Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01460

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01455 and DDA3937_RS01460 are separated by 46 nucleotidesDDA3937_RS01460 and DDA3937_RS01465 are separated by 88 nucleotides DDA3937_RS01455: DDA3937_RS01455 - AsmA2 domain-containing protein YhdP, at 324,563 to 328,399 _RS01455 DDA3937_RS01460: DDA3937_RS01460 - metalloprotease TldD, at 328,446 to 329,891 _RS01460 DDA3937_RS01465: DDA3937_RS01465 - HTH-type transcriptional activator AaeR, at 329,980 to 330,924 _RS01465 Position (kb) 328 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 327.452 kb on + strandat 327.453 kb on - strand, within DDA3937_RS01455at 327.458 kb on + strand, within DDA3937_RS01455at 327.459 kb on - strandat 327.461 kb on + strand, within DDA3937_RS01455at 327.462 kb on - strand, within DDA3937_RS01455at 327.594 kb on + strand, within DDA3937_RS01455at 327.682 kb on + strand, within DDA3937_RS01455at 327.836 kb on + strand, within DDA3937_RS01455at 327.874 kb on + strand, within DDA3937_RS01455at 327.957 kb on + strandat 327.958 kb on - strandat 327.958 kb on - strand, within DDA3937_RS01455at 327.991 kb on + strand, within DDA3937_RS01455at 327.992 kb on - strand, within DDA3937_RS01455at 327.992 kb on - strand, within DDA3937_RS01455at 328.034 kb on + strandat 328.034 kb on + strandat 328.034 kb on + strandat 328.035 kb on - strandat 328.035 kb on - strandat 328.035 kb on - strandat 328.035 kb on - strandat 328.035 kb on - strandat 328.065 kb on + strandat 328.350 kb on + strandat 328.350 kb on + strandat 328.351 kb on - strandat 328.351 kb on - strandat 328.351 kb on - strandat 328.351 kb on - strandat 328.351 kb on - strandat 328.398 kb on - strandat 328.432 kb on - strandat 328.432 kb on - strandat 328.445 kb on + strandat 328.445 kb on + strandat 328.488 kb on - strandat 328.488 kb on - strandat 328.508 kb on - strandat 328.542 kb on - strandat 328.549 kb on - strandat 328.561 kb on - strandat 328.575 kb on + strandat 328.575 kb on + strandat 328.623 kb on + strand, within DDA3937_RS01460at 328.623 kb on + strand, within DDA3937_RS01460at 328.623 kb on + strand, within DDA3937_RS01460at 328.623 kb on + strand, within DDA3937_RS01460at 328.628 kb on + strand, within DDA3937_RS01460at 328.629 kb on - strand, within DDA3937_RS01460at 328.629 kb on - strand, within DDA3937_RS01460at 328.631 kb on - strand, within DDA3937_RS01460at 328.697 kb on + strand, within DDA3937_RS01460at 328.826 kb on + strand, within DDA3937_RS01460at 328.932 kb on + strand, within DDA3937_RS01460at 328.932 kb on + strand, within DDA3937_RS01460at 328.932 kb on + strand, within DDA3937_RS01460at 328.932 kb on + strand, within DDA3937_RS01460at 328.932 kb on + strand, within DDA3937_RS01460at 328.933 kb on - strand, within DDA3937_RS01460at 328.933 kb on - strand, within DDA3937_RS01460at 328.933 kb on - strand, within DDA3937_RS01460at 328.965 kb on - strand, within DDA3937_RS01460at 329.426 kb on + strand, within