Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15705 and DDA3937_RS15710 are separated by 348 nucleotides DDA3937_RS15710 and DDA3937_RS15715 are separated by 61 nucleotides DDA3937_RS15715 and DDA3937_RS15720 overlap by 1 nucleotides
DDA3937_RS15705: DDA3937_RS15705 - cyclic-guanylate-specific phosphodiesterase, at 3,600,476 to 3,601,267
_RS15705
DDA3937_RS15710: DDA3937_RS15710 - YfhL family 4Fe-4S dicluster ferredoxin, at 3,601,616 to 3,601,876
_RS15710
DDA3937_RS15715: DDA3937_RS15715 - holo-ACP synthase, at 3,601,938 to 3,602,318
_RS15715
DDA3937_RS15720: DDA3937_RS15720 - pyridoxine 5'-phosphate synthase, at 3,602,318 to 3,603,049
_RS15720
Position (kb)
3601
3602 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3600.616 kb on + strand, within DDA3937_RS15705 at 3600.616 kb on + strand, within DDA3937_RS15705 at 3600.616 kb on + strand, within DDA3937_RS15705 at 3600.617 kb on - strand, within DDA3937_RS15705 at 3600.617 kb on - strand, within DDA3937_RS15705 at 3600.617 kb on - strand, within DDA3937_RS15705 at 3600.617 kb on - strand, within DDA3937_RS15705 at 3600.621 kb on + strand, within DDA3937_RS15705 at 3600.621 kb on + strand, within DDA3937_RS15705 at 3600.621 kb on + strand, within DDA3937_RS15705 at 3600.622 kb on - strand, within DDA3937_RS15705 at 3600.685 kb on + strand, within DDA3937_RS15705 at 3600.685 kb on + strand, within DDA3937_RS15705 at 3600.686 kb on - strand, within DDA3937_RS15705 at 3600.720 kb on + strand, within DDA3937_RS15705 at 3600.720 kb on + strand, within DDA3937_RS15705 at 3600.721 kb on - strand, within DDA3937_RS15705 at 3600.721 kb on - strand, within DDA3937_RS15705 at 3600.929 kb on - strand, within DDA3937_RS15705 at 3600.984 kb on - strand, within DDA3937_RS15705 at 3601.006 kb on + strand, within DDA3937_RS15705 at 3601.007 kb on - strand, within DDA3937_RS15705 at 3601.007 kb on - strand, within DDA3937_RS15705 at 3601.007 kb on - strand, within DDA3937_RS15705 at 3601.010 kb on + strand, within DDA3937_RS15705 at 3601.010 kb on + strand, within DDA3937_RS15705 at 3601.028 kb on - strand, within DDA3937_RS15705 at 3601.041 kb on + strand, within DDA3937_RS15705 at 3601.042 kb on - strand, within DDA3937_RS15705 at 3601.042 kb on - strand, within DDA3937_RS15705 at 3601.126 kb on + strand, within DDA3937_RS15705 at 3601.131 kb on + strand, within DDA3937_RS15705 at 3601.240 kb on + strand at 3601.240 kb on + strand at 3601.253 kb on + strand at 3601.253 kb on + strand at 3601.253 kb on + strand at 3601.253 kb on + strand at 3601.253 kb on + strand at 3601.253 kb on + strand at 3601.253 kb on + strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.254 kb on - strand at 3601.255 kb on + strand at 3601.255 kb on + strand at 3601.255 kb on + strand at 3601.255 kb on + strand at 3601.255 kb on + strand at 3601.255 kb on + strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.256 kb on - strand at 3601.276 kb on - strand at 3601.276 kb on - strand at 3601.281 kb on + strand at 3601.281 kb on + strand at 3601.281 kb on + strand at 3601.282 kb on - strand at 3601.282 kb on - strand at 3601.288 kb on - strand at 3601.293 kb on + strand