Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18550 and DDA3937_RS18555 are separated by 129 nucleotides DDA3937_RS18555 and DDA3937_RS18560 are separated by 11 nucleotides DDA3937_RS18560 and DDA3937_RS18565 are separated by 104 nucleotides DDA3937_RS18565 and DDA3937_RS18570 overlap by 1 nucleotides
DDA3937_RS18550: DDA3937_RS18550 - deoxyribonuclease I, at 4,242,052 to 4,242,750
_RS18550
DDA3937_RS18555: DDA3937_RS18555 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 4,242,880 to 4,243,614
_RS18555
DDA3937_RS18560: DDA3937_RS18560 - glutathione synthase, at 4,243,626 to 4,244,579
_RS18560
DDA3937_RS18565: DDA3937_RS18565 - YqgE/AlgH family protein, at 4,244,684 to 4,245,247
_RS18565
DDA3937_RS18570: DDA3937_RS18570 - Holliday junction resolvase RuvX, at 4,245,247 to 4,245,678
_RS18570
Position (kb) 4243
4244
4245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4242.705 kb on - strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.725 kb on - strand at 4242.725 kb on - strand at 4242.725 kb on - strand at 4242.761 kb on + strand at 4242.762 kb on - strand at 4242.762 kb on - strand at 4242.762 kb on - strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.781 kb on + strand at 4242.782 kb on - strand at 4242.782 kb on - strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.864 kb on + strand at 4242.864 kb on + strand at 4242.864 kb on + strand at 4242.875 kb on + strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.029 kb on - strand, within DDA3937_RS18555 at 4243.195 kb on - strand, within DDA3937_RS18555 at 4243.383 kb on - strand, within DDA3937_RS18555 at 4243.383 kb on - strand, within DDA3937_RS18555 at 4243.416 kb on + strand, within DDA3937_RS18555 at 4243.416 kb on + strand, within DDA3937_RS18555 at 4243.417 kb on - strand, within DDA3937_RS18555 at 4243.518 kb on + strand, within DDA3937_RS18555 at 4243.525 kb on - strand, within DDA3937_RS18555 at 4243.525 kb on - strand, within DDA3937_RS18555 at 4243.621 kb on + strand at 4243.621 kb on + strand at 4243.621 kb on + strand at 4243.670 kb on + strand at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand at 4243.737 kb on - strand at 4243.737 kb on - strand, within DDA3937_RS18560 at 4243.806 kb on + strand, within DDA3937_RS18560 at 4243.812 kb on + strand, within DDA3937_RS18560 at 4243.914 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4244.286 kb on + strand, within DDA3937_RS18560 at 4244.529 kb on - strand at 4244.532 kb on - strand at 4244.583 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.612 kb on - strand at 4244.612 kb on - strand at 4244.612 kb on - strand at 4244.677 kb on - strand at 4244.677 kb on - strand at 4244.677 kb on - strand at 4244.691 kb on + strand at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.833 kb on + strand, within DDA3937_RS18565 at 4244.872 kb on + strand, within DDA3937_RS18565 at 4244.872 kb on + strand, within DDA3937_RS18565 at 4244.872 kb on + strand, within DDA3937_RS18565 at 4244.944 kb on + strand, within DDA3937_RS18565 at 4244.976 kb on + strand, within DDA3937_RS18565 at 4245.001 kb on + strand, within DDA3937_RS18565 at 4245.001 kb on + strand, within DDA3937_RS18565 at 4245.001 kb on + strand, within DDA3937_RS18565 at 4245.132 kb on + strand, within DDA3937_RS18565 at 4245.132 kb on + strand, within DDA3937_RS18565 at 4245.132 kb on + strand, within DDA3937_RS18565 at 4245.133 kb on - strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.151 kb on - strand, within DDA3937_RS18565 at 4245.151 kb on - strand, within DDA3937_RS18565 at 4245.151 kb on - strand, within DDA3937_RS18565 at 4245.217 kb on + strand at 4245.217 kb on + strand at 4245.220 kb on + strand at 4245.258 kb on + strand at 4245.