Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02110 and DDA3937_RS02115 are separated by 70 nucleotides DDA3937_RS02115 and DDA3937_RS02120 are separated by 177 nucleotides DDA3937_RS02120 and DDA3937_RS02125 are separated by 216 nucleotides
DDA3937_RS02110: DDA3937_RS02110 - LysE family translocator, at 470,489 to 471,115
_RS02110
DDA3937_RS02115: DDA3937_RS02115 - amino acid transporter, at 471,186 to 471,812
_RS02115
DDA3937_RS02120: DDA3937_RS02120 - HNH endonuclease, at 471,990 to 472,766
_RS02120
DDA3937_RS02125: DDA3937_RS02125 - MFS transporter, at 472,983 to 474,374
_RS02125
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 471.024 kb on + strand, within DDA3937_RS02110 at 471.073 kb on + strand at 471.073 kb on + strand at 471.073 kb on + strand at 471.113 kb on + strand at 471.113 kb on + strand at 471.114 kb on - strand at 471.114 kb on - strand at 471.114 kb on - strand at 471.129 kb on + strand at 471.130 kb on - strand at 471.145 kb on + strand at 471.145 kb on + strand at 471.145 kb on + strand at 471.187 kb on + strand at 471.187 kb on + strand at 471.188 kb on - strand at 471.188 kb on - strand at 471.188 kb on - strand at 471.189 kb on + strand at 471.189 kb on + strand at 471.190 kb on - strand at 471.190 kb on - strand at 471.196 kb on + strand at 471.196 kb on + strand at 471.224 kb on + strand at 471.235 kb on + strand at 471.236 kb on - strand at 471.322 kb on + strand, within DDA3937_RS02115 at 471.322 kb on + strand, within DDA3937_RS02115 at 471.323 kb on - strand, within DDA3937_RS02115 at 471.323 kb on - strand, within DDA3937_RS02115 at 471.332 kb on + strand, within DDA3937_RS02115 at 471.333 kb on - strand, within DDA3937_RS02115 at 471.333 kb on - strand, within DDA3937_RS02115 at 471.361 kb on + strand, within DDA3937_RS02115 at 471.361 kb on + strand, within DDA3937_RS02115 at 471.362 kb on - strand, within DDA3937_RS02115 at 471.427 kb on + strand, within DDA3937_RS02115 at 471.427 kb on + strand, within DDA3937_RS02115 at 471.428 kb on - strand, within DDA3937_RS02115 at 471.556 kb on + strand, within DDA3937_RS02115 at 471.557 kb on - strand, within DDA3937_RS02115 at 471.557 kb on - strand, within DDA3937_RS02115 at 471.563 kb on - strand, within DDA3937_RS02115 at 471.782 kb on + strand at 471.782 kb on + strand at 471.782 kb on + strand at 471.800 kb on + strand at 471.800 kb on + strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.804 kb on + strand at 471.805 kb on - strand at 471.905 kb on - strand at 471.940 kb on - strand at 471.940 kb on - strand at 471.944 kb on + strand at 471.945 kb on - strand at 471.966 kb on - strand at 471.966 kb on - strand at 471.966 kb on - strand at 471.992 kb on - strand at 472.007 kb on + strand at 472.028 kb on + strand at 472.029 kb on - strand at 472.048 kb on + strand at 472.048 kb on + strand at 472.048 kb on + strand at 472.049 kb on - strand at 472.087 kb on + strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand at 472.088 kb on - strand, within DDA3937_RS02120 at 472.112 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.150 kb on - strand, within DDA3937_RS02120 at 472.150 kb on - strand, within DDA3937_RS02120 at 472.150 kb on - strand, within DDA3937_RS02120 at 472.177 kb on - strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.271 kb on + strand, within DDA3937_RS02120 at 472.272 kb on - strand, within DDA3937_RS02120 at 472.272 kb on - strand, within DDA3937_RS02120 at 472.287 kb on + strand, within DDA3937_RS02120 at 472.313 kb on + strand, within DDA3937_RS02120 at 472.314 kb on - strand, within DDA3937_RS02120 at 472.408 kb on + strand, within DDA3937_RS02120 at 472.658 kb on - strand, within DDA3937_RS02120 at 472.658 kb on - strand, within DDA3937_RS02120 at 472.701 kb on + strand at 472.711 kb on + strand at 472.711 kb on + strand at 472.712 kb on - strand at 472.712 kb on - strand at 472.712 kb on - strand at 472.712 kb on - strand at 472.719 kb on - strand at 472.731 kb on + strand at 472.731 kb on + strand at 472.732 kb on - strand at 472.789 kb on - strand at 472.813 kb on - strand at 472.813 kb on - strand at 472.813 kb on - strand at 472.813 kb on - strand at 472.918 kb on + strand at 472.980 kb on - strand at 473.184 kb on + strand, within DDA3937_RS02125 at 473.185 kb on - strand, within DDA3937_RS02125 at 473.257 kb on - strand at 473.257 kb on - strand, within DDA3937_RS02125 at 473.280 kb on - strand, within DDA3937_RS02125 at 473.404 kb on - strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.743 kb on - strand, within DDA3937_RS02125
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 471,024 + DDA3937_RS02110 0.85 -0.5 471,073 + +0.6 471,073 + -1.0 471,073 + +0.1 471,113 + -0.5 471,113 + -0.1 471,114 - -1.1 471,114 - -0.7 471,114 - -1.4 471,129 + +0.2 471,130 - +0.0 471,145 + -1.9 471,145 + -1.0 471,145 + -0.8 471,187 + -0.6 471,187 + -1.7 471,188 - +0.3 471,188 - -0.1 471,188 - -0.3 471,189 + +0.1 471,189 + +0.5 471,190 - -2.1 471,190 - -0.1 471,196 + -0.1 471,196 + -0.2 471,224 + -1.0 471,235 + -0.3 471,236 - -0.4 471,322 + DDA3937_RS02115 0.22 -0.2 471,322 + DDA3937_RS02115 0.22 +0.4 471,323 - DDA3937_RS02115 0.22 +1.2 471,323 - DDA3937_RS02115 0.22 -0.6 471,332 + DDA3937_RS02115 0.23 +0.6 471,333 - DDA3937_RS02115 0.23 -0.4 471,333 - DDA3937_RS02115 0.23 +0.8 471,361 + DDA3937_RS02115 0.28 +0.3 471,361 + DDA3937_RS02115 0.28 -0.1 471,362 - DDA3937_RS02115 0.28 -0.5 471,427 + DDA3937_RS02115 0.38 +1.0 471,427 + DDA3937_RS02115 0.38 -0.4 471,428 - DDA3937_RS02115 0.39 +0.6 471,556 + DDA3937_RS02115 0.59 -0.1 471,557 - DDA3937_RS02115 0.59 +3.4 471,557 - DDA3937_RS02115 0.59 -1.2 471,563 - DDA3937_RS02115 0.60 -2.5 471,782 + -1.1 471,782 + -2.1 471,782 + -0.4 471,800 + -0.3 471,800 + +0.1 471,801 - -0.4 471,801 - +0.4 471,801 - -0.4 471,801 - -0.7 471,801 - +0.5 471,804 + +0.2 471,805 - -0.6 471,905 - -0.2 471,940 - -0.4 471,940 - +0.1 471,944 + -0.9 471,945 - -0.2 471,966 - -1.0 471,966 - +0.5 471,966 - +0.2 471,992 - -1.0 472,007 + -0.2 472,028 + +0.0 472,029 - +0.1 472,048 + +0.7 472,048 + -0.1 472,048 + +1.7 472,049 - -0.4 472,087 + DDA3937_RS02120 0.12 +1.0 472,088 - DDA3937_RS02120 0.13 +0.9 472,088 - DDA3937_RS02120 0.13 +0.6 472,088 - DDA3937_RS02120 0.13 +0.2 472,088 - DDA3937_RS02120 0.13 +0.9 472,088 - DDA3937_RS02120 0.13 +0.9 472,088 - +0.6 472,088 - DDA3937_RS02120 0.13 -2.6 472,112 + DDA3937_RS02120 0.16 +2.8 472,149 + DDA3937_RS02120 0.20 -0.1 472,149 + DDA3937_RS02120 0.20 -0.9 472,149 + DDA3937_RS02120 0.20 -0.1 472,149 + DDA3937_RS02120 0.20 +0.3 472,149 + DDA3937_RS02120 0.20 -0.7 472,150 - DDA3937_RS02120 0.21 -1.4 472,150 - DDA3937_RS02120 0.21 -0.7 472,150 - DDA3937_RS02120 0.21 +0.2 472,177 - DDA3937_RS02120 0.24 -0.8 472,218 + DDA3937_RS02120 0.29 -2.4 472,218 + DDA3937_RS02120 0.29 +0.7 472,218 + DDA3937_RS02120 0.29 -0.8 472,218 + DDA3937_RS02120 0.29 +0.2 472,218 + DDA3937_RS02120 0.29 -0.1 472,218 + DDA3937_RS02120 0.29 +0.9 472,219 - DDA3937_RS02120 0.29 +0.2 472,219 - DDA3937_RS02120 0.29 -1.8 472,219 - DDA3937_RS02120 0.29 -0.4 472,219 - DDA3937_RS02120 0.29 -0.2 472,219 - DDA3937_RS02120 0.29 +0.5 472,219 - DDA3937_RS02120 0.29 +0.6 472,219 - DDA3937_RS02120 0.29 -1.1 472,271 + DDA3937_RS02120 0.36 +1.0 472,272 - DDA3937_RS02120 0.36 -0.6 472,272 - DDA3937_RS02120 0.36 -0.1 472,287 + DDA3937_RS02120 0.38 +0.4 472,313 + DDA3937_RS02120 0.42 +0.7 472,314 - DDA3937_RS02120 0.42 +0.4 472,408 + DDA3937_RS02120 0.54 -0.9 472,658 - DDA3937_RS02120 0.86 +0.9 472,658 - DDA3937_RS02120 0.86 +1.7 472,701 + +0.7 472,711 + -0.0 472,711 + +0.4 472,712 - -0.2 472,712 - +0.7 472,712 - +1.2 472,712 - -0.3 472,719 - +1.0 472,731 + +0.2 472,731 + +0.1 472,732 - -1.8 472,789 - -0.3 472,813 - -0.0 472,813 - -0.4 472,813 - -0.6 472,813 - +0.7 472,918 + +0.4 472,980 - -0.4 473,184 + DDA3937_RS02125 0.14 -0.1 473,185 - DDA3937_RS02125 0.15 +0.0 473,257 - +1.6 473,257 - DDA3937_RS02125 0.20 -0.8 473,280 - DDA3937_RS02125 0.21 -0.5 473,404 - DDA3937_RS02125 0.30 +0.2 473,414 + DDA3937_RS02125 0.31 +0.4 473,414 + DDA3937_RS02125 0.31 +0.1 473,414 + DDA3937_RS02125 0.31 +0.2 473,415 - DDA3937_RS02125 0.31 -0.0 473,415 - DDA3937_RS02125 0.31 +0.6 473,415 - DDA3937_RS02125 0.31 +0.2 473,534 + DDA3937_RS02125 0.40 +1.5 473,534 + DDA3937_RS02125 0.40 +0.4 473,534 + DDA3937_RS02125 0.40 +0.6 473,534 + DDA3937_RS02125 0.40 +0.7 473,535 - DDA3937_RS02125 0.40 +1.0 473,535 - DDA3937_RS02125 0.40 +0.1 473,535 - DDA3937_RS02125 0.40 +1.1 473,535 - DDA3937_RS02125 0.40 -0.6 473,535 - DDA3937_RS02125 0.40 -0.7 473,535 - DDA3937_RS02125 0.40 +0.2 473,536 + DDA3937_RS02125 0.40 +0.2 473,536 + DDA3937_RS02125 0.40 +1.1 473,536 + DDA3937_RS02125 0.40 -0.3 473,537 - DDA3937_RS02125 0.40 -0.9 473,537 - DDA3937_RS02125 0.40 -0.3 473,743 - DDA3937_RS02125 0.55 +0.8
Or see this region's nucleotide sequence