Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20255 and DDA3937_RS20260 are separated by 52 nucleotides DDA3937_RS20260 and DDA3937_RS20265 are separated by 25 nucleotides DDA3937_RS20265 and DDA3937_RS20270 overlap by 11 nucleotides DDA3937_RS20270 and DDA3937_RS20275 are separated by 129 nucleotides
DDA3937_RS20255: DDA3937_RS20255 - acetyl-CoA C-acyltransferase FadA, at 4,615,196 to 4,616,359
_RS20255
DDA3937_RS20260: DDA3937_RS20260 - membrane protein, at 4,616,412 to 4,616,840
_RS20260
DDA3937_RS20265: DDA3937_RS20265 - YeeE/YedE family protein, at 4,616,866 to 4,617,294
_RS20265
DDA3937_RS20270: DDA3937_RS20270 - helix-turn-helix transcriptional regulator, at 4,617,284 to 4,617,631
_RS20270
DDA3937_RS20275: DDA3937_RS20275 - FAD-dependent oxidoreductase, at 4,617,761 to 4,619,452
_RS20275
Position (kb)
4616
4617
4618 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4615.938 kb on + strand, within DDA3937_RS20255 at 4616.040 kb on - strand, within DDA3937_RS20255 at 4616.116 kb on - strand, within DDA3937_RS20255 at 4616.116 kb on - strand, within DDA3937_RS20255 at 4616.185 kb on + strand, within DDA3937_RS20255 at 4616.185 kb on + strand, within DDA3937_RS20255 at 4616.248 kb on + strand at 4616.263 kb on + strand at 4616.314 kb on + strand at 4616.355 kb on + strand at 4616.355 kb on + strand at 4616.358 kb on - strand at 4616.358 kb on - strand at 4616.452 kb on + strand at 4616.452 kb on + strand at 4616.452 kb on + strand at 4616.452 kb on + strand at 4616.452 kb on + strand at 4616.452 kb on + strand at 4616.453 kb on - strand at 4616.453 kb on - strand at 4616.453 kb on - strand at 4616.453 kb on - strand at 4616.453 kb on - strand at 4616.453 kb on - strand at 4616.474 kb on + strand, within DDA3937_RS20260 at 4616.474 kb on + strand, within DDA3937_RS20260 at 4616.474 kb on + strand, within DDA3937_RS20260 at 4616.475 kb on - strand, within DDA3937_RS20260 at 4616.475 kb on - strand, within DDA3937_RS20260 at 4616.475 kb on - strand, within DDA3937_RS20260 at 4616.475 kb on - strand, within DDA3937_RS20260 at 4616.543 kb on + strand, within DDA3937_RS20260 at 4616.544 kb on - strand, within DDA3937_RS20260 at 4617.089 kb on + strand, within DDA3937_RS20265 at 4617.270 kb on + strand at 4617.283 kb on - strand at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.327 kb on + strand, within DDA3937_RS20270 at 4617.328 kb on - strand, within DDA3937_RS20270 at 4617.328 kb on - strand, within DDA3937_RS20270 at 4617.328 kb on - strand, within DDA3937_RS20270 at 4617.328 kb on - strand, within DDA3937_RS20270 at 4617.328 kb on - strand, within DDA3937_RS20270 at 4617.328 kb on - strand, within DDA3937_RS20270 at 4617.336 kb on + strand, within DDA3937_RS20270 at 4617.343 kb on + strand, within DDA3937_RS20270 at 4617.377 kb on - strand, within DDA3937_RS20270 at 4617.632 kb on - strand at 4617.632 kb on - strand at 4617.716 kb on + strand at 4617.760 kb on + strand at 4617.761 kb on - strand at 4617.761 kb on - strand at 4617.773 kb on - strand at 4617.869 kb on + strand at 4617.869 kb on + strand at 4617.870 kb