at 3601.293 kb on + strand at 3601.293 kb on + strand at 3601.294 kb on - strand at 3601.295 kb on + strand at 3601.295 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.306 kb on + strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.307 kb on - strand at 3601.355 kb on + strand at 3601.365 kb on + strand at 3601.365 kb on + strand at 3601.365 kb on + strand at 3601.371 kb on - strand at 3601.371 kb on - strand at 3601.371 kb on - strand at 3601.420 kb on - strand at 3601.447 kb on + strand at 3601.447 kb on + strand at 3601.448 kb on - strand at 3601.460 kb on + strand at 3601.461 kb on - strand at 3601.481 kb on + strand at 3601.481 kb on + strand at 3601.482 kb on - strand at 3601.482 kb on - strand at 3601.482 kb on - strand at 3601.483 kb on + strand at 3601.484 kb on - strand at 3601.484 kb on - strand at 3601.484 kb on - strand at 3601.503 kb on + strand at 3601.503 kb on + strand at 3601.541 kb on + strand at 3601.580 kb on + strand at 3601.581 kb on - strand at 3601.581 kb on - strand at 3601.581 kb on - strand at 3601.582 kb on + strand at 3601.582 kb on + strand at 3601.582 kb on + strand at 3601.645 kb on + strand, within DDA3937_RS15710 at 3601.646 kb on - strand, within DDA3937_RS15710 at 3601.646 kb on - strand, within DDA3937_RS15710 at 3601.655 kb on - strand, within DDA3937_RS15710 at 3601.706 kb on + strand, within DDA3937_RS15710 at 3601.706 kb on + strand, within DDA3937_RS15710 at 3601.706 kb on + strand, within DDA3937_RS15710 at 3601.707 kb on - strand, within DDA3937_RS15710 at 3601.722 kb on + strand, within DDA3937_RS15710 at 3601.723 kb on - strand, within DDA3937_RS15710 at 3601.723 kb on - strand, within DDA3937_RS15710 at 3601.729 kb on + strand, within DDA3937_RS15710 at 3601.730 kb on - strand, within DDA3937_RS15710 at 3601.808 kb on - strand, within DDA3937_RS15710 at 3601.808 kb on - strand, within DDA3937_RS15710 at 3601.872 kb on + strand at 3601.872 kb on + strand at 3601.873 kb on - strand at 3601.873 kb on - strand at 3601.873 kb on - strand at 3601.873 kb on - strand at 3601.874 kb on + strand at 3601.874 kb on + strand at 3601.874 kb on + strand at 3601.875 kb on - strand at 3601.875 kb on - strand at 3601.875 kb on - strand at 3601.875 kb on - strand at 3601.875 kb on - strand at 3601.875 kb on - strand at 3601.891 kb on + strand at 3601.892 kb on - strand at 3601.892 kb on - strand at 3601.892 kb on - strand at 3601.892 kb on - strand at 3601.908 kb on + strand at 3601.909 kb on - strand at 3601.909 kb on - strand at 3601.909 kb on - strand at 3601.909 kb on - strand at 3602.052 kb on + strand, within DDA3937_RS15715 at 3602.052 kb on + strand, within DDA3937_RS15715 at 3602.118 kb on - strand, within DDA3937_RS15715 at 3602.201 kb on - strand, within DDA3937_RS15715 at 3602.410 kb on + strand, within DDA3937_RS15720 at 3602.455 kb on + strand, within DDA3937_RS15720 at 3602.455 kb on + strand, within DDA3937_RS15720 at 3602.455 kb on + strand, within DDA3937_RS15720 at 3602.455 kb on + strand, within DDA3937_RS15720 at 3602.455 kb on + strand, within DDA3937_RS15720 at 3602.456 kb on - strand at 3602.456 kb on - strand, within DDA3937_RS15720 