Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotides DDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides DDA3937_RS01740 and DDA3937_RS01745 are separated by 403 nucleotides
DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421
_RS01730
DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194
_RS01735
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
DDA3937_RS01745: DDA3937_RS01745 - ADP-ribose diphosphatase, at 387,203 to 387,838
_RS01745
Position (kb) 385
386
387 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 384.435 kb on - strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.907 kb on - strand, within DDA3937_RS01735 at 384.953 kb on + strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 385.058 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.138 kb on - strand at 385.254 kb on - strand at 385.259 kb on + strand at 385.260 kb on - strand at 385.262 kb on + strand at 385.262 kb on + strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.279 kb on + strand at 385.301 kb on + strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.323 kb on + strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.395 kb on + strand at 385.491 kb on + strand at 385.605 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.750 kb on - strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.911 kb on - strand, within DDA3937_RS01740 at 386.142 kb on + strand at 386.361 kb on - strand, within DDA3937_RS01740 at 386.387 kb on - strand, within DDA3937_RS01740 at 386.396 kb on + strand, within DDA3937_RS01740 at 386.420 kb on - strand, within DDA3937_RS01740 at 386.482 kb on + strand, within DDA3937_RS01740 at 386.586 kb on - strand, within DDA3937_RS01740 at 386.586 kb on - strand, within DDA3937_RS01740 at 386.592 kb on - strand, within DDA3937_RS01740 at 386.715 kb on - strand at 386.852 kb on + strand at 386.853 kb on - strand at 386.853 kb on - strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.890 kb on - strand at 386.936 kb on + strand at 386.941 kb on + strand at 386.942 kb on - strand at 386.942 kb on - strand at 386.942 kb on - strand at 386.945 kb on + strand at 387.036 kb on + strand at 387.066 kb on - strand at 387.119 kb on - strand at 387.119 kb on - strand at 387.119 kb on - strand at 387.202 kb on + strand at 387.218 kb on - strand at 387.218 kb on - strand at 387.230 kb on - strand at 387.236 kb on - strand at 387.249 kb on + strand at 387.249 kb on + strand at 387.250 kb on - strand at 387.256 kb on + strand at 387.275 kb on + strand, within DDA3937_RS01745 at 387.275 kb on + strand, within DDA3937_RS01745 at 387.275 kb on + strand, within DDA3937_RS01745 at 387.276 kb on - strand, within DDA3937_RS01745 at 387.395 kb on + strand, within DDA3937_RS01745 at 387.395 kb on + strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.590 kb on + strand, within DDA3937_RS01745 at 387.628 kb on + strand, within DDA3937_RS01745 at 387.629 kb on - strand, within DDA3937_RS01745 at 387.629 kb on - strand, within DDA3937_RS01745 at 387.731 kb on + strand, within DDA3937_RS01745 at 387.731 kb on + strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.741 kb on + strand, within DDA3937_RS01745 at 387.742 kb on - strand, within DDA3937_RS01745 at 387.754 kb on + strand, within DDA3937_RS01745
