Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01150

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01145 and DDA3937_RS01150 are separated by 13 nucleotidesDDA3937_RS01150 and DDA3937_RS01155 are separated by 89 nucleotidesDDA3937_RS01155 and DDA3937_RS01160 are separated by 1 nucleotides DDA3937_RS01145: DDA3937_RS01145 - heavy metal sensor histidine kinase, at 262,543 to 264,006 _RS01145 DDA3937_RS01150: DDA3937_RS01150 - 2-iminoacetate synthase ThiH, at 264,020 to 265,183 _RS01150 DDA3937_RS01155: DDA3937_RS01155 - thiazole synthase, at 265,273 to 266,052 _RS01155 DDA3937_RS01160: DDA3937_RS01160 - sulfur carrier protein ThiS, at 266,054 to 266,254 _RS01160 Position (kb) 264 265 266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 263.053 kb on + strand, within DDA3937_RS01145at 263.054 kb on - strand, within DDA3937_RS01145at 263.054 kb on - strand, within DDA3937_RS01145at 263.113 kb on + strand, within DDA3937_RS01145at 263.136 kb on - strand, within DDA3937_RS01145at 263.185 kb on - strand, within DDA3937_RS01145at 263.371 kb on + strand, within DDA3937_RS01145at 263.371 kb on + strand, within DDA3937_RS01145at 263.395 kb on + strandat 263.548 kb on + strand, within DDA3937_RS01145at 263.671 kb on + strand, within DDA3937_RS01145at 263.996 kb on + strandat 264.045 kb on + strandat 264.402 kb on + strand, within DDA3937_RS01150at 264.403 kb on - strand, within DDA3937_RS01150at 264.417 kb on + strand, within DDA3937_RS01150at 264.418 kb on - strand, within DDA3937_RS01150at 264.418 kb on - strand, within DDA3937_RS01150at 264.418 kb on - strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.582 kb on + strand, within DDA3937_RS01150at 264.582 kb on + strandat 264.582 kb on + strand, within DDA3937_RS01150at 264.597 kb on + strand, within DDA3937_RS01150at 264.597 kb on + strand, within DDA3937_RS01150at 264.597 kb on + strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.609 kb on + strand, within DDA3937_RS01150at 264.609 kb on + strand, within DDA3937_RS01150at 264.610 kb on - strand, within DDA3937_RS01150at 264.732 kb on + strand, within DDA3937_RS01150at 264.733 kb on - strand, within DDA3937_RS01150at 264.733 kb on - strand, within DDA3937_RS01150at 264.748 kb on + strand, within DDA3937_RS01150at 264.749 kb on - strand, within DDA3937_RS01150at 264.880 kb on - strand, within DDA3937_RS01150at 264.880 kb on - strand, within DDA3937_RS01150at 264.880 kb on - strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.924 kb on + strand, within DDA3937_RS01150at 264.924 kb on + strand, within DDA3937_RS01150at 264.924 kb on + strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 265.039 kb on + strand, within DDA3937_RS01150at 265.097 kb on + strandat 265.098 kb on - strandat 265.192 kb on + strandat 265.258 kb on + strandat 265.274 kb on + strandat 265.274 kb on + strandat 265.274 kb on + strandat 265.513 kb on + strand, within DDA3937_RS01155at 265.513 kb on + strand, within DDA3937_RS01155at 265.514 kb on - strand, within DDA3937_RS01155at 265.514 kb on - strand, within DDA3937_RS01155at 265.514 kb on - strand, within DDA3937_RS01155at 265.514 kb on - strand, within DDA3937_RS01155at 265.514 kb on - strand, within DDA3937_RS01155at 265.742 kb on + strand, within DDA3937_RS01155at 265.742 kb on + strand, within DDA3937_RS01155at 265.742 kb on + strand, within DDA3937_RS01155at 265.742 kb on + strand, within DDA3937_RS01155at 265.743 kb on - strand, within DDA3937_RS01155at 265.743 kb on - strand, within DDA3937_RS01155at 265.743 kb on - strand, within DDA3937_RS01155at 265.743 kb on - strand, within DDA3937_RS01155at 265.743 kb on - strand, within DDA3937_RS01155at 265.864 kb on + strand, within DDA3937_RS01155at 265.865 kb on - strand, within DDA3937_RS01155at 266.014 kb on + strandat 266.025 kb on + strandat 266.026 kb on - strandat 266.026 kb on - strandat 266.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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263,053 + DDA3937_RS01145 0.35 -1.2
263,054 - DDA3937_RS01145 0.35 +0.8
263,054 - DDA3937_RS01145 0.35 +0.7
263,113 + DDA3937_RS01145 0.39 +0.2
263,136 - DDA3937_RS01145 0.41 +0.4
263,185 - DDA3937_RS01145 0.44 +0.3
263,371 + DDA3937_RS01145 0.57 +0.2
263,371 + DDA3937_RS01145 0.57 -2.7
263,395 + -0.3
263,548 + DDA3937_RS01145 0.69 -0.4
263,671 + DDA3937_RS01145 0.77 -0.2
263,996 + -0.4
264,045 + -0.7
264,402 + DDA3937_RS01150 0.33 +0.5
264,403 - DDA3937_RS01150 0.33 +1.1
264,417 + DDA3937_RS01150 0.34 +0.1
264,418 - DDA3937_RS01150 0.34 -0.3
264,418 - DDA3937_RS01150 0.34 +0.5
264,418 - DDA3937_RS01150 0.34 +0.2
264,439 + DDA3937_RS01150 0.36 +0.7
264,439 + DDA3937_RS01150 0.36 +0.1
264,439 + DDA3937_RS01150 0.36 -0.8
264,439 + DDA3937_RS01150 0.36 +0.7
264,439 + DDA3937_RS01150 0.36 -0.1
264,439 + DDA3937_RS01150 0.36 -1.6
264,440 - DDA3937_RS01150 0.36 +1.3
264,440 - DDA3937_RS01150 0.36 +1.3
264,440 - DDA3937_RS01150 0.36 -0.2
264,440 - DDA3937_RS01150 0.36 -0.6
264,440 - DDA3937_RS01150 0.36 +0.4
264,440 - DDA3937_RS01150 0.36 +2.9
264,440 - DDA3937_RS01150 0.36 -0.3
264,440 - DDA3937_RS01150 0.36 -1.5
264,440 - DDA3937_RS01150 0.36 +2.9
264,440 - DDA3937_RS01150 0.36 +0.2
264,440 - DDA3937_RS01150 0.36 -0.3
264,440 - DDA3937_RS01150 0.36 +1.5
264,440 - DDA3937_RS01150 0.36 +0.4
264,440 - DDA3937_RS01150 0.36 -0.3
264,441 + DDA3937_RS01150 0.36 +0.3
264,441 + DDA3937_RS01150 0.36 +0.0
264,441 + DDA3937_RS01150 0.36 +0.3
264,441 + DDA3937_RS01150 0.36 +1.6
264,441 + DDA3937_RS01150 0.36 -0.0
264,441 + DDA3937_RS01150 0.36 +0.0
264,441 + DDA3937_RS01150 0.36 -0.6
264,441 + DDA3937_RS01150 0.36 -0.3
264,441 + DDA3937_RS01150 0.36 -0.2
264,441 + DDA3937_RS01150 0.36 +3.3
264,441 + DDA3937_RS01150 0.36 +0.3
264,441 + DDA3937_RS01150 0.36 -0.4
264,441 + DDA3937_RS01150 0.36 -0.0
264,442 - DDA3937_RS01150 0.36 +1.3
