Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00155 and DDA3937_RS00160 are separated by 63 nucleotides DDA3937_RS00160 and DDA3937_RS00165 are separated by 155 nucleotides
DDA3937_RS00155: DDA3937_RS00155 - fatty acid biosynthesis protein FabY, at 35,988 to 36,929
_RS00155
DDA3937_RS00160: DDA3937_RS00160 - AsmA family protein, at 36,993 to 38,735
_RS00160
DDA3937_RS00165: DDA3937_RS00165 - uracil-xanthine permease, at 38,891 to 40,279
_RS00165
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 35.994 kb on + strand at 35.994 kb on + strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.063 kb on - strand at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.174 kb on - strand, within DDA3937_RS00155 at 36.176 kb on + strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.227 kb on - strand, within DDA3937_RS00155 at 36.308 kb on + strand, within DDA3937_RS00155 at 36.309 kb on - strand, within DDA3937_RS00155 at 36.413 kb on + strand, within DDA3937_RS00155 at 36.414 kb on - strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.484 kb on - strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.531 kb on + strand, within DDA3937_RS00155 at 36.532 kb on - strand, within DDA3937_RS00155 at 36.548 kb on + strand, within DDA3937_RS00155 at 36.551 kb on + strand, within DDA3937_RS00155 at 36.551 kb on + strand, within DDA3937_RS00155 at 36.552 kb on - strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.687 kb on - strand, within DDA3937_RS00155 at 36.687 kb on - strand, within DDA3937_RS00155 at 36.839 kb on + strand at 36.840 kb on - strand at 36.863 kb on + strand at 36.863 kb on + strand at 36.863 kb on + strand at 36.867 kb on + strand at 36.867 kb on + strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.979 kb on - strand at 36.995 kb on - strand at 37.277 kb on + strand, within DDA3937_RS00160 at 37.278 kb on - strand, within DDA3937_RS00160 at 37.562 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.655 kb on - strand, within DDA3937_RS00160 at 37.655 kb on - strand, within DDA3937_RS00160 at 37.823 kb on + strand, within DDA3937_RS00160 at 37.824 kb on - strand, within DDA3937_RS00160 at 38.112 kb on + strand, within DDA3937_RS00160 at 38.144 kb on + strand at 38.165 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.203 kb on - strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.264 kb on - strand, within DDA3937_RS00160 at 38.390 kb on + strand, within DDA3937_RS00160 at 38.391 kb on - strand, within DDA3937_RS00160 at 38.391 kb on - strand, within DDA3937_RS00160 at 38.484 kb on - strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.488 kb on - strand, within DDA3937_RS00160 at 38.488 kb on - strand, within DDA3937_RS00160 at 38.633 kb on + strand at 38.633 kb on + strand at 38.633 kb on + strand at 38.633 