Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16645

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,788,688	-		DDA3937_RS16640	0.25	-0.0
3,788,695	+		DDA3937_RS16640	0.26	-0.4
3,788,695	+		DDA3937_RS16640	0.26	+0.1
3,788,696	-		DDA3937_RS16640	0.26	+0.4
3,788,696	-		DDA3937_RS16640	0.26	-1.4
3,788,822	-		DDA3937_RS16640	0.36	-1.6
3,788,851	-		DDA3937_RS16640	0.38	-0.7
3,788,877	+		DDA3937_RS16640	0.40	-0.0
3,788,877	+		DDA3937_RS16640	0.40	-1.3
3,788,877	+		DDA3937_RS16640	0.40	+0.1
3,788,878	-		DDA3937_RS16640	0.40	+0.5
3,788,878	-		DDA3937_RS16640	0.40	-0.1
3,788,948	-		DDA3937_RS16640	0.46	+0.3
3,788,948	-		DDA3937_RS16640	0.46	-0.7
3,789,105	+		DDA3937_RS16640	0.59	-2.0
3,789,105	+		DDA3937_RS16640	0.59	-0.3
3,789,113	+		DDA3937_RS16640	0.59	-0.2
3,789,113	+		DDA3937_RS16640	0.59	+0.4
3,789,113	+		DDA3937_RS16640	0.59	+0.3
3,789,113	+		DDA3937_RS16640	0.59	-1.6
3,789,114	-		DDA3937_RS16640	0.59	+1.0
3,789,114	-		DDA3937_RS16640	0.59	-0.8
3,789,114	-		DDA3937_RS16640	0.59	-0.8
3,789,114	-		DDA3937_RS16640	0.59	-0.2
3,789,133	+		DDA3937_RS16640	0.61	+1.1
3,789,230	+		DDA3937_RS16640	0.69	-0.7
3,789,230	+		DDA3937_RS16640	0.69	+1.0
3,789,230	+		DDA3937_RS16640	0.69	-0.4
3,789,231	-		DDA3937_RS16640	0.69	-1.2
3,789,244	+		DDA3937_RS16640	0.70	-0.3
3,789,245	-		DDA3937_RS16640	0.70	-0.0
3,789,248	+		DDA3937_RS16640	0.70	-0.2
3,789,248	+		DDA3937_RS16640	0.70	-0.3
3,789,249	-		DDA3937_RS16640	0.70	-1.5
3,789,456	+		DDA3937_RS16640	0.87	-1.5
3,789,457	-		DDA3937_RS16640	0.87	+1.0
3,789,457	-		DDA3937_RS16640	0.87	-1.2
3,789,501	+				+1.3
3,789,502	-				-0.2
3,789,658	+				-0.3
3,789,669	-				-0.4
3,789,683	+				-0.2
3,789,684	-				+0.6
3,789,754	-				-0.0
3,789,754	-				+0.4
3,790,014	-		DDA3937_RS16645	0.45	-1.1
3,790,014	-		DDA3937_RS16645	0.45	-0.7
3,790,014	-		DDA3937_RS16645	0.45	+0.5
3,790,014	-		DDA3937_RS16645	0.45	+0.1
3,790,220	-		DDA3937_RS16645	0.73	+0.2
3,790,220	-		DDA3937_RS16645	0.73	-0.1
3,790,221	+		DDA3937_RS16645	0.74	-3.1
3,790,221	+		DDA3937_RS16645	0.74	-0.4
3,790,222	-		DDA3937_RS16645	0.74	+0.7
3,790,222	-		DDA3937_RS16645	0.74	+0.4
3,790,222	-		DDA3937_RS16645	0.74	-0.9
3,790,285	-		DDA3937_RS16645	0.82	-0.3
3,790,379	+				+0.5
3,790,379	+				-1.2
3,790,379	+				-0.1
3,790,379	+				-0.0
3,790,380	-				+0.5
3,790,383	+				-2.0
3,790,384	-				-0.8
3,790,396	-				-0.9
3,790,440	+				-0.1
3,790,440	+				-0.6
3,790,440	+				-0.9
3,790,440	+				-0.0
3,790,441	-				-0.2
3,790,444	-				-0.3
3,790,444	-				+1.0
3,790,444	-				-0.1
3,790,471	-		DDA3937_RS16650	0.12	+0.5
3,790,519	+		DDA3937_RS16650	0.19	+0.3
3,790,742	-		DDA3937_RS16650	0.53	-0.2
3,790,989	-				+0.8
3,791,027	-				-0.3
3,791,039	-				+0.2
3,791,144	+		DDA3937_RS16655	0.14	-0.5
3,791,144	+		DDA3937_RS16655	0.14	-0.2
3,791,145	-		DDA3937_RS16655	0.14	-1.8
3,791,145	-		DDA3937_RS16655	0.14	-1.0
3,791,145	-		DDA3937_RS16655	0.14	-0.3
3,791,145	-		DDA3937_RS16655	0.14	+0.9
3,791,145	-		DDA3937_RS16655	0.14	-0.3
3,791,145	-		DDA3937_RS16655	0.14	-0.5
3,791,179	+		DDA3937_RS16655	0.19	-0.0
3,791,180	-		DDA3937_RS16655	0.20	+0.7
3,791,180	-		DDA3937_RS16655	0.20	+0.4
3,791,180	-		DDA3937_RS16655	0.20	+0.6
3,791,405	+		DDA3937_RS16655	0.53	+0.3
3,791,405	+		DDA3937_RS16655	0.53	-1.6