Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21130 and DDA3937_RS21135 are separated by 140 nucleotides DDA3937_RS21135 and DDA3937_RS21140 are separated by 120 nucleotides DDA3937_RS21140 and DDA3937_RS21145 are separated by 18 nucleotides
DDA3937_RS21130: DDA3937_RS21130 - glucokinase, at 4,810,338 to 4,811,306
_RS21130
DDA3937_RS21135: DDA3937_RS21135 - DUF3861 domain-containing protein, at 4,811,447 to 4,811,737
_RS21135
DDA3937_RS21140: DDA3937_RS21140 - MarR family transcriptional regulator, at 4,811,858 to 4,812,298
_RS21140
DDA3937_RS21145: DDA3937_RS21145 - GNAT family N-acetyltransferase, at 4,812,317 to 4,812,799
_RS21145
Position (kb) 4811
4812 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4810.528 kb on + strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.712 kb on + strand, within DDA3937_RS21130 at 4810.712 kb on + strand, within DDA3937_RS21130 at 4810.712 kb on + strand, within DDA3937_RS21130 at 4810.713 kb on - strand, within DDA3937_RS21130 at 4810.713 kb on - strand, within DDA3937_RS21130 at 4810.713 kb on - strand, within DDA3937_RS21130 at 4810.776 kb on + strand, within DDA3937_RS21130 at 4810.776 kb on + strand, within DDA3937_RS21130 at 4810.776 kb on + strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.782 kb on + strand, within DDA3937_RS21130 at 4810.906 kb on + strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.124 kb on - strand, within DDA3937_RS21130 at 4811.216 kb on + strand at 4811.216 kb on + strand at 4811.286 kb on + strand at 4811.286 kb on + strand at 4811.286 kb on + strand at 4811.287 kb on - strand at 4811.287 kb on - strand at 4811.287 kb on - strand at 4811.296 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.307 kb on - strand at 4811.312 kb on - strand at 4811.312 kb on - strand at 4811.341 kb on + strand at 4811.341 kb on + strand at 4811.341 kb on + strand at 4811.342 kb on - strand at 4811.342 kb on - strand at 4811.438 kb on + strand at 4811.438 kb on + strand at 4811.439 kb on - strand at 4811.439 kb on - strand at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.635 kb on + strand, within DDA3937_RS21135 at 4811.636 kb on - strand, within DDA3937_RS21135 at 4811.636 kb on - strand, within DDA3937_RS21135 at 4811.719 kb on + strand at 4811.719 kb on + strand at 4811.724 kb on + strand at 4811.730 kb on + strand at 4811.825 kb on - strand at 4811.825 kb on - strand at 4811.826 kb on + strand at 4811.827 kb on - strand at 4811.917 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand at 4812.259 kb on - strand at 4812.259 kb on - strand at 4812.297 kb on - strand at 4812.354 kb on + strand at 4812.355 kb on - strand at 4812.355 kb on - strand at 4812.369 kb on + strand, within DDA3937_RS21145 at 4812.369 kb on + strand, within DDA3937_RS21145 at 4812.369 kb on + strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.399 kb on + strand, within DDA3937_RS21145 at 4812.423 kb on + strand, within DDA3937_RS21145 at 4812.423 kb on + strand, within DDA3937_RS21145 at 4812.429 kb on - strand, within DDA3937_RS21145 at 4812.429 kb on - strand, within DDA3937_RS21145 at 4812.488 kb on + strand, within DDA3937_RS21145 at 4812.488 kb on + strand, within DDA3937_RS21145 at 4812.489 kb on - strand, within DDA3937_RS21145 at 4812.503 kb on + strand, within DDA3937_RS21145 at 4812.576 kb on + strand, within DDA3937_RS21145 at 4812.587 kb on - strand, within DDA3937_RS21145 at 4812.636 kb on + strand, within DDA3937_RS21145 at 4812.636 kb on + strand, within DDA3937_RS21145 at 4812.637 kb on - strand, within DDA3937_RS21145 at 4812.637 kb on - strand, within DDA3937_RS21145 at 4812.637 kb on - strand, within DDA3937_RS21145 at 4812.721 kb on - strand, within DDA3937_RS21145
