Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03980 and DDA3937_RS21900 are separated by 36 nucleotides DDA3937_RS21900 and DDA3937_RS03985 are separated by 217 nucleotides
DDA3937_RS03980: DDA3937_RS03980 - LysR family transcriptional regulator, at 888,714 to 889,628
_RS03980
DDA3937_RS21900: DDA3937_RS21900 - entry exclusion lipoprotein TrbK, at 889,665 to 889,913
_RS21900
DDA3937_RS03985: DDA3937_RS03985 - conjugal transfer protein TraG, at 890,131 to 892,086
_RS03985
Position (kb) 889
890 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 888.735 kb on + strand at 888.736 kb on - strand at 888.791 kb on + strand at 888.792 kb on - strand at 888.821 kb on + strand, within DDA3937_RS03980 at 888.822 kb on - strand, within DDA3937_RS03980 at 888.859 kb on + strand, within DDA3937_RS03980 at 888.860 kb on - strand, within DDA3937_RS03980 at 888.860 kb on - strand, within DDA3937_RS03980 at 888.901 kb on + strand, within DDA3937_RS03980 at 888.979 kb on - strand, within DDA3937_RS03980 at 889.014 kb on - strand at 889.014 kb on - strand, within DDA3937_RS03980 at 889.016 kb on + strand at 889.076 kb on + strand, within DDA3937_RS03980 at 889.134 kb on + strand, within DDA3937_RS03980 at 889.134 kb on + strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.178 kb on + strand, within DDA3937_RS03980 at 889.178 kb on + strand, within DDA3937_RS03980 at 889.179 kb on - strand, within DDA3937_RS03980 at 889.179 kb on - strand, within DDA3937_RS03980 at 889.246 kb on - strand, within DDA3937_RS03980 at 889.306 kb on + strand, within DDA3937_RS03980 at 889.306 kb on + strand, within DDA3937_RS03980 at 889.306 kb on + strand, within DDA3937_RS03980 at 889.307 kb on - strand, within DDA3937_RS03980 at 889.307 kb on - strand, within DDA3937_RS03980 at 889.307 kb on - strand, within DDA3937_RS03980 at 889.451 kb on + strand, within DDA3937_RS03980 at 889.452 kb on - strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.522 kb on - strand, within DDA3937_RS03980 at 889.522 kb on - strand, within DDA3937_RS03980 at 889.659 kb on - strand at 889.665 kb on - strand at 889.742 kb on - strand, within DDA3937_RS21900 at 889.742 kb on - strand, within DDA3937_RS21900 at 889.750 kb on + strand, within DDA3937_RS21900 at 889.750 kb on + strand, within DDA3937_RS21900 at 889.772 kb on - strand, within DDA3937_RS21900 at 889.881 kb on + strand, within DDA3937_RS21900 at 890.002 kb on - strand at 890.003 kb on + strand at 890.003 kb on + strand at 890.004 kb on - strand at 890.092 kb on + strand at 890.147 kb on + strand at 890.153 kb on + strand at 890.154 kb on - strand at 890.200 kb on + strand at 890.285 kb on - strand at 890.329 kb on + strand, within DDA3937_RS03985 at 890.449 kb on + strand, within DDA3937_RS03985 at 890.481 kb on + strand, within DDA3937_RS03985 at 890.501 kb on - strand, within DDA3937_RS03985 at 890.532 kb on + strand at 890.654 kb on + strand, within DDA3937_RS03985 at 890.654 kb on + strand, within DDA3937_RS03985 at 890.755 kb on + strand, within DDA3937_RS03985 at 890.756 kb on - strand, within DDA3937_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 888,735 + -1.7 888,736 - -1.6 888,791 + +0.5 888,792 - +0.4 888,821 + DDA3937_RS03980 0.12 -0.0 888,822 - DDA3937_RS03980 0.12 -0.2 888,859 + DDA3937_RS03980 0.16 -0.7 888,860 - DDA3937_RS03980 0.16 +0.5 888,860 - DDA3937_RS03980 0.16 +0.1 888,901 + DDA3937_RS03980 0.20 +0.4 888,979 - DDA3937_RS03980 0.29 +0.5 889,014 - +3.1 889,014 - DDA3937_RS03980 0.33 -0.0 889,016 + +0.1 889,076 + DDA3937_RS03980 0.40 +0.8 889,134 + DDA3937_RS03980 0.46 -0.9 889,134 + DDA3937_RS03980 0.46 +0.6 889,135 - DDA3937_RS03980 0.46 +0.3 889,135 - DDA3937_RS03980 0.46 +0.0 889,135 - DDA3937_RS03980 0.46 -1.5 889,135 - DDA3937_RS03980 0.46 +0.5 889,178 + DDA3937_RS03980 0.51 -0.8 889,178 + DDA3937_RS03980 0.51 +0.7 889,179 - DDA3937_RS03980 0.51 +0.2 889,179 - DDA3937_RS03980 0.51 -0.3 889,246 - DDA3937_RS03980 0.58 +0.6 889,306 + DDA3937_RS03980 0.65 -0.4 889,306 + DDA3937_RS03980 0.65 -0.9 889,306 + DDA3937_RS03980 0.65 -1.5 889,307 - DDA3937_RS03980 0.65 -0.1 889,307 - DDA3937_RS03980 0.65 +0.1 889,307 - DDA3937_RS03980 0.65 +0.4 889,451 + DDA3937_RS03980 0.81 -0.1 889,452 - DDA3937_RS03980 0.81 -0.9 889,521 + DDA3937_RS03980 0.88 -1.1 889,521 + DDA3937_RS03980 0.88 -0.0 889,521 + DDA3937_RS03980 0.88 -1.9 889,521 + DDA3937_RS03980 0.88 -0.1 889,521 + DDA3937_RS03980 0.88 -0.4 889,522 - DDA3937_RS03980 0.88 -0.3 889,522 - DDA3937_RS03980 0.88 -0.0 889,659 - +0.5 889,665 - +0.1 889,742 - DDA3937_RS21900 0.31 -0.3 889,742 - DDA3937_RS21900 0.31 -1.4 889,750 + DDA3937_RS21900 0.34 -0.7 889,750 + DDA3937_RS21900 0.34 +0.1 889,772 - DDA3937_RS21900 0.43 -0.0 889,881 + DDA3937_RS21900 0.87 -0.9 890,002 - -0.2 890,003 + -0.9 890,003 + -0.2 890,004 - +1.4 890,092 + +2.1 890,147 + +0.3 890,153 + +0.5 890,154 - +0.4 890,200 + -1.7 890,285 - -1.3 890,329 + DDA3937_RS03985 0.10 +0.5 890,449 + DDA3937_RS03985 0.16 +0.3 890,481 + DDA3937_RS03985 0.18 +0.2 890,501 - DDA3937_RS03985 0.19 +0.3 890,532 + +0.1 890,654 + DDA3937_RS03985 0.27 +0.2 890,654 + DDA3937_RS03985 0.27 +0.0 890,755 + DDA3937_RS03985 0.32 +0.4 890,756 - DDA3937_RS03985 0.32 +1.1
Or see this region's nucleotide sequence