264,442 - DDA3937_RS01150 0.36 -1.7
264,442 - DDA3937_RS01150 0.36 -0.2
264,442 - DDA3937_RS01150 0.36 -0.1
264,442 - DDA3937_RS01150 0.36 +0.5
264,442 - DDA3937_RS01150 0.36 +0.0
264,442 - DDA3937_RS01150 0.36 -0.5
264,442 - DDA3937_RS01150 0.36 +0.5
264,442 - DDA3937_RS01150 0.36 -0.0
264,442 - DDA3937_RS01150 0.36 -0.8
264,442 - DDA3937_RS01150 0.36 -0.3
264,442 - DDA3937_RS01150 0.36 +0.7
264,442 - DDA3937_RS01150 0.36 -1.6
264,442 - DDA3937_RS01150 0.36 +1.5
264,442 - DDA3937_RS01150 0.36 +0.2
264,442 - DDA3937_RS01150 0.36 -0.8
264,582 + DDA3937_RS01150 0.48 +0.3
264,582 + -0.3
264,582 + DDA3937_RS01150 0.48 +0.6
264,597 + DDA3937_RS01150 0.50 +0.7
264,597 + DDA3937_RS01150 0.50 +1.6
264,597 + DDA3937_RS01150 0.50 +1.0
264,598 - DDA3937_RS01150 0.50 -0.8
264,598 - DDA3937_RS01150 0.50 +0.3
264,598 - DDA3937_RS01150 0.50 +0.4
264,598 - DDA3937_RS01150 0.50 -0.1
264,609 + DDA3937_RS01150 0.51 +0.6
264,609 + DDA3937_RS01150 0.51 +0.3
264,610 - DDA3937_RS01150 0.51 -0.3
264,732 + DDA3937_RS01150 0.61 +1.5
264,733 - DDA3937_RS01150 0.61 +0.4
264,733 - DDA3937_RS01150 0.61 +1.3
264,748 + DDA3937_RS01150 0.63 -0.4
264,749 - DDA3937_RS01150 0.63 -0.5
264,880 - DDA3937_RS01150 0.74 +0.5
264,880 - DDA3937_RS01150 0.74 -0.4
264,880 - DDA3937_RS01150 0.74 +2.2
264,912 + DDA3937_RS01150 0.77 -1.1
264,912 + DDA3937_RS01150 0.77 +1.4
264,912 + DDA3937_RS01150 0.77 +0.7
264,912 + DDA3937_RS01150 0.77 +1.0
264,912 + DDA3937_RS01150 0.77 +0.1
264,912 + DDA3937_RS01150 0.77 -0.2
264,912 + DDA3937_RS01150 0.77 -0.1
264,913 - DDA3937_RS01150 0.77 -0.1
264,913 - DDA3937_RS01150 0.77 +0.5
264,913 - DDA3937_RS01150 0.77 +0.0
264,913 - DDA3937_RS01150 0.77 -1.4
264,913 - DDA3937_RS01150 0.77 -1.3
264,924 + DDA3937_RS01150 0.78 +1.7
264,924 + DDA3937_RS01150 0.78 -1.9
264,924 + DDA3937_RS01150 0.78 -1.3
264,925 - DDA3937_RS01150 0.78 -0.1
264,925 - DDA3937_RS01150 0.78 +1.5
264,925 - DDA3937_RS01150 0.78 -0.4
264,925 - DDA3937_RS01150 0.78 +0.5
264,925 - DDA3937_RS01150 0.78 +1.0
265,039 + DDA3937_RS01150 0.88 -0.0
265,097 + -0.5
265,098 - +0.3
265,192 + -0.7
265,258 + +0.1
265,274 + +0.7
265,274 + -0.9
265,274 + +0.3
265,513 + DDA3937_RS01155 0.31 -0.7
265,513 + DDA3937_RS01155 0.31 -0.4
265,514 - DDA3937_RS01155 0.31 -0.9
265,514 - DDA3937_RS01155 0.31 -1.2
265,514 - DDA3937_RS01155 0.31 +0.2
265,514 - DDA3937_RS01155 0.31 -0.0
265,514 - DDA3937_RS01155 0.31 +0.3
265,742 + DDA3937_RS01155 0.60 -0.3
265,742 + DDA3937_RS01155 0.60 -0.5
265,742 + DDA3937_RS01155 0.60 -1.5
265,742 + DDA3937_RS01155 0.60 -1.5
265,743 - DDA3937_RS01155 0.60 +0.6
265,743 - DDA3937_RS01155 0.60 -0.2
265,743 - DDA3937_RS01155 0.60 -0.2
265,743 - DDA3937_RS01155 0.60 +0.7
265,743 - DDA3937_RS01155 0.60 +0.3
265,864 + DDA3937_RS01155 0.76 -0.2
265,865 - DDA3937_RS01155 0.76 -0.5
266,014 + +0.3
266,025 + -1.5
266,026 - +0.6
266,026 - +0.4
266,026 - +0.1

Or see this region's nucleotide sequence