Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15445 and DDA3937_RS15450 are separated by 140 nucleotides DDA3937_RS15450 and DDA3937_RS15455 are separated by 10 nucleotides DDA3937_RS15455 and DDA3937_RS15460 are separated by 13 nucleotides
DDA3937_RS15445: DDA3937_RS15445 - ribosome biogenesis GTPase Der, at 3,540,455 to 3,541,942
_RS15445
DDA3937_RS15450: DDA3937_RS15450 - outer membrane protein assembly factor BamB, at 3,542,083 to 3,543,264
_RS15450
DDA3937_RS15455: DDA3937_RS15455 - YfgM family protein, at 3,543,275 to 3,543,895
_RS15455
DDA3937_RS15460: DDA3937_RS15460 - histidine--tRNA ligase, at 3,543,909 to 3,545,183
_RS15460
Position (kb)
3542
3543
3544 Strain fitness (log2 ratio)
-2
-1
0
1 at 3542.265 kb on - strand, within DDA3937_RS15450 at 3542.373 kb on - strand, within DDA3937_RS15450 at 3542.377 kb on - strand, within DDA3937_RS15450 at 3542.487 kb on - strand, within DDA3937_RS15450 at 3543.048 kb on - strand, within DDA3937_RS15450 at 3543.087 kb on - strand, within DDA3937_RS15450 at 3543.253 kb on - strand at 3543.277 kb on - strand at 3543.277 kb on - strand at 3543.277 kb on - strand at 3543.353 kb on - strand, within DDA3937_RS15455 at 3543.353 kb on - strand, within DDA3937_RS15455 at 3543.353 kb on - strand, within DDA3937_RS15455 at 3543.355 kb on - strand, within DDA3937_RS15455 at 3543.355 kb on - strand, within DDA3937_RS15455 at 3543.494 kb on + strand, within DDA3937_RS15455 at 3543.886 kb on - strand at 3543.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,542,265 - DDA3937_RS15450 0.15 -1.9 3,542,373 - DDA3937_RS15450 0.25 -0.3 3,542,377 - DDA3937_RS15450 0.25 -1.1 3,542,487 - DDA3937_RS15450 0.34 -0.1 3,543,048 - DDA3937_RS15450 0.82 -1.1 3,543,087 - DDA3937_RS15450 0.85 -1.3 3,543,253 - -0.7 3,543,277 - +1.5 3,543,277 - -0.6 3,543,277 - -0.5 3,543,353 - DDA3937_RS15455 0.13 +0.7 3,543,353 - DDA3937_RS15455 0.13 -1.4 3,543,353 - DDA3937_RS15455 0.13 +0.7 3,543,355 - DDA3937_RS15455 0.13 -0.8 3,543,355 - DDA3937_RS15455 0.13 -0.3 3,543,494 + DDA3937_RS15455 0.35 +0.3 3,543,886 - +0.5 3,543,886 - -0.5
Or see this region's nucleotide sequence