Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00180 and DDA3937_RS00185 are separated by 24 nucleotides DDA3937_RS00185 and DDA3937_RS00190 are separated by 54 nucleotides DDA3937_RS00190 and DDA3937_RS00195 are separated by 306 nucleotides
DDA3937_RS00180: DDA3937_RS00180 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 43,241 to 45,343
_RS00180
DDA3937_RS00185: DDA3937_RS00185 - DNA-directed RNA polymerase subunit omega, at 45,368 to 45,643
_RS00185
DDA3937_RS00190: DDA3937_RS00190 - guanylate kinase, at 45,698 to 46,321
_RS00190
DDA3937_RS00195: DDA3937_RS00195 - NAD-dependent DNA ligase LigB, at 46,628 to 48,310
_RS00195
Position (kb) 45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 45.340 kb on - strand at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.615 kb on - strand, within DDA3937_RS00185 at 45.633 kb on - strand at 45.633 kb on - strand at 45.644 kb on - strand at 45.651 kb on - strand at 45.651 kb on - strand at 45.685 kb on - strand at 45.685 kb on - strand at 45.685 kb on - strand at 45.710 kb on + strand at 45.711 kb on - strand at 45.711 kb on - strand at 45.723 kb on - strand at 46.341 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.491 kb on + strand at 46.492 kb on - strand at 46.493 kb on + strand at 46.558 kb on + strand at 46.558 kb on + strand at 46.558 kb on + strand at 46.558 kb on + strand at 46.559 kb on - strand at 46.577 kb on + strand at 46.577 kb on + strand at 46.578 kb on - strand at 46.578 kb on - strand at 46.578 kb on - strand at 46.580 kb on + strand at 46.580 kb on + strand at 46.580 kb on + strand at 46.580 kb on + strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 45,340 - -1.1 45,508 - DDA3937_RS00185 0.51 +0.2 45,508 - DDA3937_RS00185 0.51 +0.1 45,508 - DDA3937_RS00185 0.51 -1.6 45,508 - DDA3937_RS00185 0.51 -0.8 45,508 - DDA3937_RS00185 0.51 -0.9 45,508 - DDA3937_RS00185 0.51 +0.2 45,508 - DDA3937_RS00185 0.51 -1.4 45,615 - DDA3937_RS00185 0.89 -0.4 45,633 - -1.6 45,633 - +0.1 45,644 - +0.2 45,651 - +0.8 45,651 - -1.2 45,685 - -0.5 45,685 - -0.2 45,685 - -0.2 45,710 + +1.0 45,711 - -0.6 45,711 - -0.5 45,723 - -1.2 46,341 - -0.2 46,386 - +0.7 46,386 - +0.5 46,386 - +0.5 46,388 - -1.0 46,388 - -2.5 46,388 - +0.1 46,388 - +0.0 46,388 - -0.1 46,388 - -1.6 46,388 - +0.6 46,388 - -0.1 46,388 - +0.0 46,491 + -0.3 46,492 - +0.3 46,493 + -0.2 46,558 + -1.0 46,558 + -0.3 46,558 + -1.1 46,558 + +0.5 46,559 - -0.8 46,577 + +0.6 46,577 + +1.0 46,578 - -2.2 46,578 - +0.4 46,578 - +0.3 46,580 + -0.9 46,580 + -0.3 46,580 + -0.7 46,580 + +0.8 46,581 - -1.4 46,581 - +0.3 46,581 - +0.3 46,581 - +0.4 46,581 - -0.7 46,581 - +0.5 46,581 - -2.1
Or see this region's nucleotide sequence