Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20965 and DDA3937_RS20970 are separated by 120 nucleotides DDA3937_RS20970 and DDA3937_RS20975 are separated by 159 nucleotides DDA3937_RS20975 and DDA3937_RS20980 are separated by 75 nucleotides
DDA3937_RS20965: DDA3937_RS20965 - methyl-accepting chemotaxis protein, at 4,767,374 to 4,769,260
_RS20965
DDA3937_RS20970: DDA3937_RS20970 - mannitol operon repressor, at 4,769,381 to 4,769,911
_RS20970
DDA3937_RS20975: DDA3937_RS20975 - mannitol-1-phosphate 5-dehydrogenase, at 4,770,071 to 4,771,219
_RS20975
DDA3937_RS20980: DDA3937_RS20980 - PTS mannitol transporter subunit IICBA, at 4,771,295 to 4,773,202
_RS20980
Position (kb) 4770
4771
4772 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.250 kb on - strand at 4769.250 kb on - strand at 4769.252 kb on - strand at 4769.252 kb on - strand at 4769.364 kb on + strand at 4769.364 kb on + strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.413 kb on + strand at 4769.414 kb on - strand at 4769.647 kb on + strand at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.766 kb on + strand, within DDA3937_RS20970 at 4769.767 kb on - strand, within DDA3937_RS20970 at 4769.820 kb on - strand, within DDA3937_RS20970 at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.925 kb on - strand at 4769.930 kb on - strand at 4770.012 kb on - strand at 4770.072 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.323 kb on - strand, within DDA3937_RS20975 at 4770.402 kb on + strand, within DDA3937_RS20975 at 4770.403 kb on - strand, within DDA3937_RS20975 at 4770.403 kb on - strand, within DDA3937_RS20975 at 4770.433 kb on - strand, within DDA3937_RS20975 at 4770.523 kb on + strand, within DDA3937_RS20975 at 4770.524 kb on - strand, within DDA3937_RS20975 at 4770.524 kb on - strand, within DDA3937_RS20975 at 4770.546 kb on + strand, within DDA3937_RS20975 at 4770.546 kb on + strand, within DDA3937_RS20975 at 4770.547 kb on - strand, within DDA3937_RS20975 at 4770.572 kb on - strand, within DDA3937_RS20975 at 4770.664 kb on + strand, within DDA3937_RS20975 at 4770.743 kb on - strand, within DDA3937_RS20975 at 4770.743 kb on - strand at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.796 kb on + strand, within DDA3937_RS20975 at 4770.797 kb on - strand, within DDA3937_RS20975 at 4770.797 kb on - strand, within DDA3937_RS20975 at 4770.829 kb on + strand at 4770.829 kb on + strand, within DDA3937_RS20975 at 4770.830 kb on - strand, within DDA3937_RS20975 at 4770.868 kb on + strand, within DDA3937_RS20975 at 4770.869 kb on - strand, within DDA3937_RS20975 at 4770.871 kb on + strand, within DDA3937_RS20975 at 4770.871 kb on + strand at 4770.871 kb on + strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4771.084 kb on - strand, within DDA3937_RS20975 at 4771.084 kb on - strand, within DDA3937_RS20975 at 4771.088 kb on - strand, within DDA3937_RS20975 at 4771.088 kb on - strand, within DDA3937_RS20975 