DDA3937_RS01460at 329.508 kb on + strand, within DDA3937_RS01460at 329.508 kb on + strand, within DDA3937_RS01460at 329.531 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strandat 329.544 kb on + strand, within DDA3937_RS01460at 329.544 kb on + strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.545 kb on - strand, within DDA3937_RS01460at 329.595 kb on + strand, within DDA3937_RS01460at 329.663 kb on + strand, within DDA3937_RS01460at 329.676 kb on + strand, within DDA3937_RS01460at 329.676 kb on + strand, within DDA3937_RS01460at 329.677 kb on - strand, within DDA3937_RS01460at 329.870 kb on + strandat 329.871 kb on - strandat 329.889 kb on + strandat 329.889 kb on + strandat 329.904 kb on + strandat 329.905 kb on - strandat 329.919 kb on + strandat 329.919 kb on + strandat 329.920 kb on - strandat 329.946 kb on + strandat 329.982 kb on - strandat 330.029 kb on + strandat 330.029 kb on + strandat 330.065 kb on + strandat 330.065 kb on + strandat 330.065 kb on + strandat 330.065 kb on + strandat 330.066 kb on - strandat 330.082 kb on + strand, within DDA3937_RS01465at 330.083 kb on - strand, within DDA3937_RS01465at 330.083 kb on - strand, within DDA3937_RS01465at 330.113 kb on + strand, within DDA3937_RS01465at 330.114 kb on - strand, within DDA3937_RS01465at 330.114 kb on - strand, within DDA3937_RS01465at 330.122 kb on + strand, within DDA3937_RS01465at 330.122 kb on + strand, within DDA3937_RS01465at 330.122 kb on + strand, within DDA3937_RS01465at 330.166 kb on + strand, within DDA3937_RS01465at 330.166 kb on + strand, within DDA3937_RS01465at 330.167 kb on - strand, within DDA3937_RS01465at 330.167 kb on - strand, within DDA3937_RS01465at 330.193 kb on + strand, within DDA3937_RS01465at 330.194 kb on - strand, within DDA3937_RS01465at 330.194 kb on - strand, within DDA3937_RS01465at 330.208 kb on + strand, within DDA3937_RS01465at 330.212 kb on + strand, within DDA3937_RS01465at 330.212 kb on + strand, within DDA3937_RS01465at 330.212 kb on + strand, within DDA3937_RS01465at 330.212 kb on + strand, within DDA3937_RS01465at 330.212 kb on + strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.213 kb on - strand, within DDA3937_RS01465at 330.317 kb on - strand, within DDA3937_RS01465at 330.350 kb on + strand, within DDA3937_RS01465at 330.350 kb on + strand, within DDA3937_RS01465at 330.413 kb on + strand, within DDA3937_RS01465at 330.414 kb on - strand, within DDA3937_RS01465at 330.414 kb on - strand, within DDA3937_RS01465at 330.414 kb on - strand, within DDA3937_RS01465at 330.414 kb on - strand, within DDA3937_RS01465at 330.444 kb on + strand, within DDA3937_RS01465at 330.445 kb on - strand, within DDA3937_RS01465at 330.598 kb on - strand, within DDA3937_RS01465at 330.625 kb on - strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.675 kb on - strand, within DDA3937_RS01465at 330.675 kb on - strand, within DDA3937_RS01465at 330.675 kb on - strand, within DDA3937_RS01465at 330.676 kb on + strand, within