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,810,528 + DDA3937_RS21130 0.20 -0.8 4,810,529 - DDA3937_RS21130 0.20 +0.8 4,810,529 - DDA3937_RS21130 0.20 +0.7 4,810,529 - DDA3937_RS21130 0.20 -0.5 4,810,529 - DDA3937_RS21130 0.20 +0.3 4,810,712 + DDA3937_RS21130 0.39 -0.7 4,810,712 + DDA3937_RS21130 0.39 +1.8 4,810,712 + DDA3937_RS21130 0.39 -0.1 4,810,713 - DDA3937_RS21130 0.39 -0.1 4,810,713 - DDA3937_RS21130 0.39 -0.6 4,810,713 - DDA3937_RS21130 0.39 -0.2 4,810,776 + DDA3937_RS21130 0.45 +0.3 4,810,776 + DDA3937_RS21130 0.45 -0.5 4,810,776 + DDA3937_RS21130 0.45 +0.6 4,810,777 - DDA3937_RS21130 0.45 +0.1 4,810,777 - DDA3937_RS21130 0.45 -0.2 4,810,777 - DDA3937_RS21130 0.45 +0.2 4,810,777 - DDA3937_RS21130 0.45 +0.9 4,810,782 + DDA3937_RS21130 0.46 -0.3 4,810,906 + DDA3937_RS21130 0.59 +0.5 4,810,907 - DDA3937_RS21130 0.59 +0.9 4,810,907 - DDA3937_RS21130 0.59 -0.2 4,810,907 - DDA3937_RS21130 0.59 -0.0 4,810,907 - DDA3937_RS21130 0.59 +0.9 4,811,123 + DDA3937_RS21130 0.81 -1.7 4,811,123 + DDA3937_RS21130 0.81 +0.9 4,811,123 + DDA3937_RS21130 0.81 -1.0 4,811,124 - DDA3937_RS21130 0.81 +0.1 4,811,216 + +0.2 4,811,216 + -1.7 4,811,286 + -1.1 4,811,286 + -0.0 4,811,286 + -1.0 4,811,287 - -0.3 4,811,287 - +0.8 4,811,287 - -0.7 4,811,296 + +0.2 4,811,306 + -0.6 4,811,306 + -1.7 4,811,306 + +0.5 4,811,306 + -0.5 4,811,307 - -1.5 4,811,312 - -1.2 4,811,312 - +0.7 4,811,341 + +0.1 4,811,341 + -2.0 4,811,341 + +0.6 4,811,342 - +0.6 4,811,342 - -0.2 4,811,438 + +0.8 4,811,438 + -0.7 4,811,439 - -0.4 4,811,439 - -0.8 4,811,479 + DDA3937_RS21135 0.11 +0.8 4,811,479 + DDA3937_RS21135 0.11 +0.7 4,811,479 + DDA3937_RS21135 0.11 -1.2 4,811,480 - DDA3937_RS21135 0.11 -1.1 4,811,480 - DDA3937_RS21135 0.11 +1.3 4,811,480 - DDA3937_RS21135 0.11 +0.3 4,811,480 - DDA3937_RS21135 0.11 +0.3 4,811,635 + DDA3937_RS21135 0.65 +0.4 4,811,636 - DDA3937_RS21135 0.65 -1.2 4,811,636 - DDA3937_RS21135 0.65 +1.8 4,811,719 + -0.5 4,811,719 + +0.2 4,811,724 + +0.6 4,811,730 + -0.8 4,811,825 - +0.8 4,811,825 - +0.1 4,811,826 + -0.4 4,811,827 - -0.2 4,811,917 + DDA3937_RS21140 0.13 -0.7 4,812,035 + DDA3937_RS21140 0.40 +0.5 4,812,035 + DDA3937_RS21140 0.40 -0.2 4,812,035 + DDA3937_RS21140 0.40 +0.0 4,812,035 + DDA3937_RS21140 0.40 -0.7 4,812,036 - DDA3937_RS21140 0.40 +1.8 4,812,036 - DDA3937_RS21140 0.40 -0.4 4,812,036 - DDA3937_RS21140 0.40 +0.1 4,812,036 - DDA3937_RS21140 0.40 +0.2 4,812,036 - DDA3937_RS21140 0.40 +0.3 4,812,036 - -1.5 4,812,259 - +0.3 4,812,259 - -1.1 4,812,297 - +1.8 4,812,354 + +0.5 4,812,355 - +0.3 4,812,355 - -0.5 4,812,369 + DDA3937_RS21145 0.11 -3.8 4,812,369 + DDA3937_RS21145 0.11 +1.4 4,812,369 + DDA3937_RS21145 0.11 +0.1 4,812,370 - DDA3937_RS21145 0.11 -1.4 4,812,370 - DDA3937_RS21145 0.11 -0.0 4,812,370 - DDA3937_RS21145 0.11 -0.2 4,812,370 - DDA3937_RS21145 0.11 +0.9 4,812,370 - DDA3937_RS21145 0.11 +0.2 4,812,399 + DDA3937_RS21145 0.17 -0.5 4,812,423 + DDA3937_RS21145 0.22 +0.5 4,812,423 + DDA3937_RS21145 0.22 -0.4 4,812,429 - DDA3937_RS21145 0.23 +0.3 4,812,429 - DDA3937_RS21145 0.23 -0.2 4,812,488 + DDA3937_RS21145 0.35 -0.5 4,812,488 + DDA3937_RS21145 0.35 +0.1 4,812,489 - DDA3937_RS21145 0.36 -1.2 4,812,503 + DDA3937_RS21145 0.39 +0.8 4,812,576 + DDA3937_RS21145 0.54 -0.0 4,812,587 - DDA3937_RS21145 0.56 +0.2 4,812,636 + DDA3937_RS21145 0.66 -0.2 4,812,636 + DDA3937_RS21145 0.66 +0.0 4,812,637 - DDA3937_RS21145 0.66 +0.7 4,812,637 - DDA3937_RS21145 0.66 +0.1 4,812,637 - DDA3937_RS21145 0.66 -0.3 4,812,721 - DDA3937_RS21145 0.84 +0.8
Or see this region's nucleotide sequence