Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00825 and DDA3937_RS00830 overlap by 4 nucleotides DDA3937_RS00830 and DDA3937_RS00835 are separated by 202 nucleotides DDA3937_RS00835 and DDA3937_RS00840 are separated by 129 nucleotides
DDA3937_RS00825: DDA3937_RS00825 - tail fiber assembly protein, at 193,070 to 193,465
_RS00825
DDA3937_RS00830: DDA3937_RS00830 - NUDIX domain-containing protein, at 193,462 to 193,926
_RS00830
DDA3937_RS00835: DDA3937_RS00835 - 2TM domain-containing protein, at 194,129 to 194,599
_RS00835
DDA3937_RS00840: DDA3937_RS00840 - CDF family cation-efflux transporter FieF, at 194,729 to 195,631
_RS00840
Position (kb) 194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.205 kb on + strand, within DDA3937_RS00825 at 193.211 kb on + strand, within DDA3937_RS00825 at 193.212 kb on - strand, within DDA3937_RS00825 at 193.212 kb on - strand, within DDA3937_RS00825 at 193.229 kb on - strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.336 kb on - strand, within DDA3937_RS00825 at 193.336 kb on - strand, within DDA3937_RS00825 at 193.348 kb on + strand, within DDA3937_RS00825 at 193.363 kb on + strand, within DDA3937_RS00825 at 193.391 kb on + strand, within DDA3937_RS00825 at 193.391 kb on + strand, within DDA3937_RS00825 at 193.392 kb on - strand, within DDA3937_RS00825 at 193.411 kb on + strand, within DDA3937_RS00825 at 193.473 kb on + strand at 193.473 kb on + strand at 193.473 kb on + strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.523 kb on + strand, within DDA3937_RS00830 at 193.823 kb on + strand, within DDA3937_RS00830 at 193.823 kb on + strand, within DDA3937_RS00830 at 193.867 kb on + strand, within DDA3937_RS00830 at 193.868 kb on - strand, within DDA3937_RS00830 at 193.868 kb on - strand, within DDA3937_RS00830 at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.943 kb on + strand at 193.943 kb on + strand at 193.943 kb on + strand at 193.944 kb on - strand at 193.950 kb on + strand at 193.950 kb on + strand at 193.958 kb on - strand at 194.073 kb on + strand at 194.073 kb on + strand at 194.073 kb on + strand at 194.074 kb on - strand at 194.074 kb on - strand at 194.074 kb on - strand at 194.115 kb on - strand at 194.115 kb on - strand at 194.478 kb on + strand, within DDA3937_RS00835 at 194.479 kb on - strand at 194.479 kb on - strand, within DDA3937_RS00835 at 194.479 kb on - strand, within DDA3937_RS00835 at 194.586 kb on + strand at 194.598 kb on - strand at 194.625 kb on + strand at 194.626 kb on - strand at 194.626 kb on - strand at 194.626 kb on - strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.663 kb on - strand at 194.697 kb on - strand at 194.698 kb on + strand at 194.698 kb on + strand at 194.698 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.724 kb on - strand at 194.728 kb on + strand at 194.729 kb on - strand at 194.729 kb on - strand at 194.729 kb on - strand at 194.742 kb on - strand at 194.796 kb on + strand at 194.797 kb on - strand at 194.803 kb on + strand at 194.804 kb on - strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.826 kb on - strand, within DDA3937_RS00840 at 194.912 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.941 kb on + strand, within DDA3937_RS00840 at 194.942 kb on - strand, within DDA3937_RS00840 at 194.942 kb on - strand at 194.942 kb on - strand, within DDA3937_RS00840 at 194.942 kb on - strand, within DDA3937_RS00840 at 194.942 kb on - strand, within DDA3937_RS00840 at 195.088 kb on + strand, within DDA3937_RS00840 at 195.088 kb on + strand, within DDA3937_RS00840 at 195.148 kb on + strand, within DDA3937_RS00840 at 195.157 kb on + strand, within DDA3937_RS00840 at 195.157 kb on + strand, within DDA3937_RS00840 at 195.158 kb on - strand, within DDA3937_RS00840 at 195.158 kb on - strand, within DDA3937_RS00840 at 195.189 kb on - strand, within DDA3937_RS00840 at 195.253 kb on + strand, within DDA3937_RS00840 at 195.253 kb on + strand, within DDA3937_RS00840 at 195.253 kb on + strand, within DDA3937_RS00840 at 195.254 kb on - strand, within DDA3937_RS00840 at 195.254 kb on - strand, within DDA3937_RS00840 at 195.295 kb on + strand, within DDA3937_RS00840 at 195.295 kb on + strand, within DDA3937_RS00840 at 195.296 kb on - strand, within DDA3937_RS00840 at 195.300 kb on + strand, within DDA3937_RS00840 at 195.300 kb on + strand, within DDA3937_RS00840 at 195.324 kb on - strand, within DDA3937_RS00840 at 195.324 kb on - strand, within DDA3937_RS00840 at 195.388 kb on + strand, within DDA3937_RS00840 at 195.388 kb on + strand, within DDA3937_RS00840 at 195.389 kb on - strand at 195.411 kb on + strand at 195.411 kb on + strand, within DDA3937_RS00840 at 195.569 kb on - strand at 195.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 193,205 + DDA3937_RS00825 0.34 -1.6 193,211 + DDA3937_RS00825 0.36 +0.1 193,212 - DDA3937_RS00825 0.36 -0.0 193,212 - DDA3937_RS00825 0.36 +0.4 193,229 - DDA3937_RS00825 0.40 -0.1 193,256 + DDA3937_RS00825 0.47 -1.5 193,256 + DDA3937_RS00825 0.47 +0.3 193,256 + DDA3937_RS00825 0.47 -1.5 193,256 + DDA3937_RS00825 0.47 +0.7 193,257 - DDA3937_RS00825 0.47 -0.0 193,257 - DDA3937_RS00825 0.47 -0.3 193,257 - DDA3937_RS00825 0.47 -0.4 193,258 + DDA3937_RS00825 0.47 +0.1 193,258 + DDA3937_RS00825 0.47 -0.7 193,258 + DDA3937_RS00825 0.47 -0.2 193,258 + DDA3937_RS00825 0.47 -1.7 193,258 + DDA3937_RS00825 0.47 -0.2 193,259 - DDA3937_RS00825 0.48 -0.0 193,259 - DDA3937_RS00825 0.48 -1.6 193,259 - DDA3937_RS00825 0.48 +0.2 193,290 + DDA3937_RS00825 0.56 -1.2 193,290 + DDA3937_RS00825 0.56 -1.4 193,290 + DDA3937_RS00825 0.56 +0.0 193,290 + DDA3937_RS00825 0.56 +0.2 193,290 + DDA3937_RS00825 0.56 -0.1 193,335 + DDA3937_RS00825 0.67 -0.2 193,335 + DDA3937_RS00825 0.67 -2.1 193,335 + DDA3937_RS00825 0.67 +1.8 193,336 - DDA3937_RS00825 0.67 -0.6 193,336 - DDA3937_RS00825 0.67 -0.2 193,348 + DDA3937_RS00825 0.70 -0.3 193,363 + DDA3937_RS00825 0.74 -0.3 193,391 + DDA3937_RS00825 0.81 +0.2 193,391 + DDA3937_RS00825 0.81 +0.4 193,392 - DDA3937_RS00825 0.81 -0.2 193,411 + DDA3937_RS00825 0.86 +0.6 193,473 + +1.3 