Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20045

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,560,461	+		DDA3937_RS20040	0.18	-0.1
4,560,598	+		DDA3937_RS20040	0.30	-2.7
4,560,598	+		DDA3937_RS20040	0.30	-0.1
4,560,598	+		DDA3937_RS20040	0.30	+0.2
4,560,598	+		DDA3937_RS20040	0.30	+0.9
4,560,599	-		DDA3937_RS20040	0.30	-0.3
4,560,599	-		DDA3937_RS20040	0.30	+0.4
4,560,599	-		DDA3937_RS20040	0.30	+0.3
4,560,665	-		DDA3937_RS20040	0.36	-0.1
4,560,665	-		DDA3937_RS20040	0.36	-0.3
4,560,665	-		DDA3937_RS20040	0.36	-1.4
4,560,692	-		DDA3937_RS20040	0.38	-1.3
4,560,716	+		DDA3937_RS20040	0.40	+0.1
4,560,716	+		DDA3937_RS20040	0.40	+0.9
4,560,716	+		DDA3937_RS20040	0.40	+0.2
4,560,717	-		DDA3937_RS20040	0.41	-1.5
4,560,717	-		DDA3937_RS20040	0.41	-1.5
4,560,717	-		DDA3937_RS20040	0.41	+0.4
4,560,718	+		DDA3937_RS20040	0.41	-0.3
4,560,718	+		DDA3937_RS20040	0.41	+1.3
4,560,718	+		DDA3937_RS20040	0.41	-0.3
4,560,718	+		DDA3937_RS20040	0.41	-2.0
4,560,718	+		DDA3937_RS20040	0.41	-0.5
4,560,719	-		DDA3937_RS20040	0.41	-1.0
4,560,719	-		DDA3937_RS20040	0.41	-0.2
4,560,719	-		DDA3937_RS20040	0.41	-1.5
4,560,719	-		DDA3937_RS20040	0.41	+0.8
4,560,719	-		DDA3937_RS20040	0.41	-0.3
4,560,719	-		DDA3937_RS20040	0.41	-1.7
4,560,719	-		DDA3937_RS20040	0.41	+1.5
4,560,719	-		DDA3937_RS20040	0.41	+0.3
4,560,719	-		DDA3937_RS20040	0.41	-0.1
4,560,719	-		DDA3937_RS20040	0.41	-1.1
4,560,722	+		DDA3937_RS20040	0.41	-0.6
4,560,723	-		DDA3937_RS20040	0.41	-1.7
4,560,841	+		DDA3937_RS20040	0.52	+0.1
4,560,841	+		DDA3937_RS20040	0.52	-0.9
4,560,841	+		DDA3937_RS20040	0.52	-0.6
4,560,908	-		DDA3937_RS20040	0.57	-0.2
4,561,006	+		DDA3937_RS20040	0.66	+0.6
4,561,007	-		DDA3937_RS20040	0.66	-0.9
4,561,007	-		DDA3937_RS20040	0.66	-1.2
4,561,153	+		DDA3937_RS20040	0.79	-0.1
4,561,153	+		DDA3937_RS20040	0.79	-1.1
4,561,154	-		DDA3937_RS20040	0.79	-1.0
4,561,154	-		DDA3937_RS20040	0.79	+0.3
4,561,154	-		DDA3937_RS20040	0.79	-0.2
4,561,242	+		DDA3937_RS20040	0.87	+0.4
4,561,242	+		DDA3937_RS20040	0.87	-0.8
4,561,242	+		DDA3937_RS20040	0.87	-0.2
4,561,243	-		DDA3937_RS20040	0.87	-0.0
4,561,243	-		DDA3937_RS20040	0.87	-0.5
4,561,262	-		DDA3937_RS20040	0.89	+0.8
4,561,262	-		DDA3937_RS20040	0.89	-0.7
4,561,340	+				+0.7
4,561,340	+				-0.9
4,561,340	+				-0.7
4,561,340	+				-0.7
4,561,341	-				+0.2
4,561,341	-				+0.4
4,561,341	-				-0.1
4,561,341	-				+0.8
4,561,341	-				-0.9
4,561,341	-				-1.5
4,561,341	-				-0.7
4,561,341	-				-0.0
4,561,341	-				+0.5
4,561,342	+				-0.0
4,561,342	+				-1.7
4,561,342	+				+1.7
4,561,343	-				-1.0
4,561,343	-				+0.1
4,561,343	-				-0.0
4,561,343	-				-0.2
4,561,343	-				+0.2
4,561,343	-				-0.2
4,561,343	-				+0.0
4,561,431	-				+0.4
4,561,444	+				-0.2
4,561,454	-				-0.6
4,561,490	-				-0.2
4,561,490	-				+1.7
4,561,735	+		DDA3937_RS20045	0.42	-0.1
4,561,735	+		DDA3937_RS20045	0.42	+0.6
4,561,735	+		DDA3937_RS20045	0.42	+0.3
4,561,735	+		DDA3937_RS20045	0.42	-0.2
4,561,736	-		DDA3937_RS20045	0.42	+0.2
4,561,736	-		DDA3937_RS20045	0.42	-0.3
4,561,736	-		DDA3937_RS20045	0.42	-1.6
4,561,736	-		DDA3937_RS20045	0.42	-1.4
4,561,736	-		DDA3937_RS20045	0.42	-0.1
4,561,763	-		DDA3937_RS20045	0.45	-1.2
4,561,854	-		DDA3937_RS20045	0.58	-0.7
4,561,919	+		DDA3937_RS20045	0.67	-0.4
4,562,014	-		DDA3937_RS20045	0.80	-1.1
4,562,020	+		DDA3937_RS20045	0.81	-0.4
4,562,020	+		DDA3937_RS20045	0.81	-0.6
4,562,021	-		DDA3937_RS20045	0.81	+0.3
4,562,084	+				+0.9
4,562,085	-				+1.3
4,562,153	+				+0.0
4,562,153	+				+0.7
4,562,153	+				-0.3
4,562,153	+				-0.5
4,562,153	+				-0.1
4,562,153	+				+0.6
4,562,153	+				+0.4
4,562,153	+				-0.3
4,562,154	-				+0.3
4,562,154	-				+0.3
4,562,154	-				-1.0
4,562,154	-				+0.3
4,562,154	-				-0.3
4,562,154	-				-0.9
4,562,154	-				+0.2
4,562,154	-				+0.1
4,562,154	-				-0.0
4,562,154	-				-0.7
4,562,154	-				+0.3
4,562,154	-				-0.6
4,562,154	-				-1.3
4,562,154	-				-0.2
4,562,154	-				+0.2
4,562,326	+				-0.9
4,562,327	-				+1.1
4,562,518	+		DDA3937_RS20050	0.25	+0.3
4,562,645	-		DDA3937_RS20050	0.35	+0.0
4,562,645	-		DDA3937_RS20050	0.35	-0.5
4,562,697	-		DDA3937_RS20050	0.39	-1.0
4,562,971	+		DDA3937_RS20050	0.61	+0.0
4,562,972	-		DDA3937_RS20050	0.61	-1.0
4,563,000	+		DDA3937_RS20050	0.63	+1.0