at 3602.456 kb on - strand, within DDA3937_RS15720 at 3602.456 kb on - strand at 3602.460 kb on + strand, within DDA3937_RS15720 at 3602.460 kb on + strand, within DDA3937_RS15720 at 3602.460 kb on + strand, within DDA3937_RS15720 at 3602.460 kb on + strand, within DDA3937_RS15720 at 3602.461 kb on - strand, within DDA3937_RS15720 at 3602.461 kb on - strand at 3602.461 kb on - strand, within DDA3937_RS15720 at 3602.461 kb on - strand, within DDA3937_RS15720 at 3602.508 kb on + strand, within DDA3937_RS15720 at 3602.508 kb on + strand at 3602.528 kb on - strand, within DDA3937_RS15720 at 3602.575 kb on - strand, within DDA3937_RS15720 at 3602.575 kb on - strand, within DDA3937_RS15720 at 3602.597 kb on - strand, within DDA3937_RS15720 at 3602.597 kb on - strand at 3602.598 kb on + strand at 3602.598 kb on + strand at 3602.599 kb on - strand, within DDA3937_RS15720 at 3602.599 kb on - strand, within DDA3937_RS15720 at 3602.599 kb on - strand, within DDA3937_RS15720 at 3602.599 kb on - strand, within DDA3937_RS15720 at 3602.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,600,616 + DDA3937_RS15705 0.18 -1.2 3,600,616 + DDA3937_RS15705 0.18 +0.3 3,600,616 + DDA3937_RS15705 0.18 -2.7 3,600,617 - DDA3937_RS15705 0.18 -1.7 3,600,617 - DDA3937_RS15705 0.18 -0.8 3,600,617 - DDA3937_RS15705 0.18 +0.2 3,600,617 - DDA3937_RS15705 0.18 +0.1 3,600,621 + DDA3937_RS15705 0.18 -0.2 3,600,621 + DDA3937_RS15705 0.18 -1.4 3,600,621 + DDA3937_RS15705 0.18 -1.4 3,600,622 - DDA3937_RS15705 0.18 -0.8 3,600,685 + DDA3937_RS15705 0.26 -1.5 3,600,685 + DDA3937_RS15705 0.26 +0.3 3,600,686 - DDA3937_RS15705 0.27 -1.0 3,600,720 + DDA3937_RS15705 0.31 -1.2 3,600,720 + DDA3937_RS15705 0.31 -0.7 3,600,721 - DDA3937_RS15705 0.31 -0.7 3,600,721 - DDA3937_RS15705 0.31 +0.2 3,600,929 - DDA3937_RS15705 0.57 +0.0 3,600,984 - DDA3937_RS15705 0.64 +0.4 3,601,006 + DDA3937_RS15705 0.67 -2.5 3,601,007 - DDA3937_RS15705 0.67 -0.5 3,601,007 - DDA3937_RS15705 0.67 -0.1 3,601,007 - DDA3937_RS15705 0.67 +1.6 3,601,010 + DDA3937_RS15705 0.67 -0.7 3,601,010 + DDA3937_RS15705 0.67 -0.9 3,601,028 - DDA3937_RS15705 0.70 -0.2 3,601,041 + DDA3937_RS15705 0.71 -0.1 3,601,042 - DDA3937_RS15705 0.71 +0.5 3,601,042 - DDA3937_RS15705 0.71 -1.2 3,601,126 + DDA3937_RS15705 0.82 -2.2 3,601,131 + DDA3937_RS15705 0.83 -1.6 3,601,240 + -0.4 3,601,240 + -0.5 3,601,253 + -0.8 3,601,253 + +0.3 3,601,253 + -1.7 3,601,253 + -0.9 3,601,253 + +0.9 3,601,253 + -0.0 3,601,253 + +0.3 3,601,254 - -0.1 3,601,254 - -1.0 3,601,254 - +1.1 3,601,254 - -0.1 3,601,254 - -1.2 3,601,254 - -1.1 3,601,254 - +0.3 3,601,254 - -0.4 3,601,255 + -0.1 3,601,255 + -2.0 3,601,255 + -1.5 3,601,255 + -0.4 3,601,255 + -0.7 3,601,255 + -0.4 3,601,256 - +0.9 3,601,256 - -0.4 3,601,256 - -1.5 3,601,256 - +0.3 3,601,256 - -0.2 3,601,256 - -2.7 3,601,256 - -0.2 3,601,256 - -0.4 3,601,276 - -1.0 3,601,276 - -0.9 3,601,281 + -0.7 3,601,281 + -0.3 3,601,281 + -0.7 3,601,282 - +0.7 3,601,282 - -0.1 3,601,288 - -0.8 3,601,293 + -0.8 3,601,293 + -1.1 3,601,293 + -1.7 3,601,294 - -0.5 3,601,295 + +0.1 3,601,295 + -1.3 3,601,306 + -0.4 3,601,306 + -1.3 3,601,306 + -2.4 3,601,306 + -2.1 