DDA3937_RS01465at 330.676 kb on + strandat 330.676 kb on + strand, within DDA3937_RS01465at 330.676 kb on + strandat 330.676 kb on + strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.728 kb on + strand, within DDA3937_RS01465at 330.731 kb on + strand, within DDA3937_RS01465at 330.732 kb on - strand, within DDA3937_RS01465at 330.762 kb on + strand, within DDA3937_RS01465at 330.763 kb on - strand, within DDA3937_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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327,452 + +0.3
327,453 - DDA3937_RS01455 0.75 +0.7
327,458 + DDA3937_RS01455 0.75 +0.2
327,459 - +1.3
327,461 + DDA3937_RS01455 0.76 +1.3
327,462 - DDA3937_RS01455 0.76 -0.7
327,594 + DDA3937_RS01455 0.79 -0.7
327,682 + DDA3937_RS01455 0.81 -0.5
327,836 + DDA3937_RS01455 0.85 -0.2
327,874 + DDA3937_RS01455 0.86 -0.7
327,957 + +1.3
327,958 - +0.7
327,958 - DDA3937_RS01455 0.88 -0.2
327,991 + DDA3937_RS01455 0.89 -0.7
327,992 - DDA3937_RS01455 0.89 -0.7
327,992 - DDA3937_RS01455 0.89 -2.2
328,034 + -1.9
328,034 + -2.9
328,034 + -1.5
328,035 - -0.7
328,035 - -1.1
328,035 - +0.4
328,035 - +0.3
328,035 - -0.5
328,065 + -1.4
328,350 + +0.4
328,350 + +0.9
328,351 - +0.2
328,351 - -0.1
328,351 - +0.3
328,351 - -1.4
328,351 - +0.6
328,398 - +0.9
328,432 - +0.5
328,432 - -0.3
328,445 + -0.1
328,445 + -0.7
328,488 - -1.9
328,488 - +1.0
328,508 - -0.1
328,542 - -0.8
328,549 - +0.1
328,561 - -1.5
328,575 + -2.1
328,575 + -0.3
328,623 + DDA3937_RS01460 0.12 -0.7
328,623 + DDA3937_RS01460 0.12 -1.2
328,623 + DDA3937_RS01460 0.12 -1.3
328,623 + DDA3937_RS01460 0.12 -0.7
328,628 + DDA3937_RS01460 0.13 -2.3
328,629 - DDA3937_RS01460 0.13 +0.9
328,629 - DDA3937_RS01460 0.13 -0.9
328,631 - DDA3937_RS01460 0.13 -1.2
328,697 + DDA3937_RS01460 0.17 -0.4
328,826 + DDA3937_RS01460 0.26 -1.5
328,932 + DDA3937_RS01460 0.34 -0.9
328,932 + DDA3937_RS01460 0.34 -0.5
328,932 + DDA3937_RS01460 0.34 +0.3
328,932 + DDA3937_RS01460 0.34 -1.0
328,932 + DDA3937_RS01460 0.34 -0.6
328,933 - DDA3937_RS01460 0.34 -0.1
328,933 - DDA3937_RS01460 0.34 -0.1
328,933 - DDA3937_RS01460 0.34 -0.7
328,965 - DDA3937_RS01460 0.36 +1.7
329,426 + DDA3937_RS01460 0.68 -1.5
329,508 + DDA3937_RS01460 0.73 +0.9
329,508 + DDA3937_RS01460 0.73 +0.9
329,531 + DDA3937_RS01460 0.75 -0.7
329,544 + DDA3937_RS01460 0.76 -1.3
329,544 + DDA3937_RS01460 0.76 -0.9
329,544 + DDA3937_RS01460 0.76 -0.3
329,544 + DDA3937_RS01460 0.76 -1.0
329,544 + DDA3937_RS01460 0.76 -0.4
329,544 + +1.3
329,544 + DDA3937_RS01460 0.76 +1.0
329,544 + DDA3937_RS01460 0.76 -0.5
329,545 - DDA3937_RS01460 0.76 -0.6
329,545 - DDA3937_RS01460 0.76 +0.3
329,545 - DDA3937_RS01460 0.76 +1.6
329,545 - DDA3937_RS01460 0.76 -0.7
329,545 - DDA3937_RS01460 0.76 -0.7
329,545 - DDA3937_RS01460 0.76 +2.3
329,545 - DDA3937_RS01460 0.76 +0.8
329,545 - DDA3937_RS01460 0.76 -2.3
329,595 + DDA3937_RS01460 0.79 +1.0
329,663 + DDA3937_RS01460 0.84 -1.6
329,676 + DDA3937_RS01460 0.85 -0.2
329,676 + DDA3937_RS01460 0.85 -0.9