kb on + strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.661 kb on + strand at 38.662 kb on - strand at 38.662 kb on - strand at 38.662 kb on - strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.698 kb on - strand at 38.727 kb on - strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.773 kb on + strand at 38.773 kb on + strand at 38.773 kb on + strand at 38.805 kb on - strand at 38.805 kb on - strand at 38.809 kb on + strand at 38.809 kb on + strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.812 kb on + strand at 38.812 kb on + strand at 38.813 kb on - strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.822 kb on - strand at 38.822 kb on - strand at 38.822 kb on - strand at 38.825 kb on + strand at 38.825 kb on + strand at 38.838 kb on + strand at 38.838 kb on + strand at 38.838 kb on + strand at 38.839 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.856 kb on + strand at 38.856 kb on + strand at 38.856 kb on + strand at 38.857 kb on - strand at 38.863 kb on + strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.893 kb on - strand at 38.930 kb on - strand at 38.930 kb on - strand at 39.230 kb on + strand at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.231 kb on - strand, within DDA3937_RS00165 at 39.231 kb on - strand, within DDA3937_RS00165 at 39.234 kb on + strand, within DDA3937_RS00165 at 39.234 kb on + strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.271 kb on + strand, within DDA3937_RS00165 at 39.272 kb on - strand, within DDA3937_RS00165 at 39.301 kb on + strand, within DDA3937_RS00165 at 39.301 kb on + strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.370 kb on - strand, within DDA3937_RS00165 at 39.370 kb on - strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.499 kb on - strand, within DDA3937_RS00165 at 39.502 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 35,994 + -0.3 35,994 + -1.4 35,995 - -0.1 35,995 - +0.6 35,995 - +0.4 35,995 - -0.4 35,995 - +0.1 36,033 + +1.4 36,033 + +1.4 36,033 + -0.6 36,033 + -1.1 36,033 + +0.1 36,033 + +1.1 36,034 - -1.1 36,034 - +1.4 36,034 - +1.8 36,034 - +0.6 36,063 - -1.4 36,102 + DDA3937_RS00155 0.12 -0.7 36,102 + DDA3937_RS00155 0.12 -0.2 36,102 + DDA3937_RS00155 0.12 -0.6 36,174 - DDA3937_RS00155 0.20 +0.2 36,176 + DDA3937_RS00155 0.20 -0.2 36,177 - DDA3937_RS00155 0.20 +0.0 36,177 - DDA3937_RS00155 0.20 -0.2 36,177 - DDA3937_RS00155 0.20 -0.0 36,227 - DDA3937_RS00155 0.25 -0.6 36,308 + DDA3937_RS00155 0.34 +0.6 36,309 - DDA3937_RS00155 0.34 -0.9 36,413 + DDA3937_RS00155 0.45 +0.9 36,414 - DDA3937_RS00155 0.45 +1.4 36,483 + DDA3937_RS00155 0.53 -0.8 36,483 + DDA3937_RS00155 0.53 -0.6 36,483 + DDA3937_RS00155 0.53 -0.5 36,483 + DDA3937_RS00155 0.53 -0.5 36,484 - DDA3937_RS00155 0.53 +0.3 36,517 + DDA3937_RS00155 0.56 -0.0 36,517 + DDA3937_RS00155 0.56 -0.1 36,517 + DDA3937_RS00155 0.56 +0.9 36,518 - DDA3937_RS00155 0.56 +0.4 36,518 - DDA3937_RS00155 0.56 +0.4 36,518 - DDA3937_RS00155 0.56 -0.3 36,518 - DDA3937_RS00155 0.56 +0.4 36,531 + DDA3937_RS00155 0.58 -2.0 36,532 - DDA3937_RS00155 0.58 -1.5 36,548 + DDA3937_RS00155 0.59 +0.9 36,551 + DDA3937_RS00155 0.60 +0.0 36,551 + DDA3937_RS00155 0.60 +1.4 36,552 - DDA3937_RS00155 0.60 -1.1 36,590 + DDA3937_RS00155 0.64 -0.5 36,590 + DDA3937_RS00155 0.64 -0.2 36,590 + DDA3937_RS00155 0.64 -0.2 36,590 + DDA3937_RS00155 0.64 -0.2 36,590 + DDA3937_RS00155 0.64 +0.4 36,590 + DDA3937_RS00155 0.64 -2.0 36,590 + DDA3937_RS00155 0.64 +0.6 36,590 + DDA3937_RS00155 0.64 +0.9 36,591 - DDA3937_RS00155 0.64 -0.4 36,591 - DDA3937_RS00155 0.64 -1.6 36,591 - DDA3937_RS00155 0.64 -2.7 36,591 - DDA3937_RS00155 0.64 -0.4 36,591 - DDA3937_RS00155 0.64 +0.9 36,591 - DDA3937_RS00155 0.64 +0.2 36,591 - DDA3937_RS00155 0.64 +2.2 36,591 - -0.4 36,591 - DDA3937_RS00155 0.64 +0.8 36,591 - -0.2 36,591 - DDA3937_RS00155 0.64 +0.9 36,591 - DDA3937_RS00155 0.64 +0.5 36,591 - DDA3937_RS00155 0.64 -1.0 36,686 + DDA3937_RS00155 0.74 -1.2 36,686 + DDA3937_RS00155 0.74 -0.1 36,686 + DDA3937_RS00155 0.74 -1.4 36,686 + DDA3937_RS00155 0.74 +1.1 36,686 + DDA3937_RS00155 0.74 -2.4 36,686 + DDA3937_RS00155 0.74 -2.0 36,687 - DDA3937_RS00155 0.74 +0.7 36,687 - DDA3937_RS00155 0.74 -0.4 36,839 + +0.4 36,840 - +0.5 36,863 + +0.2 36,863 + -0.4 36,863 + -1.6 36,867 + -0.2 36,867 + +1.1 36,868 - +0.4 36,868 - -2.0 36,868 - -0.8 36,868 - -0.8 36,868 - +0.1 36,978 + -0.4 36,978 + +0.2 36,978 + -0.8 36,978 + +0.6 36,979 - +0.6 36,995 - -1.4 37,277 + DDA3937_RS00160 0.16 -0.3 37,278 - DDA3937_RS00160 0.16 +0.6 37,562 + DDA3937_RS00160 0.33 -0.2 37,654 + DDA3937_RS00160 0.38 -0.0 37,654 + DDA3937_RS00160 0.38 +2.4 37,654 + DDA3937_RS00160 0.38 +0.0 37,655 - DDA3937_RS00160 0.38 -1.0 37,655 - DDA3937_RS00160 0.38 +0.2 37,823 + DDA3937_RS00160 0.48 -1.0 37,824 - DDA3937_RS00160 0.48 +0.8 38,112 + DDA3937_RS00160 0.64 +0.6 38,144 + -0.2 38,165 + DDA3937_RS00160 0.67 -0.2 38,187 + DDA3937_RS00160 0.69 -1.2 38,187 + DDA3937_RS00160 0.69 +0.2 38,187 + DDA3937_RS00160 0.69 +0.4 38,187 + DDA3937_RS00160 0.69 -0.3 38,187 + DDA3937_RS00160 0.69 +2.1 38,203 - DDA3937_RS00160 0.69 -0.2 38,259 + DDA3937_RS00160 0.73 +0.2 38,259 + DDA3937_RS00160 0.73 -1.4 38,259 + DDA3937_RS00160 0.73 -0.6 38,259 + DDA3937_RS00160 0.73 -0.8 38,260 - DDA3937_RS00160 0.73 -2.0 38,260 - DDA3937_RS00160 0.73 -0.6 38,260 - DDA3937_RS00160 0.73 +0.1 38,260 - DDA3937_RS00160 0.73 -0.0 38,260 - DDA3937_RS00160 0.73 +0.8 38,263 + DDA3937_RS00160 0.73 +0.2 38,263 + DDA3937_RS00160 0.73 +0.8 38,263 + DDA3937_RS00160 0.73 -0.6 38,264 - DDA3937_RS00160 0.73 +0.1 38,390 + DDA3937_RS00160 0.80 -0.1 38,391 - DDA3937_RS00160 0.80 +0.7 38,391 - DDA3937_RS00160 0.80 -0.4 38,484 - DDA3937_RS00160 0.86 -0.3 38,487 + DDA3937_RS00160 0.86 -1.6 38,487 + DDA3937_RS00160 0.86 -0.1 38,487 + +1.4 38,487 + DDA3937_RS00160 0.86 +0.4 38,487 + DDA3937_RS00160 0.86 +0.6 38,488 - DDA3937_RS00160 0.86 -0.5 38,488 - DDA3937_RS00160 0.86 -0.2 38,633 + +0.1 38,633 + +0.1 38,633 + +0.6 38,633 + +0.6 38,634 - -0.1 38,634 - -0.7 38,634 - +0.4 38,634 - -0.0 38,634 - +0.6 38,634 - +0.9 38,634 - -0.6 38,634 - +0.4 38,661 + -0.2 38,662 - +0.2 38,662 - +0.1 38,662 - -1.3 38,664 + +0.4 38,664 + -0.6 38,664 + -0.2 38,664 + -0.9 38,665 - +0.5 38,665 - +0.4 38,665 - +0.0 38,665 - -1.8 38,668 + -0.4 38,668 + -0.7 38,668 + +0.5 38,668 + -0.1 38,668 + -3.4 38,668 + -0.6 38,668 + +0.7 38,668 + -0.6 38,668 + -0.2 38,668 + -0.7 38,669 - +1.1 38,669 - -0.5 38,669 - -0.9 38,669 - -0.3 38,669 - -1.4 38,698 - -0.2 38,727 - -0.8 38,740 + -1.4 38,740 + -0.4 38,740 + +0.5 38,740 + +0.3 38,741 - +0.4 38,741 - -1.3 38,741 - +1.4 38,741 - +2.8 38,773 + -0.2 38,773 + -0.8 38,773 + -1.2 38,805 - -0.7 38,805 - -0.2 38,809 + -0.2 38,809 + -0.1 38,810 - +0.7 38,810 - +0.8 38,810 - +0.4 38,810 - -1.0 38,810 - -0.1 38,810 - -0.4 38,812 + -0.8 38,812 + +0.5 38,813 - +0.4 38,821 + -0.2 38,821 + -0.1 38,821 + +1.9 38,821 + +0.6 38,822 - -1.0 38,822 - -1.1 38,822 - -1.0 38,825 + -0.1 38,825 + +0.6 38,838 + +0.9 38,838 + -0.0 38,838 + -0.7 38,839 - +1.1 38,854 - +0.4 38,854 - -0.5 38,854 - -0.5 38,854 - +0.5 38,856 + +1.9 38,856 + +0.5 38,856 + -0.1 38,857 - +0.1 38,863 + +0.4 38,864 - -0.0 38,864 - -1.1 38,864 - +0.2 38,864 - -0.5 38,893 - +1.2 38,930 - -0.3 38,930 - +0.2 39,230 + +1.4 39,230 + DDA3937_RS00165 0.24 +0.7 39,230 + DDA3937_RS00165 0.24 -1.2 39,230 + DDA3937_RS00165 0.24 -1.0 39,230 + DDA3937_RS00165 0.24 -2.2 39,230 + DDA3937_RS00165 0.24 -0.2 39,231 - DDA3937_RS00165 0.24 +0.4 39,231 - DDA3937_RS00165 0.24 -0.9 39,234 + DDA3937_RS00165 0.25 +0.2 39,234 + DDA3937_RS00165 0.25 -0.1 39,235 - DDA3937_RS00165 0.25 +1.4 39,235 - DDA3937_RS00165 0.25 -0.5 39,235 - DDA3937_RS00165 0.25 -0.6 39,271 + DDA3937_RS00165 0.27 -0.6 39,272 - DDA3937_RS00165 0.27 +0.3 39,301 + DDA3937_RS00165 0.30 +0.7 39,301 + DDA3937_RS00165 0.30 +2.4 39,302 - DDA3937_RS00165 0.30 -0.2 39,302 - DDA3937_RS00165 0.30 +0.2 39,302 - DDA3937_RS00165 0.30 +1.0 39,302 - DDA3937_RS00165 0.30 -0.2 39,369 + DDA3937_RS00165 0.34 -0.2 39,369 + DDA3937_RS00165 0.34 +1.0 39,369 + DDA3937_RS00165 0.34 +0.0 39,369 + DDA3937_RS00165 0.34 -2.3 39,369 + DDA3937_RS00165 0.34 +0.5 39,370 - DDA3937_RS00165 0.34 -0.6 39,370 - DDA3937_RS00165 0.34 -1.0 39,498 + DDA3937_RS00165 0.44 -1.1 39,498 + DDA3937_RS00165 0.44 -0.2 39,499 - DDA3937_RS00165 0.44 -0.4 39,502 - DDA3937_RS00165 0.44 -1.0 39,618 - DDA3937_RS00165 0.52 +0.8 39,618 - DDA3937_RS00165 0.52 -0.2
Or see this region's nucleotide sequence