Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15155

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,478,087	+		DDA3937_RS15150	0.54	-1.9
3,478,088	-		DDA3937_RS15150	0.54	+0.1
3,478,091	+				-0.7
3,478,092	-		DDA3937_RS15150	0.54	+0.2
3,478,325	+		DDA3937_RS15150	0.65	-0.4
3,478,325	+		DDA3937_RS15150	0.65	-1.6
3,478,373	+		DDA3937_RS15150	0.67	-1.1
3,478,373	+		DDA3937_RS15150	0.67	-1.8
3,478,373	+		DDA3937_RS15150	0.67	-1.1
3,478,373	+		DDA3937_RS15150	0.67	-0.7
3,478,373	+		DDA3937_RS15150	0.67	-1.1
3,478,373	+		DDA3937_RS15150	0.67	+0.3
3,478,374	-		DDA3937_RS15150	0.67	-0.1
3,478,374	-		DDA3937_RS15150	0.67	-2.4
3,478,376	-		DDA3937_RS15150	0.68	-1.4
3,478,383	-		DDA3937_RS15150	0.68	-0.3
3,478,608	+		DDA3937_RS15150	0.79	-0.8
3,478,654	-		DDA3937_RS15150	0.81	-1.1
3,478,723	+		DDA3937_RS15150	0.84	-1.2
3,478,757	+		DDA3937_RS15150	0.86	-1.7
3,478,757	+		DDA3937_RS15150	0.86	-1.1
3,478,757	+		DDA3937_RS15150	0.86	-2.1
3,478,758	-		DDA3937_RS15150	0.86	-0.6
3,478,758	-		DDA3937_RS15150	0.86	-1.4
3,478,984	-				-0.7
3,479,003	+				-1.3
3,479,003	+				-1.1
3,479,003	+				-0.7
3,479,003	+				+0.9
3,479,003	+				-0.5
3,479,003	+				-1.3
3,479,003	+				-1.5
3,479,004	-				-1.4
3,479,004	-				-1.6
3,479,004	-				-0.1
3,479,004	-				-0.7
3,479,004	-				-0.7
3,479,004	-				+0.1
3,479,004	-				-1.1
3,479,004	-				+0.6
3,479,004	-				-1.0
3,479,004	-				-0.9
3,479,004	-				-1.4
3,479,004	-				-0.4
3,479,004	-				-1.7
3,479,004	-				+0.3
3,479,004	-				-0.4
3,479,009	+				-2.7
3,479,009	+				-0.1
3,479,009	+				-1.1
3,479,010	-				-0.9
3,479,010	-				-0.9
3,479,010	-				-1.1
3,479,010	-				-1.7
3,479,011	+				+1.3
3,479,012	-				+0.3
3,479,012	-				-1.8
3,479,012	-				-1.8
3,479,012	-				+0.1
3,479,126	+				-0.4
3,479,127	-				-0.4
3,479,300	+		DDA3937_RS15155	0.16	-1.0
3,479,318	+		DDA3937_RS15155	0.17	-0.7
3,479,318	+		DDA3937_RS15155	0.17	+0.9
3,479,673	-		DDA3937_RS15155	0.41	-1.9
3,479,673	-		DDA3937_RS15155	0.41	-1.4
3,479,673	-		DDA3937_RS15155	0.41	-0.3
3,479,673	-		DDA3937_RS15155	0.41	-0.5
3,479,677	-		DDA3937_RS15155	0.41	+0.7
3,480,170	-		DDA3937_RS15155	0.73	-1.9
3,480,213	+		DDA3937_RS15155	0.76	-0.2
3,480,213	+		DDA3937_RS15155	0.76	-1.4
3,480,349	-		DDA3937_RS15155	0.85	+0.6
3,480,367	+		DDA3937_RS15155	0.86	+0.3
3,480,367	+		DDA3937_RS15155	0.86	-1.0
3,480,367	+		DDA3937_RS15155	0.86	-0.7
3,480,368	-				-1.1
3,480,434	+				+2.2
3,480,628	+				-0.7
3,480,628	+				-0.2
3,480,754	+				-0.6
3,480,809	+				-1.1
3,480,809	+				-2.3
3,480,810	-				-0.2
3,480,815	+				-0.3
3,480,826	+				-1.1
3,480,827	-				-0.0
3,480,870	-				-0.4
3,480,885	-				+0.6
3,480,891	-				-0.9
3,480,891	-				-0.0
3,480,894	-				+1.0
3,481,011	+				-1.9
3,481,011	+				-0.2
3,481,012	-				-0.1
3,481,012	-				+0.9
3,481,049	+				+0.9
3,481,050	-				-0.3
3,481,050	-				-3.0
3,481,050	-				-0.2
3,481,050	-				-0.1
3,481,052	+				+0.6
3,481,063	-				-0.1
3,481,063	-				-1.5
3,481,093	-				-0.4
3,481,138	+				-1.1
3,481,158	-				-0.8
3,481,172	+				-0.4
3,481,172	+				-0.8
3,481,172	+				-0.4
3,481,172	+				-0.3
3,481,172	+				-0.1
3,481,173	-				+0.3
3,481,173	-				-1.0
3,481,173	-				+0.4
3,481,173	-				+0.9
3,481,210	-		DDA3937_RS15160	0.12	-0.4
3,481,210	-		DDA3937_RS15160	0.12	-0.8
3,481,210	-		DDA3937_RS15160	0.12	-1.1
3,481,210	-		DDA3937_RS15160	0.12	+1.2
3,481,289	+		DDA3937_RS15160	0.42	-0.4
3,481,290	-		DDA3937_RS15160	0.42	-2.8
3,481,359	+		DDA3937_RS15160	0.68	+0.2
3,481,359	+		DDA3937_RS15160	0.68	-0.5
3,481,360	-		DDA3937_RS15160	0.68	+0.2
3,481,360	-		DDA3937_RS15160	0.68	+0.1
3,481,382	-		DDA3937_RS15160	0.76	+0.9
3,481,382	-		DDA3937_RS15160	0.76	+0.1
3,481,406	+		DDA3937_RS15160	0.85	-1.4
3,481,407	-		DDA3937_RS15160	0.86	+0.5
3,481,408	+		DDA3937_RS15160	0.86	-0.1
3,481,437	+				-1.3
3,481,437	+				-0.9
3,481,437	+				+1.1
3,481,438	-				-0.5
3,481,560	+		DDA3937_RS15165	0.16	-2.3
3,481,560	+		DDA3937_RS15165	0.16	-0.4
3,481,560	+		DDA3937_RS15165	0.16	-0.3
3,481,560	+		DDA3937_RS15165	0.16	+0.6
3,481,560	+		DDA3937_RS15165	0.16	-0.2
3,481,561	-		DDA3937_RS15165	0.16	+0.1
3,481,561	-		DDA3937_RS15165	0.16	-0.4
3,481,561	-		DDA3937_RS15165	0.16	-0.3