Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20890 and DDA3937_RS23455 are separated by 158 nucleotides DDA3937_RS23455 and DDA3937_RS20900 are separated by 10 nucleotides
DDA3937_RS20890: DDA3937_RS20890 - argininosuccinate synthase, at 4,749,208 to 4,750,557
_RS20890
DDA3937_RS23455: DDA3937_RS23455 - hypothetical protein, at 4,750,716 to 4,750,874
_RS23455
DDA3937_RS20900: DDA3937_RS20900 - nickel/cobalt efflux protein RcnA, at 4,750,885 to 4,751,829
_RS20900
Position (kb) 4750
4751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4749.981 kb on + strand, within DDA3937_RS20890 at 4749.986 kb on + strand, within DDA3937_RS20890 at 4749.987 kb on - strand at 4749.987 kb on - strand, within DDA3937_RS20890 at 4749.987 kb on - strand, within DDA3937_RS20890 at 4750.097 kb on + strand, within DDA3937_RS20890 at 4750.097 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.185 kb on + strand, within DDA3937_RS20890 at 4750.186 kb on - strand, within DDA3937_RS20890 at 4750.186 kb on - strand, within DDA3937_RS20890 at 4750.186 kb on - strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.263 kb on - strand, within DDA3937_RS20890 at 4750.269 kb on + strand, within DDA3937_RS20890 at 4750.371 kb on - strand, within DDA3937_RS20890 at 4750.371 kb on - strand, within DDA3937_RS20890 at 4750.400 kb on + strand, within DDA3937_RS20890 at 4750.400 kb on + strand, within DDA3937_RS20890 at 4750.436 kb on + strand at 4750.436 kb on + strand at 4750.436 kb on + strand at 4750.437 kb on - strand at 4750.437 kb on - strand at 4750.437 kb on - strand at 4750.437 kb on - strand at 4750.442 kb on + strand at 4750.443 kb on - strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.562 kb on - strand at 4750.562 kb on - strand at 4750.562 kb on - strand at 4750.562 kb on - strand at 4750.590 kb on + strand at 4750.591 kb on - strand at 4750.591 kb on - strand at 4750.596 kb on + strand at 4750.596 kb on + strand at 4750.597 kb on - strand at 4750.730 kb on - strand at 4750.858 kb on - strand, within DDA3937_RS23455 at 4750.858 kb on - strand, within DDA3937_RS23455 at 4750.858 kb on - strand, within DDA3937_RS23455 at 4750.859 kb on + strand at 4750.860 kb on - strand at 4750.860 kb on - strand at 4750.860 kb on - strand at 4750.870 kb on + strand at 4750.872 kb on + strand at 4750.872 kb on + strand at 4750.873 kb on - strand at 4750.873 kb on - strand at 4750.887 kb on - strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4751.080 kb on + strand, within DDA3937_RS20900 at 4751.080 kb on + strand, within DDA3937_RS20900 at 4751.081 kb on - strand, within DDA3937_RS20900 at 4751.081 kb on - strand, within DDA3937_RS20900 at 4751.100 kb on + strand, within DDA3937_RS20900 at 4751.100 kb on + strand, within DDA3937_RS20900 at 4751.101 kb on - strand, within DDA3937_RS20900 at 4751.101 kb on - strand, within DDA3937_RS20900 at 4751.118 kb on + strand, within DDA3937_RS20900 at 4751.118 kb on + strand, within DDA3937_RS20900 at 4751.118 kb on + strand, within DDA3937_RS20900 at 4751.119 kb on - strand, within DDA3937_RS20900 at 4751.119 