at 4771.208 kb on + strand at 4771.209 kb on - strand at 4771.227 kb on - strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.233 kb on - strand at 4771.233 kb on - strand at 4771.233 kb on - strand at 4771.236 kb on - strand at 4771.236 kb on - strand at 4771.236 kb on - strand at 4771.245 kb on + strand at 4771.245 kb on + strand at 4771.290 kb on - strand at 4771.348 kb on + strand at 4771.351 kb on + strand at 4771.364 kb on + strand at 4771.364 kb on + strand at 4771.364 kb on + strand at 4771.364 kb on + strand at 4771.365 kb on - strand at 4771.365 kb on - strand at 4771.365 kb on - strand at 4771.508 kb on + strand, within DDA3937_RS20980 at 4771.509 kb on - strand, within DDA3937_RS20980 at 4771.581 kb on + strand, within DDA3937_RS20980 at 4771.582 kb on - strand, within DDA3937_RS20980 at 4771.582 kb on - strand, within DDA3937_RS20980 at 4771.623 kb on + strand, within DDA3937_RS20980 at 4771.623 kb on + strand, within DDA3937_RS20980 at 4771.624 kb on - strand, within DDA3937_RS20980 at 4771.624 kb on - strand, within DDA3937_RS20980 at 4771.624 kb on - strand, within DDA3937_RS20980 at 4771.638 kb on + strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.649 kb on + strand, within DDA3937_RS20980 at 4771.649 kb on + strand, within DDA3937_RS20980 at 4771.650 kb on - strand, within DDA3937_RS20980 at 4771.834 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,769,249 + +0.3 4,769,249 + -0.3 4,769,249 + +0.1 4,769,249 + -0.5 4,769,249 + +0.3 4,769,249 + +0.1 4,769,250 - +0.1 4,769,250 - -1.0 4,769,252 - +1.1 4,769,252 - -0.2 4,769,364 + -2.5 4,769,364 + -0.3 4,769,365 - -0.2 4,769,365 - -0.7 4,769,365 - -0.6 4,769,413 + -0.0 4,769,414 - -2.1 4,769,647 + +0.0 4,769,685 + DDA3937_RS20970 0.57 -1.0 4,769,685 + DDA3937_RS20970 0.57 -0.2 4,769,686 - DDA3937_RS20970 0.57 +0.6 4,769,686 - DDA3937_RS20970 0.57 -0.1 4,769,686 - DDA3937_RS20970 0.57 -0.7 4,769,754 + DDA3937_RS20970 0.70 -0.8 4,769,754 + DDA3937_RS20970 0.70 -1.7 4,769,766 + DDA3937_RS20970 0.73 -0.7 4,769,767 - DDA3937_RS20970 0.73 +0.3 4,769,820 - DDA3937_RS20970 0.83 -0.3 4,769,924 + -1.7 4,769,924 + -0.4 4,769,924 + -0.2 4,769,924 + +1.3 4,769,925 - +0.3 4,769,930 - -0.4 4,770,012 - +0.6 4,770,072 + -0.1 4,770,087 + -1.6 4,770,087 + +0.3 4,770,087 + -0.4 4,770,087 + +0.3 4,770,088 - -0.2 4,770,088 - -0.5 4,770,088 - -0.4 4,770,088 - -2.1 4,770,088 - -1.5 4,770,088 - +0.3 4,770,323 - DDA3937_RS20975 0.22 +1.6 4,770,402 + DDA3937_RS20975 0.29 -1.2 4,770,403 - DDA3937_RS20975 0.29 -1.2 4,770,403 - DDA3937_RS20975 0.29 -1.0 4,770,433 - DDA3937_RS20975 0.32 -0.7 4,770,523 + DDA3937_RS20975 0.39 +1.8 4,770,524 - DDA3937_RS20975 0.39 -0.9 4,770,524 - DDA3937_RS20975 0.39 -0.4 4,770,546 + DDA3937_RS20975 0.41 +0.6 4,770,546 + DDA3937_RS20975 0.41 -0.2 4,770,547 - DDA3937_RS20975 0.41 +0.1 4,770,572 - DDA3937_RS20975 0.44 -1.1 4,770,664 + DDA3937_RS20975 0.52 -0.7 4,770,743 - DDA3937_RS20975 0.58 -0.9 4,770,743 - -0.7 