Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20690

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20680 and DDA3937_RS20685 are separated by 318 nucleotidesDDA3937_RS20685 and DDA3937_RS20690 are separated by 72 nucleotidesDDA3937_RS20690 and DDA3937_RS20695 are separated by 48 nucleotidesDDA3937_RS20695 and DDA3937_RS20700 are separated by 31 nucleotides DDA3937_RS20680: DDA3937_RS20680 - hypothetical protein, at 4,702,125 to 4,702,868 _RS20680 DDA3937_RS20685: DDA3937_RS20685 - hypothetical protein, at 4,703,187 to 4,703,558 _RS20685 DDA3937_RS20690: DDA3937_RS20690 - hypothetical protein, at 4,703,631 to 4,704,560 _RS20690 DDA3937_RS20695: DDA3937_RS20695 - hypothetical protein, at 4,704,609 to 4,705,334 _RS20695 DDA3937_RS20700: DDA3937_RS20700 - hypothetical protein, at 4,705,366 to 4,705,854 _RS20700 Position (kb) 4703 4704 4705Strain fitness (log2 ratio) -1 0 1 2 3at 4702.732 kb on + strand, within DDA3937_RS20680at 4702.796 kb on + strandat 4702.797 kb on - strandat 4702.932 kb on - strandat 4703.002 kb on + strandat 4703.033 kb on - strandat 4703.066 kb on + strandat 4703.068 kb on + strandat 4703.224 kb on + strandat 4703.535 kb on + strandat 4703.546 kb on + strandat 4703.653 kb on + strandat 4703.654 kb on - strandat 4703.838 kb on - strand, within DDA3937_RS20690at 4703.866 kb on - strand, within DDA3937_RS20690at 4703.874 kb on + strand, within DDA3937_RS20690at 4703.923 kb on - strand, within DDA3937_RS20690at 4704.004 kb on - strand, within DDA3937_RS20690at 4704.005 kb on + strand, within DDA3937_RS20690at 4704.314 kb on - strand, within DDA3937_RS20690at 4704.531 kb on - strandat 4704.534 kb on - strandat 4704.590 kb on + strandat 4704.591 kb on - strandat 4704.646 kb on + strandat 4704.972 kb on - strand, within DDA3937_RS20695at 4705.035 kb on - strand, within DDA3937_RS20695at 4705.247 kb on - strand, within DDA3937_RS20695at 4705.543 kb on + strand, within DDA3937_RS20700

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,702,732 + DDA3937_RS20680 0.82 +0.6
4,702,796 + +2.9
4,702,797 - -0.8
4,702,932 - +0.7
4,703,002 + -0.0
4,703,033 - +1.0
4,703,066 + +1.1
4,703,068 + -0.7
4,703,224 + +0.7
4,703,535 + -0.4
4,703,546 + -0.4
4,703,653 + +1.3
4,703,654 - -0.5
4,703,838 - DDA3937_RS20690 0.22 -0.8
4,703,866 - DDA3937_RS20690 0.25 -0.5
4,703,874 + DDA3937_RS20690 0.26 -0.3
4,703,923 - DDA3937_RS20690 0.31 -1.1
4,704,004 - DDA3937_RS20690 0.40 -1.1
4,704,005 + DDA3937_RS20690 0.40 -0.2
4,704,314 - DDA3937_RS20690 0.73 -0.5
4,704,531 - -0.4
4,704,534 - -0.5
4,704,590 + +0.5
4,704,591 - +0.7
4,704,646 + +1.9
4,704,972 - DDA3937_RS20695 0.50 -0.3
4,705,035 - DDA3937_RS20695 0.59 -0.8
4,705,247 - DDA3937_RS20695 0.88 -0.7
4,705,543 + DDA3937_RS20700 0.36 -1.1

Or see this region's nucleotide sequence