Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15780

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,613,272	+				-1.6
3,613,272	+				+0.9
3,613,273	-				-0.5
3,613,313	+				-0.2
3,613,313	+				-0.3
3,613,313	+				-0.2
3,613,314	-				-1.1
3,613,391	+				+0.9
3,613,392	-				-0.7
3,613,453	+		DDA3937_RS15775	0.10	-2.4
3,613,528	-		DDA3937_RS15775	0.20	-3.5
3,613,692	-		DDA3937_RS15775	0.42	-0.1
3,613,738	-		DDA3937_RS15775	0.48	-1.4
3,613,742	+		DDA3937_RS15775	0.49	-2.1
3,613,742	+		DDA3937_RS15775	0.49	-0.2
3,613,743	-		DDA3937_RS15775	0.49	-0.2
3,613,743	-		DDA3937_RS15775	0.49	-0.1
3,614,076	+				-0.3
3,614,103	+				-0.4
3,614,103	+				+0.9
3,614,103	+				-1.1
3,614,103	+				-0.6
3,614,104	-				-0.6
3,614,104	-				-1.4
3,614,104	-				-0.1
3,614,104	-				-0.7
3,614,104	-				-0.5
3,614,104	-				+0.5
3,614,134	+				-0.1
3,614,134	+				-1.9
3,614,135	-				-0.1
3,614,152	-				+0.4
3,614,156	+				-2.8
3,614,156	+				+1.0
3,614,190	-				+0.5
3,614,226	+				-0.6
3,614,226	+				+0.9
3,614,226	+				-0.5
3,614,226	+				-0.3
3,614,226	+				-0.0
3,614,227	-				-0.2
3,614,227	-				+0.5
3,614,227	-				+0.9
3,614,227	-				+0.0
3,614,228	+				-0.5
3,614,228	+				+0.2
3,614,228	+				-2.1
3,614,229	-				-1.0
3,614,229	-				-0.8
3,614,229	-				-0.3
3,614,250	+				-0.2
3,614,250	+				-0.5
3,614,250	+				-0.1
3,614,250	+				-1.5
3,614,251	-				-0.1
3,614,251	-				+0.4
3,614,251	-				-0.3
3,614,251	-				-0.3
3,614,427	+		DDA3937_RS15780	0.13	-0.4
3,614,428	-		DDA3937_RS15780	0.13	-1.6
3,614,490	-		DDA3937_RS15780	0.17	-1.1
3,614,490	-		DDA3937_RS15780	0.17	+1.9
3,614,601	+				-0.6
3,614,601	+		DDA3937_RS15780	0.25	-0.1
3,614,601	+		DDA3937_RS15780	0.25	+0.9
3,614,601	+		DDA3937_RS15780	0.25	-0.9
3,614,602	-		DDA3937_RS15780	0.26	-0.9
3,614,673	+		DDA3937_RS15780	0.31	-1.2
3,614,674	-		DDA3937_RS15780	0.31	-1.1
3,614,931	+		DDA3937_RS15780	0.50	-1.5
3,614,931	+				+0.9
3,614,932	-		DDA3937_RS15780	0.50	+0.9
3,614,934	+		DDA3937_RS15780	0.50	-1.9
3,614,968	+		DDA3937_RS15780	0.53	-1.1
3,614,968	+		DDA3937_RS15780	0.53	-0.7
3,614,999	-		DDA3937_RS15780	0.55	-2.2
3,614,999	-		DDA3937_RS15780	0.55	-0.6
3,615,019	+		DDA3937_RS15780	0.56	-1.4
3,615,023	+		DDA3937_RS15780	0.57	-0.6
3,615,023	+		DDA3937_RS15780	0.57	-0.3
3,615,024	-		DDA3937_RS15780	0.57	-1.1
3,615,085	-		DDA3937_RS15780	0.61	-0.4
3,615,324	+		DDA3937_RS15780	0.79	-1.1
3,615,324	+		DDA3937_RS15780	0.79	-0.3
3,615,351	+		DDA3937_RS15780	0.81	-1.4
3,615,351	+		DDA3937_RS15780	0.81	-1.6
3,615,379	+		DDA3937_RS15780	0.83	-2.1
3,615,511	+				-1.2
3,615,533	+				+0.6
3,615,617	+				-0.1
3,615,617	+				-1.4
3,615,617	+				-0.4
3,615,617	+				+0.7
3,615,618	-				-0.2
3,615,618	-				-0.2
3,615,618	-				-0.9
3,615,623	+				+0.2
3,615,623	+				+0.3
3,615,623	+				+0.4
3,615,624	-				-1.1
3,615,624	-				-0.5
3,615,683	-				+3.3
3,615,732	+				-0.1
3,615,732	+				+0.1
3,615,732	+				-0.1
3,615,732	+				+0.4
3,615,733	-				+1.1
3,615,733	-				-2.4
3,615,733	-				+0.0
3,615,733	-				-0.1
3,615,807	-				+0.9
3,615,807	-				-0.1
3,615,821	+				-1.7
3,615,821	+				+0.2
3,615,821	+				-1.3
3,615,821	+				-1.7
3,615,821	+				-0.2
3,615,822	-				+0.5
3,615,822	-				+0.5
3,615,822	-				-0.4
3,615,822	-				-0.4
3,615,822	-				+0.7
3,615,846	+				+0.3
3,615,890	+				-1.1
3,615,890	+				+0.2
3,615,977	-		DDA3937_RS15785	0.28	+0.9
3,616,035	+		DDA3937_RS15785	0.43	-0.1
3,616,036	-		DDA3937_RS15785	0.43	+2.9
3,616,036	-		DDA3937_RS15785	0.43	+0.2
3,616,055	+		DDA3937_RS15785	0.48	-1.6
3,616,056	-		DDA3937_RS15785	0.48	-0.6
3,616,056	-				-1.6
3,616,094	-		DDA3937_RS15785	0.58	-1.4
3,616,158	+		DDA3937_RS15785	0.75	+1.5
3,616,158	+		DDA3937_RS15785	0.75	-0.2
3,616,158	+		DDA3937_RS15785	0.75	-0.3
3,616,159	-		DDA3937_RS15785	0.75	-0.3
3,616,159	-		DDA3937_RS15785	0.75	-1.4
3,616,220	+				-0.5
3,616,220	+				-1.2
3,616,220	+				-0.4
3,616,221	-				-0.1
3,616,221	-				+0.4
3,616,221	-				-0.5
3,616,241	+				-1.3
3,616,241	+				-2.4
3,616,241	+				-0.6
3,616,242	-				-0.2
3,616,242	-				-1.2
3,616,254	+				-0.3
3,616,279	-				+0.2
3,616,328	+				-1.6
3,616,365	+				-0.2
3,616,366	-				-0.6
3,616,366	-				+0.2
3,616,366	-				-1.6
3,616,395	+				-0.4
3,616,396	-				-0.6
3,616,398	-				+0.6
3,616,398	-				+0.7
3,616,437	+				+0.9
3,616,451	-				-0.7
3,616,453	-				+0.2
3,616,572	+				-0.9
3,616,573	-				-0.6
3,616,573	-				-1.0
3,616,578	+				-0.5
3,616,596	-				-1.0
3,616,596	-				-0.1