4,770,794 + DDA3937_RS20975 0.63 -1.8 4,770,794 + DDA3937_RS20975 0.63 -1.2 4,770,794 + DDA3937_RS20975 0.63 -1.0 4,770,794 + DDA3937_RS20975 0.63 -1.2 4,770,794 + DDA3937_RS20975 0.63 -0.7 4,770,795 - DDA3937_RS20975 0.63 +0.3 4,770,795 - DDA3937_RS20975 0.63 -1.0 4,770,795 - DDA3937_RS20975 0.63 +0.0 4,770,795 - DDA3937_RS20975 0.63 +0.7 4,770,795 - DDA3937_RS20975 0.63 +0.6 4,770,795 - DDA3937_RS20975 0.63 -2.7 4,770,795 - DDA3937_RS20975 0.63 -1.2 4,770,796 + DDA3937_RS20975 0.63 -0.1 4,770,797 - DDA3937_RS20975 0.63 -0.5 4,770,797 - DDA3937_RS20975 0.63 -0.6 4,770,829 + -1.0 4,770,829 + DDA3937_RS20975 0.66 +0.5 4,770,830 - DDA3937_RS20975 0.66 -1.7 4,770,868 + DDA3937_RS20975 0.69 -0.2 4,770,869 - DDA3937_RS20975 0.69 -1.0 4,770,871 + DDA3937_RS20975 0.70 -1.2 4,770,871 + -0.2 4,770,871 + DDA3937_RS20975 0.70 -1.2 4,770,872 - DDA3937_RS20975 0.70 -1.2 4,770,872 - DDA3937_RS20975 0.70 -0.2 4,770,872 - DDA3937_RS20975 0.70 -0.2 4,770,872 - DDA3937_RS20975 0.70 +0.2 4,771,084 - DDA3937_RS20975 0.88 -1.2 4,771,084 - DDA3937_RS20975 0.88 -1.5 4,771,088 - DDA3937_RS20975 0.89 -1.3 4,771,088 - DDA3937_RS20975 0.89 -0.9 4,771,208 + -1.5 4,771,209 - -0.2 4,771,227 - -0.3 4,771,232 + -0.5 4,771,232 + +0.2 4,771,232 + -0.8 4,771,232 + -1.2 4,771,232 + +0.0 4,771,233 - -0.2 4,771,233 - +0.2 4,771,233 - +1.1 4,771,236 - +0.4 4,771,236 - +0.2 4,771,236 - -1.5 4,771,245 + -0.0 4,771,245 + +0.2 4,771,290 - -0.4 4,771,348 + -2.0 4,771,351 + +1.3 4,771,364 + -0.6 4,771,364 + +0.3 4,771,364 + +0.5 4,771,364 + -0.4 4,771,365 - +0.3 4,771,365 - +0.2 4,771,365 - -1.5 4,771,508 + DDA3937_RS20980 0.11 +0.7 4,771,509 - DDA3937_RS20980 0.11 -0.1 4,771,581 + DDA3937_RS20980 0.15 +0.6 4,771,582 - DDA3937_RS20980 0.15 -0.5 4,771,582 - DDA3937_RS20980 0.15 +0.2 4,771,623 + DDA3937_RS20980 0.17 -0.2 4,771,623 + DDA3937_RS20980 0.17 -0.5 4,771,624 - DDA3937_RS20980 0.17 -0.1 4,771,624 - DDA3937_RS20980 0.17 -1.2 4,771,624 - DDA3937_RS20980 0.17 +0.0 4,771,638 + DDA3937_RS20980 0.18 -2.7 4,771,639 - DDA3937_RS20980 0.18 -1.2 4,771,639 - DDA3937_RS20980 0.18 +0.0 4,771,639 - DDA3937_RS20980 0.18 +0.1 4,771,639 - DDA3937_RS20980 0.18 +0.0 4,771,639 - DDA3937_RS20980 0.18 +0.6 4,771,649 + DDA3937_RS20980 0.19 +0.1 4,771,649 + DDA3937_RS20980 0.19 -1.7 4,771,650 - DDA3937_RS20980 0.19 +0.7 4,771,834 + DDA3937_RS20980 0.28 +0.5 4,771,836 + DDA3937_RS20980 0.28 -0.7 4,771,836 + DDA3937_RS20980 0.28 -0.5 4,771,836 + DDA3937_RS20980 0.28 -1.0 4,771,836 + DDA3937_RS20980 0.28 -0.0 4,771,836 + DDA3937_RS20980 0.28 -1.0 4,771,836 + DDA3937_RS20980 0.28 -0.0 4,771,836 + DDA3937_RS20980 0.28 -0.1 4,771,837 - DDA3937_RS20980 0.28 +0.4 4,771,837 - DDA3937_RS20980 0.28 +0.5 4,771,837 - DDA3937_RS20980 0.28 +1.5 4,771,837 - DDA3937_RS20980 0.28 +0.1 4,771,837 - DDA3937_RS20980 0.28 +1.2 4,771,837 - DDA3937_RS20980 0.28 +1.9 4,771,837 - DDA3937_RS20980 0.28 -1.0 4,771,837 - DDA3937_RS20980 0.28 -0.3
Or see this region's nucleotide sequence