 + +0.4
472,712 - -0.2
472,712 - +0.7
472,712 - +1.2
472,712 - -0.3
472,719 - +1.0
472,731 + +0.2
472,731 + +0.1
472,732 - -1.8
472,789 - -0.3
472,813 - -0.0
472,813 - -0.4
472,813 - -0.6
472,813 - +0.7
472,918 + +0.4
472,980 - -0.4
473,184 + DDA3937_RS02125 0.14 -0.1
473,185 - DDA3937_RS02125 0.15 +0.0
473,257 - +1.6
473,257 - DDA3937_RS02125 0.20 -0.8
473,280 - DDA3937_RS02125 0.21 -0.5
473,404 - DDA3937_RS02125 0.30 +0.2
473,414 + DDA3937_RS02125 0.31 +0.4
473,414 + DDA3937_RS02125 0.31 +0.1
473,414 + DDA3937_RS02125 0.31 +0.2
473,415 - DDA3937_RS02125 0.31 -0.0
473,415 - DDA3937_RS02125 0.31 +0.6
473,415 - DDA3937_RS02125 0.31 +0.2
473,534 + DDA3937_RS02125 0.40 +1.5
473,534 + DDA3937_RS02125 0.40 +0.4
473,534 + DDA3937_RS02125 0.40 +0.6
473,534 + DDA3937_RS02125 0.40 +0.7
473,535 - DDA3937_RS02125 0.40 +1.0
473,535 - DDA3937_RS02125 0.40 +0.1
473,535 - DDA3937_RS02125 0.40 +1.1
473,535 - DDA3937_RS02125 0.40 -0.6
473,535 - DDA3937_RS02125 0.40 -0.7
473,535 - DDA3937_RS02125 0.40 +0.2
473,536 + DDA3937_RS02125 0.40 +0.2
473,536 + DDA3937_RS02125 0.40 +1.1
473,536 + DDA3937_RS02125 0.40 -0.3
473,537 - DDA3937_RS02125 0.40 -0.9
473,537 - DDA3937_RS02125 0.40 -0.3
473,743 - DDA3937_RS02125 0.55 +0.8
473,772 + DDA3937_RS02125 0.57 -1.1
473,773 - DDA3937_RS02125 0.57 -0.2
473,801 + DDA3937_RS02125 0.59 +0.7
473,801 + DDA3937_RS02125 0.59 -1.8
473,801 + DDA3937_RS02125 0.59 -0.3
473,809 + DDA3937_RS02125 0.59 -0.1
473,828 + DDA3937_RS02125 0.61 +1.6
473,829 - DDA3937_RS02125 0.61 -0.5
473,884 - DDA3937_RS02125 0.65 -0.9
474,007 + DDA3937_RS02125 0.74 +0.5
474,008 - DDA3937_RS02125 0.74 -2.3
474,102 - DDA3937_RS02125 0.80 +0.1
474,373 - -1.4
474,487 + DDA3937_RS02130 0.10 -0.6
474,488 - DDA3937_RS02130 0.10 -2.0
474,643 + DDA3937_RS02130 0.21 -0.1
474,643 + DDA3937_RS02130 0.21 -0.4
474,643 + DDA3937_RS02130 0.21 -0.3
474,644 - DDA3937_RS02130 0.21 +0.6
474,644 - DDA3937_RS02130 0.21 -0.9
474,684 - DDA3937_RS02130 0.23 +0.2
474,701 + DDA3937_RS02130 0.25 +0.2
474,724 - DDA3937_RS02130 0.26 -0.5
474,724 - DDA3937_RS02130 0.26 +0.4
474,751 - DDA3937_RS02130 0.28 +0.2
474,789 + DDA3937_RS02130 0.30 +0.6
474,790 - DDA3937_RS02130 0.31 +0.1
474,851 + DDA3937_RS02130 0.35 -0.6
474,851 + DDA3937_RS02130 0.35 -0.1
474,851 + DDA3937_RS02130 0.35 +0.7
474,852 - DDA3937_RS02130 0.35 -1.8
474,899 + DDA3937_RS02130 0.38 -0.1
474,899 + DDA3937_RS02130 0.38 -1.5
474,899 + DDA3937_RS02130 0.38 +0.6
474,900 - DDA3937_RS02130 0.38 -0.8
474,904 - DDA3937_RS02130 0.38 -0.1
474,904 - DDA3937_RS02130 0.38 -0.4
474,918 + DDA3937_RS02130 0.39 +0.5
474,940 + DDA3937_RS02130 0.41 +0.8
474,974 + DDA3937_RS02130 0.43 -0.1
474,974 + DDA3937_RS02130 0.43 -1.9
474,975 - DDA3937_RS02130 0.43 -1.1
474,975 - DDA3937_RS02130 0.43 +0.8
474,975 - DDA3937_RS02130 0.43 -0.9
475,051 + DDA3937_RS02130 0.48 -0.6
475,109 + DDA3937_RS02130 0.52 -2.4
475,110 - DDA3937_RS02130 0.52 +1.2
475,220 + -0.8
475,220 + DDA3937_RS02130 0.59 -0.5
475,221 - DDA3937_RS02130 0.60 +0.1
475,221 - DDA3937_RS02130 0.60 -0.7
475,258 + DDA3937_RS02130 0.62 -0.3
475,258 + DDA3937_RS02130 0.62 +0.2
475,259 - DDA3937_RS02130 0.62 -0.0
475,259 - DDA3937_RS02130 0.62 +0.9
475,259 - DDA3937_RS02130 0.62 +0.2
475,261 - DDA3937_RS02130 0.62 -0.2
475,340 + DDA3937_RS02130 0.68 +0.5
475,340 + DDA3937_RS02130 0.68 -2.0
475,341 - DDA3937_RS02130 0.68 -0.3
475,350 + DDA3937_RS02130 0.68 +0.2
475,350 + DDA3937_RS02130 0.68 +0.6
475,351 - DDA3937_RS02130 0.68 +0.1

Or see this region's nucleotide sequence