193,473 + +0.2 193,473 + -0.5 193,474 - -0.5 193,474 - +0.5 193,474 - -0.7 193,474 - +0.3 193,474 - -0.3 193,523 + DDA3937_RS00830 0.13 -0.1 193,823 + DDA3937_RS00830 0.78 +0.8 193,823 + DDA3937_RS00830 0.78 +0.2 193,867 + DDA3937_RS00830 0.87 +1.3 193,868 - DDA3937_RS00830 0.87 -0.1 193,868 - DDA3937_RS00830 0.87 +0.5 193,941 + +0.5 193,941 + -0.1 193,941 + -1.2 193,941 + -0.2 193,941 + -0.8 193,942 - +0.3 193,942 - -0.9 193,942 - +0.0 193,942 - -0.7 193,943 + -0.3 193,943 + +0.9 193,943 + +0.8 193,944 - +0.3 193,950 + +0.8 193,950 + -0.3 193,958 - -0.2 194,073 + -0.5 194,073 + -0.1 194,073 + -0.5 194,074 - -2.1 194,074 - +0.3 194,074 - -0.3 194,115 - -1.7 194,115 - +1.9 194,478 + DDA3937_RS00835 0.74 -0.5 194,479 - -0.2 194,479 - DDA3937_RS00835 0.74 +0.6 194,479 - DDA3937_RS00835 0.74 -0.4 194,586 + +0.6 194,598 - -0.4 194,625 + -0.6 194,626 - +1.6 194,626 - -0.0 194,626 - -0.6 194,662 + -1.1 194,662 + -0.0 194,662 + +2.7 194,663 - -0.3 194,697 - -0.2 194,698 + +0.3 194,698 + +0.6 194,698 + -0.2 194,723 + -0.3 194,723 + -0.5 194,723 + +0.6 194,723 + -1.0 194,724 - -1.1 194,728 + +1.3 194,729 - -0.3 194,729 - +0.5 194,729 - -0.7 194,742 - -0.1 194,796 + -0.3 194,797 - -0.5 194,803 + -0.6 194,804 - -0.3 194,813 + -0.9 194,813 + +0.4 194,813 + -0.7 194,813 + -0.8 194,813 + -0.2 194,813 + +0.2 194,813 + -1.1 194,814 - +0.3 194,814 - -0.6 194,814 - -0.4 194,814 - +0.5 194,814 - -0.1 194,825 + DDA3937_RS00840 0.11 -0.1 194,825 + DDA3937_RS00840 0.11 +0.7 194,825 + DDA3937_RS00840 0.11 +0.0 194,825 + DDA3937_RS00840 0.11 -0.5 194,826 - DDA3937_RS00840 0.11 -0.4 194,912 + DDA3937_RS00840 0.20 -0.1 194,941 + DDA3937_RS00840 0.23 -2.6 194,941 + DDA3937_RS00840 0.23 +0.8 194,941 + DDA3937_RS00840 0.23 -0.9 194,941 + DDA3937_RS00840 0.23 -0.6 194,941 + DDA3937_RS00840 0.23 +1.0 194,941 + DDA3937_RS00840 0.23 -1.1 194,941 + DDA3937_RS00840 0.23 +1.0 194,941 + DDA3937_RS00840 0.23 -0.0 194,941 + DDA3937_RS00840 0.23 +0.1 194,942 - DDA3937_RS00840 0.24 -0.7 194,942 - -0.7 194,942 - DDA3937_RS00840 0.24 -2.4 194,942 - DDA3937_RS00840 0.24 -0.4 194,942 - DDA3937_RS00840 0.24 -0.2 195,088 + DDA3937_RS00840 0.40 +0.9 195,088 + DDA3937_RS00840 0.40 -0.8 195,148 + DDA3937_RS00840 0.46 -0.5 195,157 + DDA3937_RS00840 0.47 -0.4 195,157 + DDA3937_RS00840 0.47 +0.3 195,158 - DDA3937_RS00840 0.48 -2.6 195,158 - DDA3937_RS00840 0.48 -1.0 195,189 - DDA3937_RS00840 0.51 +0.4 195,253 + DDA3937_RS00840 0.58 -1.0 195,253 + DDA3937_RS00840 0.58 -0.7 195,253 + DDA3937_RS00840 0.58 -0.7 195,254 - DDA3937_RS00840 0.58 -0.0 195,254 - DDA3937_RS00840 0.58 +1.3 195,295 + DDA3937_RS00840 0.63 -0.7 195,295 + DDA3937_RS00840 0.63 -0.6 195,296 - DDA3937_RS00840 0.63 +0.1 195,300 + DDA3937_RS00840 0.63 -0.7 195,300 + DDA3937_RS00840 0.63 +0.1 195,324 - DDA3937_RS00840 0.66 -0.7 195,324 - DDA3937_RS00840 0.66 -0.7 195,388 + DDA3937_RS00840 0.73 -0.6 195,388 + DDA3937_RS00840 0.73 -0.8 195,389 - +0.3 195,411 + +0.6 195,411 + DDA3937_RS00840 0.76 -1.1 195,569 - -0.2 195,569 - +0.3
Or see this region's nucleotide sequence