329,677 - DDA3937_RS01460 0.85 -2.4
329,870 + -1.2
329,871 - +0.3
329,889 + +0.3
329,889 + -0.4
329,904 + -0.1
329,905 - +0.9
329,919 + +0.4
329,919 + -0.8
329,920 - -1.0
329,946 + -1.1
329,982 - -0.3
330,029 + -0.4
330,029 + -0.3
330,065 + -0.1
330,065 + +0.7
330,065 + -2.3
330,065 + -0.5
330,066 - -0.1
330,082 + DDA3937_RS01465 0.11 -0.8
330,083 - DDA3937_RS01465 0.11 -0.9
330,083 - DDA3937_RS01465 0.11 +0.1
330,113 + DDA3937_RS01465 0.14 +0.2
330,114 - DDA3937_RS01465 0.14 -1.4
330,114 - DDA3937_RS01465 0.14 -0.5
330,122 + DDA3937_RS01465 0.15 -0.4
330,122 + DDA3937_RS01465 0.15 +0.2
330,122 + DDA3937_RS01465 0.15 -0.2
330,166 + DDA3937_RS01465 0.20 -0.9
330,166 + DDA3937_RS01465 0.20 +0.2
330,167 - DDA3937_RS01465 0.20 -1.1
330,167 - DDA3937_RS01465 0.20 -0.2
330,193 + DDA3937_RS01465 0.23 -0.2
330,194 - DDA3937_RS01465 0.23 +0.1
330,194 - DDA3937_RS01465 0.23 -0.4
330,208 + DDA3937_RS01465 0.24 +0.5
330,212 + DDA3937_RS01465 0.25 -0.5
330,212 + DDA3937_RS01465 0.25 -1.5
330,212 + DDA3937_RS01465 0.25 +2.2
330,212 + DDA3937_RS01465 0.25 +0.1
330,212 + DDA3937_RS01465 0.25 -0.5
330,213 - DDA3937_RS01465 0.25 -0.6
330,213 - DDA3937_RS01465 0.25 -0.3
330,213 - DDA3937_RS01465 0.25 -0.2
330,213 - DDA3937_RS01465 0.25 -1.4
330,213 - DDA3937_RS01465 0.25 +0.2
330,213 - DDA3937_RS01465 0.25 +1.3
330,213 - DDA3937_RS01465 0.25 -0.5
330,213 - DDA3937_RS01465 0.25 -2.4
330,317 - DDA3937_RS01465 0.36 +0.1
330,350 + DDA3937_RS01465 0.39 +1.0
330,350 + DDA3937_RS01465 0.39 -1.1
330,413 + DDA3937_RS01465 0.46 -0.8
330,414 - DDA3937_RS01465 0.46 -0.6
330,414 - DDA3937_RS01465 0.46 -1.2
330,414 - DDA3937_RS01465 0.46 -2.1
330,414 - DDA3937_RS01465 0.46 -1.3
330,444 + DDA3937_RS01465 0.49 -0.1
330,445 - DDA3937_RS01465 0.49 -1.8
330,598 - DDA3937_RS01465 0.65 -0.1
330,625 - DDA3937_RS01465 0.68 +0.2
330,674 + DDA3937_RS01465 0.73 +0.7
330,674 + DDA3937_RS01465 0.73 +0.1
330,674 + DDA3937_RS01465 0.73 -0.6
330,674 + DDA3937_RS01465 0.73 -0.4
330,674 + DDA3937_RS01465 0.73 -2.3
330,674 + DDA3937_RS01465 0.73 -0.1
330,674 + DDA3937_RS01465 0.73 -1.1
330,674 + DDA3937_RS01465 0.73 +1.3
330,674 + DDA3937_RS01465 0.73 -0.3
330,675 - DDA3937_RS01465 0.74 +0.8
330,675 - DDA3937_RS01465 0.74 -1.0
330,675 - DDA3937_RS01465 0.74 -0.6
330,676 + DDA3937_RS01465 0.74 +0.6
330,676 + +0.3
330,676 + DDA3937_RS01465 0.74 -0.7
330,676 + +0.9
330,676 + DDA3937_RS01465 0.74 +0.2
330,677 - DDA3937_RS01465 0.74 -0.4
330,677 - DDA3937_RS01465 0.74 +0.1
330,677 - DDA3937_RS01465 0.74 -0.6
330,677 - DDA3937_RS01465 0.74 +1.8
330,677 - DDA3937_RS01465 0.74 -0.1
330,677 - DDA3937_RS01465 0.74 -0.9
330,677 - DDA3937_RS01465 0.74 -0.9
330,677 - DDA3937_RS01465 0.74 -0.1
330,677 - DDA3937_RS01465 0.74 -1.8
330,677 - DDA3937_RS01465 0.74 -0.8
330,728 + DDA3937_RS01465 0.79 -0.1
330,731 + DDA3937_RS01465 0.79 +0.7
330,732 - DDA3937_RS01465 0.80 -1.1
330,762 + DDA3937_RS01465 0.83 +0.7
330,763 - DDA3937_RS01465 0.83 -0.6

Or see this region's nucleotide sequence