kb on - strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.227 kb on + strand, within DDA3937_RS20900 at 4751.227 kb on + strand, within DDA3937_RS20900 at 4751.227 kb on + strand, within DDA3937_RS20900 at 4751.235 kb on + strand, within DDA3937_RS20900 at 4751.264 kb on + strand, within DDA3937_RS20900 at 4751.323 kb on - strand, within DDA3937_RS20900 at 4751.323 kb on - strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.461 kb on - strand, within DDA3937_RS20900 at 4751.499 kb on + strand, within DDA3937_RS20900 at 4751.517 kb on + strand at 4751.518 kb on - strand, within DDA3937_RS20900 at 4751.597 kb on + strand, within DDA3937_RS20900 at 4751.598 kb on - strand, within DDA3937_RS20900 at 4751.598 kb on - strand, within DDA3937_RS20900 at 4751.626 kb on + strand, within DDA3937_RS20900 at 4751.635 kb on - strand, within DDA3937_RS20900 at 4751.647 kb on - strand, within DDA3937_RS20900 at 4751.700 kb on + strand, within DDA3937_RS20900 at 4751.775 kb on + strand at 4751.775 kb on + strand at 4751.776 kb on - strand at 4751.812 kb on + strand at 4751.829 kb on + strand at 4751.829 kb on + strand at 4751.829 kb on + strand at 4751.829 kb on + strand at 4751.829 kb on + strand at 4751.829 kb on + strand at 4751.829 kb on + strand at 4751.830 kb on - strand at 4751.830 kb on - strand at 4751.830 kb on - strand at 4751.830 kb on - strand at 4751.833 kb on + strand at 4751.833 kb on + strand at 4751.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,749,981 + DDA3937_RS20890 0.57 -1.1 4,749,986 + DDA3937_RS20890 0.58 -0.1 4,749,987 - -1.2 4,749,987 - DDA3937_RS20890 0.58 -0.2 4,749,987 - DDA3937_RS20890 0.58 +0.3 4,750,097 + DDA3937_RS20890 0.66 -0.3 4,750,097 + DDA3937_RS20890 0.66 -0.6 4,750,163 + DDA3937_RS20890 0.71 +0.5 4,750,163 + DDA3937_RS20890 0.71 -0.8 4,750,163 + DDA3937_RS20890 0.71 +0.3 4,750,163 + DDA3937_RS20890 0.71 -0.0 4,750,164 - DDA3937_RS20890 0.71 -0.4 4,750,164 - DDA3937_RS20890 0.71 -0.9 4,750,164 - DDA3937_RS20890 0.71 -1.9 4,750,164 - DDA3937_RS20890 0.71 -0.0 4,750,164 - DDA3937_RS20890 0.71 -1.7 4,750,164 - DDA3937_RS20890 0.71 +0.2 4,750,185 + DDA3937_RS20890 0.72 -0.6 4,750,186 - DDA3937_RS20890 0.72 -0.1 4,750,186 - DDA3937_RS20890 0.72 +0.0 4,750,186 - DDA3937_RS20890 0.72 -0.2 4,750,262 + DDA3937_RS20890 0.78 -0.1 4,750,262 + DDA3937_RS20890 0.78 -0.7 4,750,262 + DDA3937_RS20890 0.78 +0.3 4,750,262 + DDA3937_RS20890 0.78 -0.2 4,750,263 - DDA3937_RS20890 0.78 +0.7 4,750,269 + DDA3937_RS20890 0.79 -1.6 4,750,371 - DDA3937_RS20890 0.86 -0.1 4,750,371 - DDA3937_RS20890 0.86 +0.3 4,750,400 + DDA3937_RS20890 0.88 +0.3 4,750,400 + DDA3937_RS20890 0.88 -0.2 4,750,436 + +0.5 4,750,436 + -0.9 4,750,436 + -0.0 4,750,437 - +0.3 4,750,437 - -1.1 4,750,437 - -1.1 4,750,437 - -0.6 4,750,442 + -0.7 4,750,443 - -1.3 4,750,557 + -0.8 4,750,557 + -0.1 4,750,557 + -0.4 4,750,557 + +2.3 4,750,557 + -0.5 4,750,558 - +0.6 4,750,558 - +0.5 4,750,558 - +1.3 4,750,558 - +0.0 4,750,558 - -0.2 4,750,561 + -0.2 4,750,561 + -2.2 4,750,561 + -0.3 4,750,561 + +0.4 4,750,561 + -0.5 4,750,561 + -0.7 4,750,562 - -1.1 