Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01725 and DDA3937_RS01730 are separated by 124 nucleotides DDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotides DDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides
DDA3937_RS01725: DDA3937_RS01725 - 4,5-DOPA dioxygenase extradiol, at 382,348 to 383,136
_RS01725
DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421
_RS01730
DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194
_RS01735
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.275 kb on + strand at 382.275 kb on + strand at 382.275 kb on + strand at 382.276 kb on - strand at 382.276 kb on - strand at 382.290 kb on - strand at 382.295 kb on + strand at 382.295 kb on + strand at 382.296 kb on - strand at 382.296 kb on - strand at 382.300 kb on + strand at 382.300 kb on + strand at 382.300 kb on + strand at 382.301 kb on - strand at 382.314 kb on - strand at 382.321 kb on - strand at 382.342 kb on - strand at 382.342 kb on - strand at 382.342 kb on - strand at 382.347 kb on + strand at 382.420 kb on + strand at 382.437 kb on + strand, within DDA3937_RS01725 at 382.475 kb on + strand, within DDA3937_RS01725 at 382.476 kb on - strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.528 kb on - strand, within DDA3937_RS01725 at 382.528 kb on - strand, within DDA3937_RS01725 at 382.651 kb on + strand, within DDA3937_RS01725 at 382.651 kb on + strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.725 kb on + strand, within DDA3937_RS01725 at 382.771 kb on + strand, within DDA3937_RS01725 at 382.777 kb on + strand, within DDA3937_RS01725 at 382.777 kb on + strand, within DDA3937_RS01725 at 382.791 kb on + strand, within DDA3937_RS01725 at 382.792 kb on - strand, within DDA3937_RS01725 at 382.792 kb on - strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.151 kb on - strand at 383.166 kb on + strand at 383.166 kb on + strand at 383.167 kb on - strand at 383.183 kb on - strand at 383.200 kb on + strand at 383.201 kb on - strand at 383.201 kb on - strand at 383.220 kb on + strand at 383.229 kb on + strand at 383.229 kb on + strand at 383.229 kb on + strand at 383.229 kb on + strand at 383.230 kb on - strand at 383.230 kb on - strand at 383.230 kb on - strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.234 kb on - strand at 383.234 kb on - strand at 383.236 kb on + strand at 383.236 kb on + strand at 383.236 kb on + strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.240 kb on + strand at 383.240 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.253 kb on + strand at 383.254 kb on - strand at 383.254 kb on - strand at 383.276 kb on - strand at 383.283 kb on + strand at 383.306 kb on - strand at 383.347 kb on + strand at 383.379 kb on + strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.422 kb on + strand, within DDA3937_RS01730 at 383.527 kb on - strand, within DDA3937_RS01730 at 383.563 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.803 kb on - strand, within DDA3937_RS01730 at 383.846 kb on + strand, within DDA3937_RS01730 at 383.847 kb on - strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.902 kb on + strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.970 kb on + strand, within DDA3937_RS01730 at 384.049 kb on - strand, within DDA3937_RS01730 at 384.064 kb on + strand, within DDA3937_RS01730 at 384.109 kb on - strand, within DDA3937_RS01730 at 384.129 kb on + strand, within DDA3937_RS01730 at 384.130 kb on - strand at 384.301 kb on + strand, within DDA3937_RS01730 at 384.301 kb on + strand, within DDA3937_RS01730 at 384.302 kb on - strand, within