Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18605

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,251,579	+		DDA3937_RS18600	0.38	-1.4
4,251,775	-		DDA3937_RS18600	0.54	-0.9
4,252,076	-		DDA3937_RS18600	0.78	-0.5
4,252,217	-				+0.1
4,252,223	+		DDA3937_RS18600	0.90	+1.1
4,252,377	-				-1.0
4,252,377	-				-0.2
4,252,377	-				-0.1
4,252,381	-				-0.7
4,252,381	-				-0.5
4,252,410	-				+0.1
4,252,438	-				-1.0
4,252,438	-				-0.7
4,252,438	-				-2.3
4,252,438	-				+0.1
4,252,438	-				-0.2
4,252,438	-				-0.6
4,252,438	-				-0.8
4,252,438	-				-0.8
4,252,438	-				+0.9
4,252,439	+				-1.3
4,252,440	-				+0.1
4,252,440	-				+0.1
4,252,440	-				-0.9
4,252,440	-				+1.5
4,252,510	+				+1.1
4,252,511	-				-0.1
4,252,560	-		DDA3937_RS18605	0.10	-1.2
4,252,608	-		DDA3937_RS18605	0.14	+2.6
4,252,608	-		DDA3937_RS18605	0.14	+1.0
4,252,652	-		DDA3937_RS18605	0.17	+0.4
4,252,652	-		DDA3937_RS18605	0.17	-0.4
4,252,655	-		DDA3937_RS18605	0.18	-1.9
4,252,773	+		DDA3937_RS18605	0.27	-1.4
4,252,774	-		DDA3937_RS18605	0.27	+1.3
4,252,808	-		DDA3937_RS18605	0.30	-0.9
4,252,828	-		DDA3937_RS18605	0.31	+0.8
4,252,828	-		DDA3937_RS18605	0.31	-0.3
4,253,043	-		DDA3937_RS18605	0.48	-0.4
4,253,043	-		DDA3937_RS18605	0.48	-1.2
4,253,062	-		DDA3937_RS18605	0.49	+0.4
4,253,062	-		DDA3937_RS18605	0.49	+1.8
4,253,544	-		DDA3937_RS18605	0.87	-0.8
4,253,544	-		DDA3937_RS18605	0.87	-0.4
4,253,544	-		DDA3937_RS18605	0.87	+1.6
4,253,593	+				-0.6
4,253,641	-				-0.6
4,253,661	-				-1.3
4,253,665	-				-0.4
4,253,665	-				-0.7
4,253,671	+				+0.1
4,253,671	+				-0.9
4,253,671	+				+0.1
4,253,672	-				+1.1
4,253,672	-				+0.1
4,253,672	-				-0.4
4,253,672	-				-1.0
4,253,672	-				+0.1
4,253,672	-				-0.1
4,253,672	-				-0.3
4,253,672	-				+0.7
4,253,672	-				-1.3
4,253,672	-				+0.8
4,253,672	-				+0.9
4,253,672	-				-0.5
4,253,672	-				-0.1
4,253,672	-				+0.1
4,253,672	-				-0.4
4,253,672	-				-0.3
4,253,675	-				-0.3
4,253,675	-				-1.8
4,253,675	-				-1.9
4,253,675	-				+0.1
4,253,675	-				+1.5
4,253,675	-				+0.9
4,253,697	-				+1.1
4,253,782	-				+0.1
4,253,790	-				-1.1
4,253,860	+				-0.9
4,253,860	+		DDA3937_RS18610	0.20	-1.0
4,253,861	-		DDA3937_RS18610	0.21	-1.4
4,253,861	-		DDA3937_RS18610	0.21	-0.9
4,253,861	-		DDA3937_RS18610	0.21	-1.5
4,253,861	-		DDA3937_RS18610	0.21	-2.0
4,253,861	-		DDA3937_RS18610	0.21	-1.0
4,253,865	-				+0.4
4,253,865	-		DDA3937_RS18610	0.22	-1.8
4,253,883	-		DDA3937_RS18610	0.28	-1.1
4,253,883	-		DDA3937_RS18610	0.28	-2.1
4,253,883	-		DDA3937_RS18610	0.28	-0.6
4,253,883	-		DDA3937_RS18610	0.28	-1.0
4,253,883	-		DDA3937_RS18610	0.28	-1.0
4,253,883	-		DDA3937_RS18610	0.28	-2.4
4,253,885	+		DDA3937_RS18610	0.29	-1.3
4,253,886	-		DDA3937_RS18610	0.29	-0.2
4,253,886	-		DDA3937_RS18610	0.29	-1.1
4,253,886	-		DDA3937_RS18610	0.29	-1.7
4,253,886	-		DDA3937_RS18610	0.29	-1.3
4,253,886	-		DDA3937_RS18610	0.29	-1.7
4,253,886	-		DDA3937_RS18610	0.29	-1.2
4,253,886	-		DDA3937_RS18610	0.29	-1.3
4,253,886	-		DDA3937_RS18610	0.29	-1.2
4,253,914	-		DDA3937_RS18610	0.38	-1.0
4,253,914	-		DDA3937_RS18610	0.38	+0.1
4,253,914	-		DDA3937_RS18610	0.38	-2.0
4,253,918	+				+0.1
4,253,919	-		DDA3937_RS18610	0.40	-2.6
4,253,935	+		DDA3937_RS18610	0.45	-1.7
4,253,935	+		DDA3937_RS18610	0.45	-1.4
4,253,936	-		DDA3937_RS18610	0.46	-1.8
4,253,936	-		DDA3937_RS18610	0.46	-2.4
4,254,026	-		DDA3937_RS18610	0.76	-3.3
4,254,026	-		DDA3937_RS18610	0.76	+0.1
4,254,026	-		DDA3937_RS18610	0.76	-2.0
4,254,026	-		DDA3937_RS18610	0.76	-0.8
4,254,026	-		DDA3937_RS18610	0.76	-2.7
4,254,101	+				+2.1
4,254,102	-				-2.5
4,254,102	-				-1.9
4,254,104	-				-1.7
4,254,104	-				-1.9
4,254,104	-				-2.0
4,254,104	-				-3.4
4,254,124	-				-1.7
4,254,124	-				-1.0
4,254,155	+				-1.3
4,254,194	+				-1.2
4,254,222	+				-0.2
4,254,223	-				-0.4
4,254,223	-				+0.2
4,254,223	-				-0.1
4,254,228	-				-0.2
4,254,228	-				-0.1
4,254,240	-				+0.7
4,254,244	+				-0.4
4,254,244	+				+0.0
4,254,244	+				-1.4
4,254,244	+				-0.4
4,254,244	+				-0.8
4,254,244	+				-1.4
4,254,244	+				-1.1
4,254,245	-				+1.1
4,254,245	-				-0.1
4,254,245	-				+0.3
4,254,251	+				-0.2
4,254,252	-				+0.5
4,254,379	+		DDA3937_RS18615	0.14	-2.1
4,254,380	-		DDA3937_RS18615	0.15	-1.8
4,254,395	-		DDA3937_RS18615	0.16	-1.7
4,254,415	+		DDA3937_RS18615	0.18	-0.5
4,254,415	+		DDA3937_RS18615	0.18	+0.5