3,601,306 + -0.8 3,601,306 + -2.2 3,601,306 + +0.9 3,601,306 + -0.3 3,601,306 + -2.0 3,601,306 + +0.2 3,601,306 + +0.4 3,601,306 + -2.5 3,601,306 + -0.0 3,601,307 - -0.1 3,601,307 - -0.2 3,601,307 - -0.2 3,601,307 - -0.1 3,601,307 - -0.7 3,601,307 - -0.2 3,601,307 - +0.8 3,601,307 - +0.7 3,601,307 - +0.3 3,601,307 - -0.4 3,601,307 - -0.1 3,601,307 - -1.5 3,601,307 - +0.2 3,601,355 + -0.1 3,601,365 + -0.7 3,601,365 + -1.8 3,601,365 + -1.2 3,601,371 - +0.3 3,601,371 - -1.5 3,601,371 - +0.1 3,601,420 - -0.9 3,601,447 + -1.5 3,601,447 + -0.4 3,601,448 - -0.4 3,601,460 + +1.2 3,601,461 - -0.2 3,601,481 + -0.0 3,601,481 + +0.1 3,601,482 - +1.5 3,601,482 - -0.8 3,601,482 - -0.9 3,601,483 + +0.6 3,601,484 - -0.7 3,601,484 - -0.2 3,601,484 - -0.9 3,601,503 + -0.2 3,601,503 + -0.5 3,601,541 + -0.8 3,601,580 + -0.9 3,601,581 - +0.2 3,601,581 - +0.8 3,601,581 - +0.5 3,601,582 + +0.7 3,601,582 + +0.4 3,601,582 + -0.4 3,601,645 + DDA3937_RS15710 0.11 -0.3 3,601,646 - DDA3937_RS15710 0.11 +0.6 3,601,646 - DDA3937_RS15710 0.11 +0.2 3,601,655 - DDA3937_RS15710 0.15 -1.7 3,601,706 + DDA3937_RS15710 0.34 -1.5 3,601,706 + DDA3937_RS15710 0.34 -2.4 3,601,706 + DDA3937_RS15710 0.34 -2.9 3,601,707 - DDA3937_RS15710 0.35 +0.3 3,601,722 + DDA3937_RS15710 0.41 -0.7 3,601,723 - DDA3937_RS15710 0.41 -1.7 3,601,723 - DDA3937_RS15710 0.41 +0.9 3,601,729 + DDA3937_RS15710 0.43 -2.3 3,601,730 - DDA3937_RS15710 0.44 -0.9 3,601,808 - DDA3937_RS15710 0.74 -1.4 3,601,808 - DDA3937_RS15710 0.74 -0.5 3,601,872 + -0.1 3,601,872 + -0.8 3,601,873 - -2.1 3,601,873 - -0.8 3,601,873 - -1.1 3,601,873 - -1.7 3,601,874 + -1.4 3,601,874 + +0.1 3,601,874 + -0.1 3,601,875 - -0.4 3,601,875 - +0.0 3,601,875 - -1.8 3,601,875 - -1.1 3,601,875 - -1.1 3,601,875 - -1.5 3,601,891 + -2.2 3,601,892 - -0.3 3,601,892 - -0.2 3,601,892 - -0.3 3,601,892 - -0.5 3,601,908 + -0.9 3,601,909 - -1.0 3,601,909 - -0.4 3,601,909 - +0.9 3,601,909 - -0.0 3,602,052 + DDA3937_RS15715 0.30 +0.2 3,602,052 + DDA3937_RS15715 0.30 +0.1 3,602,118 - DDA3937_RS15715 0.47 +1.3 3,602,201 - DDA3937_RS15715 0.69 -0.3 3,602,410 + DDA3937_RS15720 0.13 -0.1 3,602,455 + DDA3937_RS15720 0.19 -0.3 3,602,455 + DDA3937_RS15720 0.19 -1.3 3,602,455 + DDA3937_RS15720 0.19 -0.9 3,602,455 + DDA3937_RS15720 0.19 -2.5 3,602,455 + DDA3937_RS15720 0.19 -1.8 3,602,456 - +0.9 3,602,456 - DDA3937_RS15720 0.19 +0.3 3,602,456 - DDA3937_RS15720 0.19 -2.4 3,602,456 - -0.7 3,602,460 + DDA3937_RS15720 0.19 +0.3 3,602,460 + DDA3937_RS15720 0.19 -2.2 3,602,460 + DDA3937_RS15720 0.19 -0.7 3,602,460 + DDA3937_RS15720 0.19 -2.8 3,602,461 - DDA3937_RS15720 0.20 -0.9 3,602,461 - -1.1 3,602,461 - DDA3937_RS15720 0.20 -1.1 3,602,461 - DDA3937_RS15720 0.20 -0.7 3,602,508 + DDA3937_RS15720 0.26 -0.7 3,602,508 + -0.7 3,602,528 - DDA3937_RS15720 0.29 -1.1 3,602,575 - DDA3937_RS15720 0.35 -1.3 3,602,575 - DDA3937_RS15720 0.35 +0.2 3,602,597 - DDA3937_RS15720 0.38 -0.7 3,602,597 - -0.7 3,602,598 + +0.9 3,602,598 + -0.7 3,602,599 - DDA3937_RS15720 0.38 -1.1 3,602,599 - DDA3937_RS15720 0.38 -0.9 3,602,599 - DDA3937_RS15720 0.38 -1.1 3,602,599 - DDA3937_RS15720 0.38 -0.8 3,602,876 + -0.7
Or see this region's nucleotide sequence