DDA3937_RS01730 at 384.309 kb on + strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.313 kb on - strand at 384.313 kb on - strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.435 kb on - strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.907 kb on - strand, within DDA3937_RS01735 at 384.953 kb on + strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 385.058 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.138 kb on - strand at 385.254 kb on - strand at 385.259 kb on + strand at 385.260 kb on - strand at 385.262 kb on + strand at 385.262 kb on + strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.279 kb on + strand at 385.301 kb on + strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.323 kb on + strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 382,275 + -0.2 382,275 + -0.1 382,275 + +0.7 382,276 - -0.7 382,276 - -0.3 382,290 - -0.5 382,295 + -0.1 382,295 + -0.7 382,296 - -1.7 382,296 - +0.2 382,300 + +0.5 382,300 + -0.5 382,300 + +0.6 382,301 - +1.5 382,314 - -1.1 382,321 - -0.1 382,342 - +1.1 382,342 - -0.2 382,342 - -0.1 382,347 + +0.1 382,420 + +0.6 382,437 + DDA3937_RS01725 0.11 -0.1 382,475 + DDA3937_RS01725 0.16 -0.9 382,476 - DDA3937_RS01725 0.16 +0.0 382,495 + DDA3937_RS01725 0.19 -1.1 382,495 + DDA3937_RS01725 0.19 -2.1 382,495 + DDA3937_RS01725 0.19 -0.0 382,495 + DDA3937_RS01725 0.19 +1.3 382,495 + DDA3937_RS01725 0.19 +0.3 382,495 + DDA3937_RS01725 0.19 +0.4 382,495 + DDA3937_RS01725 0.19 -1.3 382,496 - DDA3937_RS01725 0.19 -0.3 382,496 - DDA3937_RS01725 0.19 -0.1 382,496 - DDA3937_RS01725 0.19 +0.7 382,496 - DDA3937_RS01725 0.19 -0.7 382,528 - DDA3937_RS01725 0.23 -2.4 382,528 - DDA3937_RS01725 0.23 -1.1 382,651 + DDA3937_RS01725 0.38 -1.4 382,651 + DDA3937_RS01725 0.38 -0.1 382,652 - DDA3937_RS01725 0.39 +1.0 382,652 - DDA3937_RS01725 0.39 -0.2 382,652 - DDA3937_RS01725 0.39 -0.5 382,652 - DDA3937_RS01725 0.39 +0.4 382,725 + DDA3937_RS01725 0.48 -0.9 382,771 + DDA3937_RS01725 0.54 +0.6 382,777 + DDA3937_RS01725 0.54 +1.5 382,777 + DDA3937_RS01725 0.54 -1.1 382,791 + DDA3937_RS01725 0.56 -0.4 382,792 - DDA3937_RS01725 0.56 -1.3 382,792 - DDA3937_RS01725 0.56 -0.1 383,038 + DDA3937_RS01725 0.87 -0.6 383,038 + DDA3937_RS01725 0.87 -0.3 383,038 + DDA3937_RS01725 0.87 +0.3 383,038 + DDA3937_RS01725 0.87 -0.7 383,038 + DDA3937_RS01725 0.87 +0.2 383,038 + DDA3937_RS01725 0.87 +1.4 383,038 + DDA3937_RS01725 0.87 -0.5 383,038 + DDA3937_RS01725 0.87 +0.0 383,038 + DDA3937_RS01725 0.87 +0.7 383,038 + DDA3937_RS01725 0.87 +0.9 383,039 - DDA3937_RS01725 0.88 +0.4 383,039 - DDA3937_RS01725 0.88 +2.0 383,039 - DDA3937_RS01725 0.88 -0.5 383,039 - DDA3937_RS01725 0.88 +1.4 383,039 - DDA3937_RS01725 0.88 -0.3 383,151 - +0.3 383,166 + +0.2 383,166 + +0.5 383,167 - -0.3 383,183 - -1.1 383,200 + +0.9 383,201 - +0.2 383,201 - -0.3 383,220 + +0.2 383,229 + +0.6 383,229 + +0.4 383,229 + -0.3 383,229 + -1.0 383,230 - +0.1 383,230 - +0.3 383,230 - -0.5 383,233 + -0.7 383,233 + -0.8 383,233 + -2.1 383,233 + -2.6 383,233 + -0.3 383,234 - +0.0 383,234 - -1.6 383,236 + -0.0 383,236 + -0.0 383,236 + -0.4 383,237 - +0.1 383,237 - +1.0 383,237 - -0.4 383,237 - -0.2 383,237 - +0.1 383,237 - +0.1 383,237 - +0.5 383,237 - +0.7 383,240 + +0.7 383,240 + +0.0 383,249 + +0.3 383,249 + -0.5 383,249 + -0.7 383,249 + -0.7 383,249 + -0.9 383,249 + -0.8 383,249 + -0.2 383,249 + -1.6 383,250 - +0.4 383,250 - +0.3 383,250 - -0.2 383,250 - -0.3 383,250 - +0.9 383,250 - -0.5 383,250 - -0.1 383,250 - -0.1 383,250 - +0.0 383,253 + +0.1 383,254 - -1.3 383,254 - -0.4 383,276 - -0.7 383,283 + -1.5 383,306 - -0.2 383,347 + +0.7 383,379 + DDA3937_RS01730 0.10 +0.3 383,380 - DDA3937_RS01730 0.10 -0.7 383,380 - DDA3937_RS01730 0.10 +1.3 383,380 - DDA3937_RS01730 0.10 -0.9 383,380 - DDA3937_RS01730 0.10 -0.1 383,380 - DDA3937_RS01730 0.10 -0.2 383,422 + DDA3937_RS01730 0.14 -0.2 383,527 - DDA3937_RS01730 0.23 -0.1 383,563 - DDA3937_RS01730 0.26 -1.7 383,790 - DDA3937_RS01730 0.46 +0.4 383,790 - DDA3937_RS01730 0.46 -0.5 383,790 - DDA3937_RS01730 0.46 -0.6 383,802 + DDA3937_RS01730 0.47 +0.2 383,802 + DDA3937_RS01730 0.47 +0.8 383,803 - DDA3937_RS01730 0.47 -0.3 383,846 + DDA3937_RS01730 0.50 +0.4 383,847 - DDA3937_RS01730 0.50 -0.2 383,850 + DDA3937_RS01730 0.51 +1.8 383,850 + DDA3937_RS01730 0.51 -0.1 383,850 + DDA3937_RS01730 0.51 +0.4 383,851 - DDA3937_RS01730 0.51 -1.2 383,851 - DDA3937_RS01730 0.51 -0.3 383,851 - DDA3937_RS01730 0.51 -1.2 383,851 - DDA3937_RS01730 0.51 -0.6 383,851 - DDA3937_RS01730 0.51 -0.2 383,851 - DDA3937_RS01730 0.51 -0.6 383,851 - DDA3937_RS01730 0.51 -1.9 383,902 + DDA3937_RS01730 0.55 -1.3 383,903 - DDA3937_RS01730 0.55 -1.1 383,903 - DDA3937_RS01730 0.55 -0.5 383,970 + DDA3937_RS01730 0.61 -0.4 384,049 - DDA3937_RS01730 0.68 -0.8 384,064 + DDA3937_RS01730 0.69 -1.0 384,109 - DDA3937_RS01730 0.73 +0.3 384,129 + DDA3937_RS01730 0.75 -1.0 384,130 - +1.3 384,301 + DDA3937_RS01730 0.90 -0.4 384,301 + DDA3937_RS01730 0.90 +0.3 384,302 - DDA3937_RS01730 0.90 -0.3 384,309 + -0.3 384,310 - -0.5 384,310 - -1.3 384,310 - +0.1 384,310 - -0.9 384,312 + +0.3 384,312 + -2.3 384,312 + -1.3 384,313 - +0.1 384,313 - -1.7 384,342 + +0.7 384,342 + -0.0 384,342 + +1.3 384,342 + +0.1 384,342 + -1.1 384,342 + -0.8 384,342 + +0.4 384,342 + -0.3 384,343 - -0.2 384,343 - +0.5 384,343 - -2.1 384,367 - -0.7 384,367 - -1.3 384,367 - +0.0 384,435 - +2.3 384,507 + -0.9 384,507 + -1.1 384,507 + -0.7 384,508 - -0.7 384,508 - -1.3 384,508 - +0.6 384,731 + DDA3937_RS01735 0.39 -0.6 384,731 + DDA3937_RS01735 0.39 +0.7 384,731 + DDA3937_RS01735 0.39 -0.2 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 -0.1 384,731 + DDA3937_RS01735 0.39 -0.9 384,731 + DDA3937_RS01735 0.39 -1.7 384,731 + DDA3937_RS01735 0.39 -0.1 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 -0.0 384,731 + DDA3937_RS01735 0.39 +0.8 384,731 + DDA3937_RS01735 0.39 +0.3 384,731 + DDA3937_RS01735 0.39 +0.5 384,732 - DDA3937_RS01735 0.39 -0.1 384,732 - DDA3937_RS01735 0.39 +0.0 384,732 - DDA3937_RS01735 0.39 -2.1 384,732 - DDA3937_RS01735 0.39 -0.1 384,732 - DDA3937_RS01735 0.39 +1.3 384,732 - DDA3937_RS01735 0.39 +0.0 384,732 - DDA3937_RS01735 0.39 +0.4 384,732 - DDA3937_RS01735 0.39 +0.1 384,732 - DDA3937_RS01735 0.39 +1.5 384,906 + DDA3937_RS01735 0.62 +0.3 384,906 + DDA3937_RS01735 0.62 -0.3 384,907 - DDA3937_RS01735 0.62 -0.1 384,953 + DDA3937_RS01735 0.68 +0.2 384,994 - DDA3937_RS01735 0.74 +0.3 384,994 - DDA3937_RS01735 0.74 +1.3 384,995 + DDA3937_RS01735 0.74 -0.3 384,995 + DDA3937_RS01735 0.74 -0.1 384,995 + DDA3937_RS01735 0.74 -0.4 384,996 - DDA3937_RS01735 0.74 -0.3 384,996 - DDA3937_RS01735 0.74 -0.6 384,996 - DDA3937_RS01735 0.74 -1.9 384,996 - DDA3937_RS01735 0.74 -0.6 384,996 - DDA3937_RS01735 0.74 +1.8 384,996 - DDA3937_RS01735 0.74 -1.7 385,058 + DDA3937_RS01735 0.82 +0.6 385,101 + DDA3937_RS01735 0.88 +0.2 385,101 + DDA3937_RS01735 0.88 -1.0 385,138 - +1.3 385,254 - -0.2 385,259 + -1.4 385,260 - -0.4 385,262 + +0.3 385,262 + +0.6 385,263 - -0.5 385,263 - +0.4 385,263 - +0.4 385,279 + -0.3 385,301 + -0.3 385,302 - -0.7 385,302 - +0.4 385,302 - -1.0 385,323 + -1.6 385,324 - -0.4 385,324 - +0.6 385,324 - +0.2 385,395 + -1.0
Or see this region's nucleotide sequence