Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00400 and DDA3937_RS00405 are separated by 3 nucleotides DDA3937_RS00405 and DDA3937_RS00410 are separated by 16 nucleotides
DDA3937_RS00400: DDA3937_RS00400 - signal transduction protein, at 93,813 to 95,483
_RS00400
DDA3937_RS00405: DDA3937_RS00405 - dihydrodipicolinate synthase family protein, at 95,487 to 96,446
_RS00405
DDA3937_RS00410: DDA3937_RS00410 - exo-alpha-sialidase, at 96,463 to 97,509
_RS00410
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 94.588 kb on + strand, within DDA3937_RS00400 at 94.589 kb on - strand, within DDA3937_RS00400 at 94.594 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.768 kb on - strand, within DDA3937_RS00400 at 95.025 kb on + strand, within DDA3937_RS00400 at 95.026 kb on - strand, within DDA3937_RS00400 at 95.026 kb on - strand, within DDA3937_RS00400 at 95.097 kb on + strand, within DDA3937_RS00400 at 95.280 kb on + strand, within DDA3937_RS00400 at 95.280 kb on + strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.370 kb on + strand at 95.435 kb on + strand at 95.435 kb on + strand at 95.436 kb on - strand at 95.436 kb on - strand at 95.436 kb on - strand at 95.481 kb on + strand at 95.481 kb on + strand at 95.481 kb on + strand at 95.482 kb on - strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.526 kb on + strand at 95.526 kb on + strand at 95.527 kb on - strand at 95.527 kb on - strand at 95.527 kb on - strand at 95.613 kb on + strand, within DDA3937_RS00405 at 95.614 kb on - strand, within DDA3937_RS00405 at 95.709 kb on - strand, within DDA3937_RS00405 at 95.709 kb on - strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.947 kb on - strand, within DDA3937_RS00405 at 95.952 kb on + strand, within DDA3937_RS00405 at 96.006 kb on + strand, within DDA3937_RS00405 at 96.144 kb on + strand, within DDA3937_RS00405 at 96.145 kb on - strand, within DDA3937_RS00405 at 96.180 kb on + strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.297 kb on + strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.314 kb on + strand, within DDA3937_RS00405 at 96.315 kb on - strand, within DDA3937_RS00405 at 96.514 kb on + strand at 96.514 kb on + strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.737 kb on - strand, within DDA3937_RS00410 at 96.737 kb on - strand, within DDA3937_RS00410 at 96.738 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.295 kb on - strand, within DDA3937_RS00410 at 97.311 kb on + strand, within DDA3937_RS00410 at 97.425 kb on + strand at 97.426 kb on - strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 94,588 + DDA3937_RS00400 0.46 +1.9 94,589 - DDA3937_RS00400 0.46 -1.2 94,594 - DDA3937_RS00400 0.47 +0.1 94,624 - DDA3937_RS00400 0.49 -0.2 94,624 - DDA3937_RS00400 0.49 -2.1 94,624 - DDA3937_RS00400 0.49 +0.3 94,624 - DDA3937_RS00400 0.49 -0.4 94,768 - DDA3937_RS00400 0.57 -1.0 95,025 + DDA3937_RS00400 0.73 +0.1 95,026 - DDA3937_RS00400 0.73 +0.0 95,026 - DDA3937_RS00400 0.73 +0.2 95,097 + DDA3937_RS00400 0.77 +0.3 95,280 + DDA3937_RS00400 0.88 +0.0 95,280 + DDA3937_RS00400 0.88 -0.7 95,281 - DDA3937_RS00400 0.88 -0.4 95,281 - DDA3937_RS00400 0.88 +1.4 95,281 - DDA3937_RS00400 0.88 -2.2 95,370 + +3.4 95,435 + -1.0 95,435 + -1.4 95,436 - +1.2 95,436 - -0.4 95,436 - +1.8 95,481 + -1.1 95,481 + -0.8 95,481 + -0.8 95,482 - +0.6 95,493 + +1.4 95,493 + -0.3 95,493 + +0.4 95,493 + +0.4 95,494 - +0.1 95,494 - +0.4 95,494 - +0.1 95,494 - -0.6 95,526 + -0.1 95,526 + +0.8 95,527 - -0.3 95,527 - -1.3 95,527 - +0.1 95,613 + DDA3937_RS00405 0.13 -0.2 95,614 - DDA3937_RS00405 0.13 +0.4 95,709 - DDA3937_RS00405 0.23 -0.7 95,709 - DDA3937_RS00405 0.23 +0.4 95,934 + DDA3937_RS00405 0.47 +0.2 95,934 + DDA3937_RS00405 0.47 +0.8 95,934 + DDA3937_RS00405 0.47 +0.0 95,935 - DDA3937_RS00405 0.47 +0.0 95,935 - DDA3937_RS00405 0.47 +0.4 95,935 - DDA3937_RS00405 0.47 +0.7 95,935 - DDA3937_RS00405 0.47 -1.7 95,935 - DDA3937_RS00405 0.47 +0.1 95,935 - DDA3937_RS00405 0.47 -0.6 95,935 - DDA3937_RS00405 0.47 -1.3 95,935 - DDA3937_RS00405 0.47 -0.5 95,935 - DDA3937_RS00405 0.47 +0.2 95,947 - DDA3937_RS00405 0.48 +0.1 95,952 + DDA3937_RS00405 0.48 +1.1 96,006 + DDA3937_RS00405 0.54 -0.2 96,144 + DDA3937_RS00405 0.68 +0.3 96,145 - DDA3937_RS00405 0.69 -0.7 96,180 + DDA3937_RS00405 0.72 -0.1 96,181 - DDA3937_RS00405 0.72 +0.5 96,181 - DDA3937_RS00405 0.72 +0.0 96,181 - DDA3937_RS00405 0.72 +0.2 96,181 - DDA3937_RS00405 0.72 +0.2 96,181 - DDA3937_RS00405 0.72 -0.1 96,297 + DDA3937_RS00405 0.84 -0.3 96,298 - DDA3937_RS00405 0.84 -0.2 96,298 - DDA3937_RS00405 0.84 -0.6 96,298 - DDA3937_RS00405 0.84 +0.8 96,298 - DDA3937_RS00405 0.84 +0.8 96,298 - DDA3937_RS00405 0.84 +0.4 96,314 + DDA3937_RS00405 0.86 -0.6 96,315 - DDA3937_RS00405 0.86 +1.4 96,514 + -0.1 96,514 + -0.2 96,515 - +0.2 96,515 - +0.4 96,515 - +1.0 96,515 - -0.5 96,515 - -0.2 96,515 - -0.6 96,736 + DDA3937_RS00410 0.26 -1.1 96,736 + DDA3937_RS00410 0.26 -0.2 96,736 + DDA3937_RS00410 0.26 +0.2 96,736 + DDA3937_RS00410 0.26 +1.8 96,736 + DDA3937_RS00410 0.26 -0.6 96,736 + DDA3937_RS00410 0.26 -0.1 96,736 + DDA3937_RS00410 0.26 -0.2 96,737 - DDA3937_RS00410 0.26 -1.0 96,737 - DDA3937_RS00410 0.26 -0.5 96,738 + DDA3937_RS00410 0.26 -2.0 97,219 + DDA3937_RS00410 0.72 -1.2 97,219 + DDA3937_RS00410 0.72 +0.5 97,219 + DDA3937_RS00410 0.72 -0.6 97,219 + DDA3937_RS00410 0.72 -1.5 97,295 - DDA3937_RS00410 0.79 -0.9 97,311 + DDA3937_RS00410 0.81 +1.0 97,425 + +0.3 97,426 - -0.8 97,445 + +0.2 97,445 + +0.2 97,445 + +0.6 97,445 + -0.1 97,445 + +0.5 97,445 + +1.9 97,445 + -0.2 97,446 - -1.6 97,446 - -1.2 97,446 - -0.0 97,446 - +0.1
Or see this region's nucleotide sequence