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,242,705 - -0.6 4,242,724 + +1.1 4,242,724 + -0.7 4,242,724 + +0.3 4,242,724 + -0.9 4,242,725 - +0.0 4,242,725 - -1.4 4,242,725 - -1.7 4,242,761 + -0.4 4,242,762 - +0.4 4,242,762 - -0.4 4,242,762 - -0.7 4,242,764 + -0.1 4,242,764 + +0.5 4,242,764 + -0.4 4,242,764 + +0.1 4,242,765 - +0.2 4,242,765 - -1.2 4,242,765 - +0.4 4,242,765 - +0.6 4,242,781 + -0.4 4,242,782 - -0.3 4,242,782 - -1.2 4,242,783 + -0.9 4,242,783 + +0.2 4,242,783 + +0.6 4,242,783 + +0.1 4,242,783 + -0.3 4,242,783 + -0.4 4,242,783 + -0.9 4,242,783 + +0.5 4,242,783 + -0.5 4,242,784 - +0.2 4,242,784 - -0.4 4,242,784 - -1.1 4,242,784 - -0.9 4,242,784 - -0.4 4,242,864 + +0.4 4,242,864 + -0.9 4,242,864 + +1.8 4,242,875 + -0.2 4,242,876 - -2.2 4,242,876 - +1.0 4,242,876 - +0.1 4,242,876 - +0.0 4,242,876 - +0.4 4,243,028 + DDA3937_RS18555 0.20 +0.1 4,243,028 + DDA3937_RS18555 0.20 +0.4 4,243,028 + DDA3937_RS18555 0.20 -1.4 4,243,029 - DDA3937_RS18555 0.20 -0.9 4,243,195 - DDA3937_RS18555 0.43 -1.7 4,243,383 - DDA3937_RS18555 0.68 -1.4 4,243,383 - DDA3937_RS18555 0.68 -0.3 4,243,416 + DDA3937_RS18555 0.73 -0.2 4,243,416 + DDA3937_RS18555 0.73 +1.1 4,243,417 - DDA3937_RS18555 0.73 +0.4 4,243,518 + DDA3937_RS18555 0.87 -1.4 4,243,525 - DDA3937_RS18555 0.88 -0.1 4,243,525 - DDA3937_RS18555 0.88 -0.3 4,243,621 + -0.4 4,243,621 + -0.9 4,243,621 + +0.6 4,243,670 + -1.1 4,243,734 + DDA3937_RS18560 0.11 -0.7 4,243,734 + DDA3937_RS18560 0.11 -0.2 4,243,734 + DDA3937_RS18560 0.11 -0.5 4,243,734 + +1.1 4,243,737 - +1.1 4,243,737 - DDA3937_RS18560 0.12 -2.4 4,243,806 + DDA3937_RS18560 0.19 -2.0 4,243,812 + DDA3937_RS18560 0.19 +1.1 4,243,914 + DDA3937_RS18560 0.30 -0.6 4,243,923 + DDA3937_RS18560 0.31 +0.1 4,243,923 + DDA3937_RS18560 0.31 -1.4 4,243,923 + DDA3937_RS18560 0.31 -0.1 4,243,924 - DDA3937_RS18560 0.31 -0.4 4,243,924 - DDA3937_RS18560 0.31 -1.4 4,243,924 - DDA3937_RS18560 0.31 -1.2 4,244,286 + DDA3937_RS18560 0.69 -0.9 4,244,529 - -1.7 4,244,532 - -0.9 4,244,583 + -0.3 4,244,611 + -0.3 4,244,611 + -2.8 4,244,611 + -0.6 4,244,611 + -1.4 4,244,611 + +0.1 4,244,611 + +0.9 4,244,612 - +0.3 4,244,612 - -0.4 4,244,612 - +0.6 4,244,677 - -0.4 4,244,677 - +1.0 4,244,677 - -0.2 4,244,691 + +0.1 4,244,756 + DDA3937_RS18565 0.13 -1.9 4,244,756 + DDA3937_RS18565 0.13 +0.9 4,244,756 + DDA3937_RS18565 0.13 -0.6 4,244,756 + DDA3937_RS18565 0.13 +1.5 4,244,756 + DDA3937_RS18565 0.13 -2.2 4,244,756 + DDA3937_RS18565 0.13 -0.2 4,244,756 + DDA3937_RS18565 0.13 -0.0 4,244,756 + DDA3937_RS18565 0.13 -0.4 4,244,833 + DDA3937_RS18565 0.26 -1.0 4,244,872 + DDA3937_RS18565 0.33 +0.8 4,244,872 + DDA3937_RS18565 0.33 -0.4 4,244,872 + DDA3937_RS18565 0.33 +0.6 4,244,944 + DDA3937_RS18565 0.46 +0.1 4,244,976 + DDA3937_RS18565 0.52 +0.0 4,245,001 + DDA3937_RS18565 0.56 -0.3 4,245,001 + DDA3937_RS18565 0.56 +0.1 4,245,001 + DDA3937_RS18565 0.56 -0.5 4,245,132 + DDA3937_RS18565 0.79 +0.7 4,245,132 + DDA3937_RS18565 0.79 +0.3 4,245,132 + DDA3937_RS18565 0.79 -0.2 4,245,133 - DDA3937_RS18565 0.80 -1.2 4,245,150 + DDA3937_RS18565 0.83 -0.0 4,245,150 + DDA3937_RS18565 0.83 -0.3 4,245,150 + DDA3937_RS18565 0.83 -0.4 4,245,150 + DDA3937_RS18565 0.83 -0.9 4,245,150 + DDA3937_RS18565 0.83 +1.6 4,245,150 + DDA3937_RS18565 0.83 +1.1 4,245,151 - DDA3937_RS18565 0.83 -1.9 4,245,151 - DDA3937_RS18565 0.83 -1.4 4,245,151 - DDA3937_RS18565 0.83 -1.1 4,245,217 + +0.3 4,245,217 + +0.1 4,245,220 + -0.2 4,245,258 + +0.3 4,245,258 + -1.2
Or see this region's nucleotide sequence