Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00745 and DDA3937_RS00750 are separated by 73 nucleotides DDA3937_RS00750 and DDA3937_RS00755 are separated by 169 nucleotides DDA3937_RS00755 and DDA3937_RS00760 are separated by 54 nucleotides
DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296
_RS00745
DDA3937_RS00750: DDA3937_RS00750 - DUF2756 domain-containing protein, at 177,370 to 177,654
_RS00750
DDA3937_RS00755: DDA3937_RS00755 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 177,824 to 178,288
_RS00755
DDA3937_RS00760: DDA3937_RS00760 - hypothetical protein, at 178,343 to 178,933
_RS00760
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.510 kb on + strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.582 kb on + strand, within DDA3937_RS00745 at 176.798 kb on - strand, within DDA3937_RS00745 at 176.901 kb on + strand, within DDA3937_RS00745 at 176.902 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.048 kb on - strand, within DDA3937_RS00745 at 177.170 kb on + strand, within DDA3937_RS00745 at 177.292 kb on + strand at 177.293 kb on - strand at 177.295 kb on - strand at 177.295 kb on - strand at 177.300 kb on - strand at 177.340 kb on + strand at 177.340 kb on + strand at 177.367 kb on - strand at 177.374 kb on + strand at 177.443 kb on - strand at 177.484 kb on - strand, within DDA3937_RS00750 at 177.583 kb on + strand, within DDA3937_RS00750 at 177.611 kb on - strand, within DDA3937_RS00750 at 177.644 kb on - strand at 177.646 kb on + strand at 177.646 kb on + strand at 177.646 kb on + strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.691 kb on - strand at 177.691 kb on - strand at 177.783 kb on - strand at 177.783 kb on - strand at 177.788 kb on - strand at 177.788 kb on - strand at 177.789 kb on + strand at 177.790 kb on - strand at 177.820 kb on + strand at 177.820 kb on + strand at 177.832 kb on + strand at 177.842 kb on + strand at 177.843 kb on - strand at 177.843 kb on - strand at 177.874 kb on + strand, within DDA3937_RS00755 at 177.875 kb on - strand, within DDA3937_RS00755 at 177.875 kb on - strand, within DDA3937_RS00755 at 177.877 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.079 kb on + strand, within DDA3937_RS00755 at 178.094 kb on + strand, within DDA3937_RS00755 at 178.150 kb on + strand at 178.151 kb on - strand, within DDA3937_RS00755 at 178.247 kb on + strand at 178.493 kb on + strand, within DDA3937_RS00760
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 176,510 + DDA3937_RS00745 0.18 +0.5 176,511 - DDA3937_RS00745 0.18 -1.7 176,511 - DDA3937_RS00745 0.18 -0.3 176,582 + DDA3937_RS00745 0.25 +0.1 176,798 - DDA3937_RS00745 0.48 +1.4 176,901 + DDA3937_RS00745 0.59 -0.5 176,902 - DDA3937_RS00745 0.59 -0.8 177,018 - DDA3937_RS00745 0.71 -1.4 177,018 - DDA3937_RS00745 0.71 +0.4 177,048 - DDA3937_RS00745 0.74 +0.8 177,170 + DDA3937_RS00745 0.87 +0.1 177,292 + +0.1 177,293 - -0.0 177,295 - +0.9 177,295 - -0.7 177,300 - +1.4 177,340 + +0.5 177,340 + +1.8 177,367 - -0.2 177,374 + +0.3 177,443 - +0.4 177,484 - DDA3937_RS00750 0.40 -0.5 177,583 + DDA3937_RS00750 0.75 -1.5 177,611 - DDA3937_RS00750 0.85 -0.9 177,644 - +0.3 177,646 + -1.4 177,646 + +0.5 177,646 + +0.2 177,647 - +0.3 177,647 - -0.3 177,647 - -1.0 177,647 - -1.6 177,691 - -0.4 177,691 - -0.5 177,783 - +0.2 177,783 - -0.5 177,788 - +0.1 177,788 - -0.9 177,789 + -0.5 177,790 - +1.9 177,820 + -0.2 177,820 + -1.3 177,832 + -0.9 177,842 + +0.1 177,843 - -2.6 177,843 - -0.3 177,874 + DDA3937_RS00755 0.11 -0.6 177,875 - DDA3937_RS00755 0.11 -0.0 177,875 - DDA3937_RS00755 0.11 +0.3 177,877 + DDA3937_RS00755 0.11 +2.2 178,010 + DDA3937_RS00755 0.40 +0.4 178,010 + DDA3937_RS00755 0.40 -0.5 178,011 - DDA3937_RS00755 0.40 -0.5 178,011 - DDA3937_RS00755 0.40 -0.5 178,079 + DDA3937_RS00755 0.55 +0.2 178,094 + DDA3937_RS00755 0.58 -0.2 178,150 + -1.0 178,151 - DDA3937_RS00755 0.70 -1.0 178,247 + -0.7 178,493 + DDA3937_RS00760 0.25 -0.9
Or see this region's nucleotide sequence