Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14905

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,418,399	+		DDA3937_RS14900	0.34	+0.2
3,418,413	-		DDA3937_RS14900	0.35	-0.3
3,418,413	-		DDA3937_RS14900	0.35	-0.2
3,418,420	+		DDA3937_RS14900	0.36	-0.5
3,418,420	+				+0.9
3,418,451	+		DDA3937_RS14900	0.38	+0.0
3,418,451	+		DDA3937_RS14900	0.38	+0.4
3,418,452	-		DDA3937_RS14900	0.38	-1.3
3,418,452	-		DDA3937_RS14900	0.38	-2.1
3,418,453	+		DDA3937_RS14900	0.38	-0.2
3,418,453	+		DDA3937_RS14900	0.38	-0.2
3,418,454	-		DDA3937_RS14900	0.38	+0.0
3,418,454	-		DDA3937_RS14900	0.38	-1.4
3,418,550	+		DDA3937_RS14900	0.46	-0.1
3,418,550	+		DDA3937_RS14900	0.46	-0.3
3,418,551	-		DDA3937_RS14900	0.46	-0.9
3,418,551	-		DDA3937_RS14900	0.46	-0.6
3,418,551	-		DDA3937_RS14900	0.46	-0.3
3,418,617	-		DDA3937_RS14900	0.51	-0.7
3,418,664	+		DDA3937_RS14900	0.55	-0.5
3,418,665	-		DDA3937_RS14900	0.55	-0.1
3,418,796	+		DDA3937_RS14900	0.65	-0.2
3,418,971	-		DDA3937_RS14900	0.79	+0.4
3,418,986	-		DDA3937_RS14900	0.80	-0.7
3,419,072	+		DDA3937_RS14900	0.87	-0.8
3,419,073	-		DDA3937_RS14900	0.87	-0.3
3,419,110	+				-1.1
3,419,110	+				-0.3
3,419,110	+				+0.6
3,419,111	-				-1.4
3,419,111	-				-0.3
3,419,111	-				+1.3
3,419,135	+				+0.4
3,419,135	+				-1.1
3,419,135	+				-0.1
3,419,136	-				-0.7
3,419,136	-				-1.1
3,419,144	+				-0.2
3,419,144	+				+0.2
3,419,145	-				-0.4
3,419,247	-				-0.7
3,419,249	-				-0.4
3,419,249	-				-0.7
3,419,249	-				-0.3
3,419,255	+				+0.2
3,419,256	-				-0.5
3,419,289	+				-1.0
3,419,290	-				-0.7
3,419,290	-				-0.6
3,419,356	+				-0.1
3,419,362	+				-0.6
3,419,364	+				-2.8
3,419,367	+				-1.7
3,419,368	-				-0.4
3,419,372	-				-0.1
3,419,397	-				-0.4
3,419,397	-				-0.7
3,419,461	+		DDA3937_RS14905	0.20	-1.2
3,419,488	-		DDA3937_RS14905	0.29	-2.7
3,419,491	-		DDA3937_RS14905	0.30	-0.6
3,419,515	+		DDA3937_RS14905	0.37	+0.0
3,419,572	-		DDA3937_RS14905	0.55	+0.1
3,419,592	+				+0.9
3,419,592	+		DDA3937_RS14905	0.62	-0.5
3,419,691	+				-1.1
3,419,692	-				-0.7
3,419,692	-				-1.0
3,419,712	+				-0.1
3,419,712	+				+1.2
3,419,712	+				-0.3
3,419,712	+				+0.1
3,419,713	-				-0.1
3,419,718	+				+0.1
3,419,718	+				+0.9
3,419,718	+				-0.1
3,419,718	+				+1.6
3,419,719	-				-0.6
3,419,719	-				-2.3
3,419,719	-				+0.4
3,419,735	+				-0.5
3,419,736	-				+0.6
3,419,737	+				-0.1
3,419,737	+				-0.3
3,419,738	-				+2.7
3,419,902	+				-1.0
3,419,903	-				-0.1
3,419,950	-				-0.1
3,419,965	+				+0.9
3,419,966	-				+0.5
3,419,966	-				-0.6
3,420,109	-		DDA3937_RS14910	0.14	+0.2
3,420,109	-				+1.2
3,420,178	-		DDA3937_RS14910	0.17	-1.5
3,420,279	-		DDA3937_RS14910	0.22	-0.3
3,420,288	+		DDA3937_RS14910	0.22	-0.1
3,420,288	+		DDA3937_RS14910	0.22	-1.5
3,420,289	-		DDA3937_RS14910	0.23	+0.3
3,420,369	+				-0.7
3,420,405	+		DDA3937_RS14910	0.28	-1.1
3,420,405	+		DDA3937_RS14910	0.28	-2.6
3,420,406	-		DDA3937_RS14910	0.28	-0.9
3,420,406	-		DDA3937_RS14910	0.28	+0.1
3,420,406	-		DDA3937_RS14910	0.28	-0.6
3,420,477	+		DDA3937_RS14910	0.32	-1.1
3,420,477	+		DDA3937_RS14910	0.32	-1.8
3,420,478	-		DDA3937_RS14910	0.32	+0.5
3,420,478	-		DDA3937_RS14910	0.32	-0.7
3,420,478	-		DDA3937_RS14910	0.32	+0.0
3,420,478	-		DDA3937_RS14910	0.32	-1.0
3,420,478	-		DDA3937_RS14910	0.32	-2.6
3,420,478	-		DDA3937_RS14910	0.32	+0.0
3,420,594	+		DDA3937_RS14910	0.37	-0.9