on - strand at 4617.870 kb on - strand at 4617.870 kb on - strand at 4617.870 kb on - strand at 4617.899 kb on + strand at 4617.900 kb on - strand at 4617.904 kb on + strand at 4617.973 kb on + strand, within DDA3937_RS20275 at 4617.974 kb on - strand, within DDA3937_RS20275 at 4617.976 kb on + strand, within DDA3937_RS20275 at 4617.977 kb on - strand, within DDA3937_RS20275 at 4617.977 kb on - strand, within DDA3937_RS20275 at 4617.977 kb on - strand, within DDA3937_RS20275 at 4617.977 kb on - strand, within DDA3937_RS20275 at 4617.977 kb on - strand, within DDA3937_RS20275 at 4618.065 kb on - strand, within DDA3937_RS20275 at 4618.077 kb on - strand, within DDA3937_RS20275 at 4618.154 kb on - strand, within DDA3937_RS20275
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,615,938 + DDA3937_RS20255 0.64 +0.7 4,616,040 - DDA3937_RS20255 0.73 -0.7 4,616,116 - DDA3937_RS20255 0.79 +0.1 4,616,116 - DDA3937_RS20255 0.79 +0.9 4,616,185 + DDA3937_RS20255 0.85 -0.3 4,616,185 + DDA3937_RS20255 0.85 +0.1 4,616,248 + +1.8 4,616,263 + -3.2 4,616,314 + -0.3 4,616,355 + -0.1 4,616,355 + -0.4 4,616,358 - +2.3 4,616,358 - -0.4 4,616,452 + -0.3 4,616,452 + -1.7 4,616,452 + +0.6 4,616,452 + +0.1 4,616,452 + -0.3 4,616,452 + +1.3 4,616,453 - -0.5 4,616,453 - -0.5 4,616,453 - +0.6 4,616,453 - -0.8 4,616,453 - -0.1 4,616,453 - -0.0 4,616,474 + DDA3937_RS20260 0.14 -0.7 4,616,474 + DDA3937_RS20260 0.14 +0.3 4,616,474 + DDA3937_RS20260 0.14 -0.3 4,616,475 - DDA3937_RS20260 0.15 -0.0 4,616,475 - DDA3937_RS20260 0.15 +0.1 4,616,475 - DDA3937_RS20260 0.15 +0.1 4,616,475 - DDA3937_RS20260 0.15 +0.9 4,616,543 + DDA3937_RS20260 0.31 -0.2 4,616,544 - DDA3937_RS20260 0.31 +0.9 4,617,089 + DDA3937_RS20265 0.52 -1.0 4,617,270 + +0.4 4,617,283 - +0.2 4,617,327 + DDA3937_RS20270 0.12 -2.2 4,617,327 + DDA3937_RS20270 0.12 +0.3 4,617,327 + DDA3937_RS20270 0.12 -0.7 4,617,327 + DDA3937_RS20270 0.12 -0.3 4,617,327 + DDA3937_RS20270 0.12 +0.3 4,617,327 + DDA3937_RS20270 0.12 +0.6 4,617,327 + DDA3937_RS20270 0.12 -0.3 4,617,328 - DDA3937_RS20270 0.13 -0.4 4,617,328 - DDA3937_RS20270 0.13 +0.3 4,617,328 - DDA3937_RS20270 0.13 +1.2 4,617,328 - DDA3937_RS20270 0.13 -0.3 4,617,328 - DDA3937_RS20270 0.13 -0.6 4,617,328 - DDA3937_RS20270 0.13 -0.7 4,617,336 + DDA3937_RS20270 0.15 -0.1 4,617,343 + DDA3937_RS20270 0.17 +0.7 4,617,377 - DDA3937_RS20270 0.27 +0.3 4,617,632 - +0.5 4,617,632 - -0.3 4,617,716 + +2.7 4,617,760 + -0.3 4,617,761 - -0.1 4,617,761 - -0.0 4,617,773 - -1.4 4,617,869 + -0.3 4,617,869 + -1.0 4,617,870 - +0.3 4,617,870 - +0.0 4,617,870 - +0.8 4,617,870 - -0.7 4,617,899 + +0.9 4,617,900 - -0.3 4,617,904 + -1.4 4,617,973 + DDA3937_RS20275 0.13 -2.3 4,617,974 - DDA3937_RS20275 0.13 +0.8 4,617,976 + DDA3937_RS20275 0.13 -0.4 4,617,977 - DDA3937_RS20275 0.13 +0.3 4,617,977 - DDA3937_RS20275 0.13 -0.9 4,617,977 - DDA3937_RS20275 0.13 -0.2 4,617,977 - DDA3937_RS20275 0.13 +0.8 4,617,977 - DDA3937_RS20275 0.13 -0.6 4,618,065 - DDA3937_RS20275 0.18 -0.1 4,618,077 - DDA3937_RS20275 0.19 +0.3 4,618,154 - DDA3937_RS20275 0.23 +0.8
Or see this region's nucleotide sequence