Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18285 and DDA3937_RS18290 are separated by 110 nucleotides DDA3937_RS18290 and DDA3937_RS18295 overlap by 16 nucleotides DDA3937_RS18295 and DDA3937_RS18300 are separated by 161 nucleotides DDA3937_RS18300 and DDA3937_RS18305 are separated by 101 nucleotides
DDA3937_RS18285: DDA3937_RS18285 - type 3 dihydrofolate reductase, at 4,176,032 to 4,176,511
_RS18285
DDA3937_RS18290: DDA3937_RS18290 - threonine/serine exporter, at 4,176,622 to 4,177,092
_RS18290
DDA3937_RS18295: DDA3937_RS18295 - threonine/serine exporter ThrE family protein, at 4,177,077 to 4,177,859
_RS18295
DDA3937_RS18300: DDA3937_RS18300 - LysE family translocator, at 4,178,021 to 4,178,635
_RS18300
DDA3937_RS18305: DDA3937_RS18305 - carbamoyl-phosphate synthase large subunit, at 4,178,737 to 4,181,961
_RS18305
Position (kb) 4177
4178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4176.217 kb on + strand, within DDA3937_RS18285 at 4176.518 kb on - strand at 4176.532 kb on + strand at 4176.549 kb on + strand at 4176.549 kb on + strand at 4176.550 kb on - strand at 4176.550 kb on - strand at 4176.551 kb on + strand at 4176.552 kb on - strand at 4176.552 kb on - strand at 4176.576 kb on + strand at 4176.576 kb on + strand at 4176.600 kb on + strand at 4176.604 kb on + strand at 4176.605 kb on - strand at 4176.623 kb on + strand at 4176.623 kb on + strand at 4176.623 kb on + strand at 4176.625 kb on + strand at 4176.625 kb on + strand at 4176.626 kb on - strand at 4176.626 kb on - strand at 4176.640 kb on - strand at 4176.640 kb on - strand at 4176.668 kb on - strand at 4176.694 kb on - strand, within DDA3937_RS18290 at 4176.694 kb on - strand, within DDA3937_RS18290 at 4176.747 kb on - strand, within DDA3937_RS18290 at 4176.747 kb on - strand, within DDA3937_RS18290 at 4176.789 kb on - strand, within DDA3937_RS18290 at 4176.789 kb on - strand, within DDA3937_RS18290 at 4176.798 kb on + strand, within DDA3937_RS18290 at 4176.831 kb on + strand, within DDA3937_RS18290 at 4176.873 kb on + strand, within DDA3937_RS18290 at 4176.883 kb on - strand, within DDA3937_RS18290 at 4176.935 kb on + strand, within DDA3937_RS18290 at 4176.953 kb on - strand, within DDA3937_RS18290 at 4177.012 kb on - strand, within DDA3937_RS18290 at 4177.015 kb on + strand, within DDA3937_RS18290 at 4177.015 kb on + strand, within DDA3937_RS18290 at 4177.016 kb on - strand, within DDA3937_RS18290 at 4177.016 kb on - strand, within DDA3937_RS18290 at 4177.021 kb on - strand, within DDA3937_RS18290 at 4177.134 kb on - strand at 4177.205 kb on + strand, within DDA3937_RS18295 at 4177.206 kb on - strand, within DDA3937_RS18295 at 4177.248 kb on + strand, within DDA3937_RS18295 at 4177.353 kb on - strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.530 kb on - strand, within DDA3937_RS18295 at 4177.571 kb on + strand at 4177.571 kb on + strand, within DDA3937_RS18295 at 4177.571 kb on + strand, within DDA3937_RS18295 at 4177.571 kb on + strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.619 kb on + strand, within DDA3937_RS18295 at 4177.619 kb on + strand, within DDA3937_RS18295 at 4177.619 kb on + strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.721 kb on + strand, within DDA3937_RS18295 at 4177.721 kb on + strand, within DDA3937_RS18295 at 4177.722 kb on - strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.791 kb on + strand at 4177.827 kb on - strand at 4177.827 kb on - strand at 4177.829 kb on + strand at 4177.829 