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 384,435 - +2.3 384,507 + -0.9 384,507 + -1.1 384,507 + -0.7 384,508 - -0.7 384,508 - -1.3 384,508 - +0.6 384,731 + DDA3937_RS01735 0.39 -0.6 384,731 + DDA3937_RS01735 0.39 +0.7 384,731 + DDA3937_RS01735 0.39 -0.2 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 -0.1 384,731 + DDA3937_RS01735 0.39 -0.9 384,731 + DDA3937_RS01735 0.39 -1.7 384,731 + DDA3937_RS01735 0.39 -0.1 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 -0.0 384,731 + DDA3937_RS01735 0.39 +0.8 384,731 + DDA3937_RS01735 0.39 +0.3 384,731 + DDA3937_RS01735 0.39 +0.5 384,732 - DDA3937_RS01735 0.39 -0.1 384,732 - DDA3937_RS01735 0.39 +0.0 384,732 - DDA3937_RS01735 0.39 -2.1 384,732 - DDA3937_RS01735 0.39 -0.1 384,732 - DDA3937_RS01735 0.39 +1.3 384,732 - DDA3937_RS01735 0.39 +0.0 384,732 - DDA3937_RS01735 0.39 +0.4 384,732 - DDA3937_RS01735 0.39 +0.1 384,732 - DDA3937_RS01735 0.39 +1.5 384,906 + DDA3937_RS01735 0.62 +0.3 384,906 + DDA3937_RS01735 0.62 -0.3 384,907 - DDA3937_RS01735 0.62 -0.1 384,953 + DDA3937_RS01735 0.68 +0.2 384,994 - DDA3937_RS01735 0.74 +0.3 384,994 - DDA3937_RS01735 0.74 +1.3 384,995 + DDA3937_RS01735 0.74 -0.3 384,995 + DDA3937_RS01735 0.74 -0.1 384,995 + DDA3937_RS01735 0.74 -0.4 384,996 - DDA3937_RS01735 0.74 -0.3 384,996 - DDA3937_RS01735 0.74 -0.6 384,996 - DDA3937_RS01735 0.74 -1.9 384,996 - DDA3937_RS01735 0.74 -0.6 384,996 - DDA3937_RS01735 0.74 +1.8 384,996 - DDA3937_RS01735 0.74 -1.7 385,058 + DDA3937_RS01735 0.82 +0.6 385,101 + DDA3937_RS01735 0.88 +0.2 385,101 + DDA3937_RS01735 0.88 -1.0 385,138 - +1.3 385,254 - -0.2 385,259 + -1.4 385,260 - -0.4 385,262 + +0.3 385,262 + +0.6 385,263 - -0.5 385,263 - +0.4 385,263 - +0.4 385,279 + -0.3 385,301 + -0.3 385,302 - -0.7 385,302 - +0.4 385,302 - -1.0 385,323 + -1.6 385,324 - -0.4 385,324 - +0.6 385,324 - +0.2 385,395 + -1.0 385,491 + -1.6 385,605 - DDA3937_RS01740 0.15 -0.2 385,612 - DDA3937_RS01740 0.16 -2.5 385,612 - DDA3937_RS01740 0.16 -1.1 385,750 - DDA3937_RS01740 0.26 -0.3 385,910 + DDA3937_RS01740 0.37 -1.9 385,910 + DDA3937_RS01740 0.37 -0.8 385,910 + DDA3937_RS01740 0.37 -0.5 385,910 + DDA3937_RS01740 0.37 -2.1 385,910 + DDA3937_RS01740 0.37 -0.1 385,910 + DDA3937_RS01740 0.37 -1.1 385,910 + DDA3937_RS01740 0.37 -1.1 385,911 - DDA3937_RS01740 0.37 -0.1 386,142 + -1.1 386,361 - DDA3937_RS01740 0.69 -0.9 386,387 - DDA3937_RS01740 0.71 +1.0 386,396 + DDA3937_RS01740 0.71 -0.8 386,420 - DDA3937_RS01740 0.73 -1.1 386,482 + DDA3937_RS01740 0.77 -0.0 386,586 - DDA3937_RS01740 0.85 -1.9 386,586 - DDA3937_RS01740 0.85 -0.3 386,592 - DDA3937_RS01740 0.85 -0.1 386,715 - -1.3 386,852 + -0.5 386,853 - -1.1 386,853 - -0.9 386,854 + -1.2 386,854 + +0.8 386,854 + -0.1 386,854 + -0.3 386,855 - -0.2 386,855 - +0.3 386,855 - +0.1 386,855 - +1.0 386,855 - -0.0 386,855 - +0.5 386,855 - -0.2 386,855 - +2.1 386,855 - -0.0 386,855 - -0.7 386,855 - -0.3 386,855 - -0.5 386,890 - +0.6 386,936 + -0.3 386,941 + -0.2 386,942 - +0.0 386,942 - -0.3 386,942 - -1.8 386,945 + -1.9 387,036 + -1.1 387,066 - +0.5 387,119 - -2.1 387,119 - +0.7 387,119 - -0.2 387,202 + -0.1 387,218 - +0.1 387,218 - -0.3 387,230 - -0.9 387,236 - +0.4 387,249 + +1.4 387,249 + -1.1 387,250 - -0.1 387,256 + -0.9 387,275 + DDA3937_RS01745 0.11 +0.2 387,275 + DDA3937_RS01745 0.11 -0.2 387,275 + DDA3937_RS01745 0.11 +0.0 387,276 - DDA3937_RS01745 0.11 +0.2 387,395 + DDA3937_RS01745 0.30 -0.8 387,395 + DDA3937_RS01745 0.30 +0.5 387,396 - DDA3937_RS01745 0.30 -0.6 387,396 - DDA3937_RS01745 0.30 -0.2 387,396 - DDA3937_RS01745 0.30 -1.1 387,396 - DDA3937_RS01745 0.30 -0.0 387,590 + DDA3937_RS01745 0.61 +2.8 387,628 + DDA3937_RS01745 0.67 -0.8 387,629 - DDA3937_RS01745 0.67 -0.5 387,629 - DDA3937_RS01745 0.67 -0.9 387,731 + DDA3937_RS01745 0.83 -0.7 387,731 + DDA3937_RS01745 0.83 -0.6 387,732 - DDA3937_RS01745 0.83 -0.6 387,732 - DDA3937_RS01745 0.83 -0.1 387,732 - DDA3937_RS01745 0.83 -0.5 387,732 - DDA3937_RS01745 0.83 -0.1 387,732 - DDA3937_RS01745 0.83 -0.3 387,732 - DDA3937_RS01745 0.83 -0.5 387,741 + DDA3937_RS01745 0.85 -0.2 387,742 - DDA3937_RS01745 0.85 -1.3 387,754 + DDA3937_RS01745 0.87 -1.3
Or see this region's nucleotide sequence