Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14360

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,293,021	+		DDA3937_RS14355	0.56	+0.0
3,293,021	+		DDA3937_RS14355	0.56	-0.4
3,293,258	+				+1.4
3,293,258	+		DDA3937_RS14355	0.68	-0.4
3,293,259	-		DDA3937_RS14355	0.68	-1.2
3,293,259	-		DDA3937_RS14355	0.68	-0.2
3,293,259	-		DDA3937_RS14355	0.68	+0.6
3,293,259	-		DDA3937_RS14355	0.68	+0.8
3,293,260	+		DDA3937_RS14355	0.69	+1.1
3,293,260	+		DDA3937_RS14355	0.69	+0.3
3,293,260	+		DDA3937_RS14355	0.69	-1.4
3,293,260	+		DDA3937_RS14355	0.69	-0.0
3,293,260	+		DDA3937_RS14355	0.69	-0.9
3,293,261	-		DDA3937_RS14355	0.69	-0.5
3,293,261	-		DDA3937_RS14355	0.69	-0.9
3,293,261	-		DDA3937_RS14355	0.69	-0.3
3,293,261	-		DDA3937_RS14355	0.69	+0.4
3,293,486	+		DDA3937_RS14355	0.81	-0.2
3,293,487	-		DDA3937_RS14355	0.81	-0.4
3,293,556	-		DDA3937_RS14355	0.85	-0.4
3,293,556	-		DDA3937_RS14355	0.85	+0.3
3,293,606	-		DDA3937_RS14355	0.87	+0.2
3,293,606	-		DDA3937_RS14355	0.87	-0.5
3,293,623	-		DDA3937_RS14355	0.88	+0.4
3,293,623	-		DDA3937_RS14355	0.88	+0.2
3,293,664	+				-0.4
3,293,664	+				+1.9
3,293,665	-				+1.7
3,293,665	-				+1.3
3,293,665	-				+0.5
3,293,665	-				-1.6
3,293,665	-				+0.1
3,293,701	-				+0.1
3,293,799	+				+0.5
3,293,799	+				-1.0
3,293,863	+				-0.3
3,293,968	+				+1.2
3,293,968	+				-1.7
3,294,051	+		DDA3937_RS14360	0.10	-2.2
3,294,052	-		DDA3937_RS14360	0.10	+0.4
3,294,052	-		DDA3937_RS14360	0.10	-1.2
3,294,052	-		DDA3937_RS14360	0.10	+1.2
3,294,211	+		DDA3937_RS14360	0.34	+0.5
3,294,212	-		DDA3937_RS14360	0.35	+0.8
3,294,408	-		DDA3937_RS14360	0.64	-2.3
3,294,516	-				+1.2
3,294,633	-				-0.2
3,294,633	-				+0.9
3,294,633	-				-0.2
3,294,657	+				-0.4
3,294,657	+				+1.0
3,294,660	+				-0.3
3,294,660	+				-1.7
3,294,661	-				-0.3
3,294,664	+				+0.4
3,294,664	+				+1.0
3,294,664	+				-0.5
3,294,664	+				+2.0
3,294,664	+				+0.3
3,294,664	+				-2.3
3,294,664	+				-1.0
3,294,665	-				-0.1
3,294,665	-				+0.3
3,294,667	+				-0.1
3,294,668	-				+0.5
3,294,698	+				-0.8
3,294,698	+				-0.3
3,294,699	-				+1.0
3,294,699	-				+0.2
3,294,699	-				-2.4
3,294,699	-				+0.0
3,294,701	+				+0.3
3,294,720	-				-1.1
3,294,737	+				-0.0
3,294,737	+				-0.2
3,294,778	+				+1.8
3,294,779	-				-0.7
3,294,824	-				-0.0
3,294,857	+		DDA3937_RS14365	0.16	-0.5
3,294,858	-		DDA3937_RS14365	0.16	-0.8
3,294,858	-		DDA3937_RS14365	0.16	+0.0
3,294,858	-		DDA3937_RS14365	0.16	-0.8
3,294,858	-		DDA3937_RS14365	0.16	+0.2
3,294,865	+		DDA3937_RS14365	0.17	+0.8
3,294,865	+		DDA3937_RS14365	0.17	-0.8
3,294,865	+		DDA3937_RS14365	0.17	-1.1
3,294,865	+		DDA3937_RS14365	0.17	-0.2
3,294,865	+		DDA3937_RS14365	0.17	+0.2
3,294,865	+		DDA3937_RS14365	0.17	-0.7
3,294,866	-		DDA3937_RS14365	0.17	-0.6
3,294,866	-		DDA3937_RS14365	0.17	+1.8
3,294,866	-		DDA3937_RS14365	0.17	-0.2
3,294,866	-		DDA3937_RS14365	0.17	-0.8
3,294,866	-		DDA3937_RS14365	0.17	+0.4
3,294,866	-		DDA3937_RS14365	0.17	-1.7
3,294,866	-		DDA3937_RS14365	0.17	-1.5
3,294,866	-		DDA3937_RS14365	0.17	+0.5
3,294,869	+		DDA3937_RS14365	0.18	-0.8
3,294,870	-		DDA3937_RS14365	0.18	+0.4
3,295,080	-		DDA3937_RS14365	0.61	-0.1
3,295,082	+		DDA3937_RS14365	0.61	+0.3
3,295,083	-		DDA3937_RS14365	0.61	+0.1
3,295,085	+		DDA3937_RS14365	0.62	-0.8
3,295,086	-		DDA3937_RS14365	0.62	+0.8
3,295,157	-		DDA3937_RS14365	0.76	-0.4
3,295,170	-		DDA3937_RS14365	0.79	-0.6
3,295,170	-		DDA3937_RS14365	0.79	-0.5
3,295,247	+				-0.8
3,295,248	-				-0.1
3,295,248	-				+0.3
3,295,248	-				+0.2
3,295,262	+				-0.2
3,295,407	+				-2.0
3,295,408	-				-0.7
3,295,481	+		DDA3937_RS14370	0.15	-0.4
3,295,482	-		DDA3937_RS14370	0.16	-1.0
3,295,482	-		DDA3937_RS14370	0.16	+0.2
3,295,482	-		DDA3937_RS14370	0.16	-0.0
3,295,533	+		DDA3937_RS14370	0.27	-0.8
3,295,558	+		DDA3937_RS14370	0.32	-0.2
3,295,558	+		DDA3937_RS14370	0.32	-0.0
3,295,558	+		DDA3937_RS14370	0.32	-0.5
3,295,559	-		DDA3937_RS14370	0.32	+0.2
3,295,559	-		DDA3937_RS14370	0.32	+0.2
3,295,561	+		DDA3937_RS14370	0.33	-0.0
3,295,562	-		DDA3937_RS14370	0.33	-0.0
3,295,562	-		DDA3937_RS14370	0.33	-0.7