kb on + strand at 4177.830 kb on - strand at 4177.855 kb on - strand at 4177.855 kb on - strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.886 kb on + strand at 4177.886 kb on + strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.895 kb on + strand at 4177.895 kb on + strand at 4177.895 kb on + strand at 4177.896 kb on - strand at 4177.896 kb on - strand at 4177.896 kb on - strand at 4177.896 kb on - strand at 4177.897 kb on + strand at 4177.897 kb on + strand at 4177.897 kb on + strand at 4177.898 kb on - strand at 4177.912 kb on + strand at 4177.918 kb on + strand at 4177.918 kb on + strand at 4177.918 kb on + strand at 4177.969 kb on + strand at 4177.972 kb on + strand at 4177.973 kb on - strand at 4177.973 kb on - strand at 4178.094 kb on + strand, within DDA3937_RS18300 at 4178.094 kb on + strand, within DDA3937_RS18300 at 4178.094 kb on + strand, within DDA3937_RS18300 at 4178.184 kb on - strand, within DDA3937_RS18300 at 4178.246 kb on + strand, within DDA3937_RS18300 at 4178.246 kb on + strand, within DDA3937_RS18300 at 4178.247 kb on - strand, within DDA3937_RS18300 at 4178.262 kb on - strand, within DDA3937_RS18300 at 4178.350 kb on - strand, within DDA3937_RS18300 at 4178.471 kb on + strand, within DDA3937_RS18300 at 4178.472 kb on - strand, within DDA3937_RS18300 at 4178.633 kb on + strand at 4178.633 kb on + strand at 4178.634 kb on - strand at 4178.634 kb on - strand at 4178.652 kb on - strand at 4178.676 kb on + strand at 4178.731 kb on + strand at 4178.843 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.855 kb on + strand at 4178.855 kb on + strand at 4178.855 kb on + strand at 4178.856 kb on - strand at 4178.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,176,217 + DDA3937_RS18285 0.39 +0.1 4,176,518 - -2.3 4,176,532 + +0.5 4,176,549 + -0.7 4,176,549 + -1.5 4,176,550 - +0.5 4,176,550 - -0.1 4,176,551 + +0.5 4,176,552 - +0.1 4,176,552 - +0.3 4,176,576 + -0.0 4,176,576 + -1.0 4,176,600 + -0.7 4,176,604 + -0.1 4,176,605 - -0.3 4,176,623 + -0.4 4,176,623 + -1.2 4,176,623 + -0.9 4,176,625 + -0.0 4,176,625 + -0.6 4,176,626 - +0.9 4,176,626 - +0.3 4,176,640 - -0.8 4,176,640 - -0.2 4,176,668 - -2.3 4,176,694 - DDA3937_RS18290 0.15 +0.1 4,176,694 - DDA3937_RS18290 0.15 -2.3 4,176,747 - DDA3937_RS18290 0.27 -0.9 4,176,747 - DDA3937_RS18290 0.27 -0.5 4,176,789 - DDA3937_RS18290 0.35 +0.7 4,176,789 - DDA3937_RS18290 0.35 -0.3 4,176,798 + DDA3937_RS18290 0.37 +0.7 4,176,831 + DDA3937_RS18290 0.44 -0.8 4,176,873 + DDA3937_RS18290 0.53 -0.2 4,176,883 - DDA3937_RS18290 0.55 +0.1 4,176,935 + DDA3937_RS18290 0.66 -1.7 4,176,953 - DDA3937_RS18290 0.70 -0.5 4,177,012 - DDA3937_RS18290 0.83 +1.1 4,177,015 + DDA3937_RS18290 0.83 -0.2 4,177,015 + DDA3937_RS18290 0.83 -0.0 4,177,016 - DDA3937_RS18290 0.84 -0.2 4,177,016 - DDA3937_RS18290 0.84 +0.1 4,177,021 - DDA3937_RS18290 0.85 +0.5 4,177,134 - -1.3 4,177,205 + DDA3937_RS18295 0.16 -0.0 4,177,206 - DDA3937_RS18295 0.16 -0.0 4,177,248 + DDA3937_RS18295 0.22 +0.0 4,177,353 - DDA3937_RS18295 0.35 -1.5 4,177,396 + DDA3937_RS18295 0.41 -0.6 4,177,396 + DDA3937_RS18295 0.41 +0.2 4,177,396 + DDA3937_RS18295 0.41 +0.1 4,177,396 + DDA3937_RS18295 0.41 +1.1 4,177,396 + DDA3937_RS18295 0.41 -1.5 4,177,397 - DDA3937_RS18295 0.41 -1.5 4,177,397 - DDA3937_RS18295 0.41 -0.0 4,177,397 - DDA3937_RS18295 0.41 -0.4 4,177,397 - DDA3937_RS18295 0.41 -0.4 4,177,397 - DDA3937_RS18295 0.41 -0.4 4,177,397 - DDA3937_RS18295 0.41 -0.7 4,177,397 - DDA3937_RS18295 0.41 -1.2 4,177,397 - DDA3937_RS18295 0.41 +0.2 4,177,397 - DDA3937_RS18295 0.41 -0.8 4,177,530 - DDA3937_RS18295 0.58 -0.9 4,177,571 + +0.7 4,177,571 + DDA3937_RS18295 0.63 -0.0 4,177,571 + DDA3937_RS18295 0.63 +0.0 4,177,571 + DDA3937_RS18295 0.63 -0.3 4,177,572 - DDA3937_RS18295 0.63 -0.5 4,177,572 - DDA3937_RS18295 0.63 -0.6 4,177,572 - DDA3937_RS18295 0.63 -0.9 4,177,572 - DDA3937_RS18295 0.63 -1.2 4,177,572 - DDA3937_RS18295 0.63 +0.7 4,177,619 + DDA3937_RS18295 0.69 -0.9 4,177,619 + DDA3937_RS18295 0.69 +0.3 4,177,619 + DDA3937_RS18295 0.69 -0.9 4,177,620 - DDA3937_RS18295 0.69 -0.2 4,177,620 - DDA3937_RS18295 0.69 -0.6 4,177,620 - DDA3937_RS18295 0.69 +1.1 4,177,620 - DDA3937_RS18295 0.69 -0.1 4,177,620 - +2.1 4,177,620 - DDA3937_RS18295 0.69 +0.5 4,177,620 - DDA3937_RS18295 0.69 +0.2 4,177,721 + DDA3937_RS18295 0.82 +0.1 4,177,721 + DDA3937_RS18295 0.82 -1.9 4,177,722 - DDA3937_RS18295 0.82 -1.3 4,177,772 + DDA3937_RS18295 0.89 -2.0 4,177,772 + DDA3937_RS18295 0.89 -0.4 4,177,772 + DDA3937_RS18295 0.89 -0.2 4,177,772 + DDA3937_RS18295 0.89 -0.4 4,177,772 + DDA3937_RS18295 0.89 +0.1 4,177,772 + DDA3937_RS18295 0.89 -0.4 4,177,772 + DDA3937_RS18295 0.89 -2.3 4,177,772 + DDA3937_RS18295 0.89 +0.1 4,177,773 - DDA3937_RS18295 0.89 +0.1 4,177,773 - DDA3937_RS18295 0.89 -0.9 4,177,773 - DDA3937_RS18295 0.89 -1.5 4,177,773 - DDA3937_RS18295 0.89 +0.6 4,177,773 - DDA3937_RS18295 0.89 -0.1 4,177,773 - DDA3937_RS18295 0.89 -0.7 4,177,773 - DDA3937_RS18295 0.89 -0.9 4,177,773 - DDA3937_RS18295 0.89 -1.7 4,177,773 - DDA3937_RS18295 0.89 -0.8 4,177,791 + +0.9 4,177,827 - -0.2 4,177,827 - -0.4 4,177,829 + -0.2 4,177,829 + -1.0 4,177,830 - -0.5 4,177,855 - +0.2 4,177,855 - -0.3 4,177,862 + +0.6 4,177,862 + -2.2 4,177,862 + -0.3 4,177,862 + +0.1 4,177,862 + -0.5 4,177,863 - -0.6 4,177,863 - +1.3 4,177,863 - -0.2 4,177,863 - -0.4 4,177,863 - -1.2 4,177,863 - -0.6 4,177,863 - -0.5 4,177,863 - -0.5 4,177,863 - +0.3 4,177,886 + -0.0 4,177,886 + +1.7 4,177,887 - +0.9 4,177,887 - -1.3 4,177,887 - -0.1 4,177,887 - +0.3 4,177,887 - -1.2 4,177,887 - -0.4 4,177,887 - +0.3 4,177,887 - -0.1 4,177,887 - +0.0 4,177,895 + -2.0 4,177,895 + -0.2 4,177,895 + +0.5 4,177,896 - +0.7 4,177,896 - -0.9 4,177,896 - -0.5 4,177,896 - +1.1 4,177,897 + +2.1 4,177,897 + -0.4 4,177,897 + -1.4 4,177,898 - -0.5 4,177,912 + -0.6 4,177,918 + +0.6 4,177,918 + -0.1 4,177,918 + -0.0 4,177,969 + +0.1 4,177,972 + -1.2 4,177,973 - -0.3 4,177,973 - -2.5 4,178,094 + DDA3937_RS18300 0.12 -0.1 4,178,094 + DDA3937_RS18300 0.12 -0.8 4,178,094 + DDA3937_RS18300 0.12 -0.3 4,178,184 - DDA3937_RS18300 0.27 -0.5 4,178,246 + DDA3937_RS18300 0.37 +1.0 4,178,246 + DDA3937_RS18300 0.37 -1.2 4,178,247 - DDA3937_RS18300 0.37 -0.8 4,178,262 - DDA3937_RS18300 0.39 -1.1 4,178,350 - DDA3937_RS18300 0.53 -0.4 4,178,471 + DDA3937_RS18300 0.73 -1.7 4,178,472 - DDA3937_RS18300 0.73 +0.7 4,178,633 + +0.2 4,178,633 + +0.0 4,178,634 - -0.2 4,178,634 - +1.7 4,178,652 - +0.5 4,178,676 + -0.1 4,178,731 + -0.5 4,178,843 + +0.7 4,178,853 + -0.2 4,178,853 + +0.7 4,178,853 + +0.6 4,178,853 + -0.6 4,178,853 + -1.2 4,178,853 + +2.1 4,178,853 + -1.6 4,178,853 + +0.1 4,178,853 + -0.3 4,178,853 + -0.0 4,178,853 + +0.1 4,178,854 - -1.5 4,178,854 - -0.3 4,178,854 - -0.4 4,178,854 - +0.8 4,178,854 - +0.1 4,178,854 - +0.2 4,178,854 - -1.3 4,178,854 - +0.3 4,178,854 - +0.7 4,178,854 - -0.4 4,178,854 - -0.5 4,178,855 + -1.0 4,178,855 + -0.4 4,178,855 + +0.6 4,178,856 - -0.8 4,178,856 - +0.1
Or see this region's nucleotide sequence