4,750,562 - +0.6 4,750,562 - -0.6 4,750,562 - -0.0 4,750,590 + -0.9 4,750,591 - -0.0 4,750,591 - -1.0 4,750,596 + +0.9 4,750,596 + -2.2 4,750,597 - -0.4 4,750,730 - -0.6 4,750,858 - DDA3937_RS23455 0.89 -1.5 4,750,858 - DDA3937_RS23455 0.89 -0.4 4,750,858 - DDA3937_RS23455 0.89 -0.4 4,750,859 + -0.7 4,750,860 - -0.4 4,750,860 - +0.9 4,750,860 - -0.2 4,750,870 + +0.4 4,750,872 + +0.5 4,750,872 + +0.3 4,750,873 - +0.3 4,750,873 - -0.1 4,750,887 - -0.4 4,750,920 + -0.7 4,750,920 + -0.9 4,750,920 + -0.6 4,750,920 + -1.5 4,750,920 + -0.2 4,750,920 + +0.2 4,750,920 + +0.5 4,750,921 - -1.8 4,750,921 - -0.0 4,750,921 - -0.7 4,750,921 - -0.1 4,750,921 - +1.3 4,750,921 - -0.3 4,750,921 - +0.0 4,750,922 + +0.3 4,750,922 + -1.5 4,750,922 + +1.0 4,750,922 + +0.2 4,750,922 + -1.2 4,750,922 + -0.8 4,750,922 + -0.2 4,750,922 + +0.2 4,750,922 + -1.0 4,750,922 + -1.7 4,750,922 + -0.2 4,750,923 - -0.8 4,750,923 - +0.5 4,750,923 - +0.6 4,750,923 - +0.3 4,750,923 - +0.8 4,750,923 - +0.3 4,751,080 + DDA3937_RS20900 0.21 -1.7 4,751,080 + DDA3937_RS20900 0.21 +0.1 4,751,081 - DDA3937_RS20900 0.21 -1.5 4,751,081 - DDA3937_RS20900 0.21 -0.2 4,751,100 + DDA3937_RS20900 0.23 -0.2 4,751,100 + DDA3937_RS20900 0.23 -1.5 4,751,101 - DDA3937_RS20900 0.23 -0.6 4,751,101 - DDA3937_RS20900 0.23 -1.7 4,751,118 + DDA3937_RS20900 0.25 -0.2 4,751,118 + DDA3937_RS20900 0.25 -1.5 4,751,118 + DDA3937_RS20900 0.25 -0.2 4,751,119 - DDA3937_RS20900 0.25 -0.5 4,751,119 - DDA3937_RS20900 0.25 -0.4 4,751,122 + DDA3937_RS20900 0.25 +0.1 4,751,122 + DDA3937_RS20900 0.25 +0.7 4,751,122 + DDA3937_RS20900 0.25 +0.6 4,751,122 + DDA3937_RS20900 0.25 -0.2 4,751,123 - DDA3937_RS20900 0.25 -0.7 4,751,123 - DDA3937_RS20900 0.25 -1.2 4,751,123 - DDA3937_RS20900 0.25 +1.1 4,751,123 - DDA3937_RS20900 0.25 +0.3 4,751,123 - DDA3937_RS20900 0.25 +0.2 4,751,123 - DDA3937_RS20900 0.25 +0.5 4,751,123 - DDA3937_RS20900 0.25 -0.7 4,751,123 - DDA3937_RS20900 0.25 -0.4 4,751,227 + DDA3937_RS20900 0.36 -1.4 4,751,227 + DDA3937_RS20900 0.36 -0.0 4,751,227 + DDA3937_RS20900 0.36 +0.4 4,751,235 + DDA3937_RS20900 0.37 -1.2 4,751,264 + DDA3937_RS20900 0.40 +1.0 4,751,323 - DDA3937_RS20900 0.46 -0.3 4,751,323 - DDA3937_RS20900 0.46 -0.2 4,751,460 + DDA3937_RS20900 0.61 -0.0 4,751,460 + DDA3937_RS20900 0.61 +1.0 4,751,460 + DDA3937_RS20900 0.61 +0.4 4,751,460 + DDA3937_RS20900 0.61 +0.0 4,751,461 - DDA3937_RS20900 0.61 +0.2 4,751,499 + DDA3937_RS20900 0.65 +0.2 4,751,517 + +1.3 4,751,518 - DDA3937_RS20900 0.67 -0.5 4,751,597 + DDA3937_RS20900 0.75 -1.1 4,751,598 - DDA3937_RS20900 0.75 -0.4 4,751,598 - DDA3937_RS20900 0.75 +0.2 4,751,626 + DDA3937_RS20900 0.78 +0.3 4,751,635 - DDA3937_RS20900 0.79 -2.7 4,751,647 - DDA3937_RS20900 0.81 -1.5 4,751,700 + DDA3937_RS20900 0.86 -0.6 4,751,775 + +0.0 4,751,775 + +0.5 4,751,776 - -0.1 4,751,812 + +0.3 4,751,829 + -0.1 4,751,829 + -0.7 4,751,829 + +0.1 4,751,829 + +0.0 4,751,829 + -1.8 4,751,829 + -0.2 4,751,829 + +0.8 4,751,830 - -0.6 4,751,830 - -0.2 4,751,830 - +0.3 4,751,830 - -0.4 4,751,833 + +0.3 4,751,833 + +0.0 4,751,833 + +0.2
Or see this region's nucleotide sequence