Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13780

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,138,941	+				-0.6
3,138,941	+				-0.1
3,138,975	+				+0.1
3,138,986	-				-0.1
3,139,028	+				-0.2
3,139,029	-				+0.4
3,139,044	-				-0.5
3,139,044	-				+0.3
3,139,105	+		DDA3937_RS23430	0.16	-0.7
3,139,105	+		DDA3937_RS23430	0.16	-0.6
3,139,105	+		DDA3937_RS23430	0.16	+0.9
3,139,106	-		DDA3937_RS23430	0.16	+2.3
3,139,106	-		DDA3937_RS23430	0.16	-0.4
3,139,120	+		DDA3937_RS23430	0.26	-2.1
3,139,120	+		DDA3937_RS23430	0.26	-1.0
3,139,121	-		DDA3937_RS23430	0.27	-0.5
3,139,121	-		DDA3937_RS23430	0.27	+0.3
3,139,121	-		DDA3937_RS23430	0.27	+0.4
3,139,208	-		DDA3937_RS23430	0.86	-0.7
3,139,226	+				+0.4
3,139,226	+				+0.0
3,139,226	+				-0.4
3,139,226	+				-1.1
3,139,227	-				+0.2
3,139,276	-				-0.7
3,139,276	-				+1.2
3,139,276	-				-1.5
3,139,276	-				-0.1
3,139,313	+				-0.7
3,139,389	-		DDA3937_RS13775	0.24	-0.3
3,139,389	-		DDA3937_RS13775	0.24	-0.9
3,139,442	+		DDA3937_RS13775	0.46	-1.6
3,139,442	+		DDA3937_RS13775	0.46	-0.7
3,139,443	-		DDA3937_RS13775	0.46	-0.5
3,139,443	-		DDA3937_RS13775	0.46	+1.6
3,139,443	-		DDA3937_RS13775	0.46	+0.4
3,139,448	+		DDA3937_RS13775	0.48	+1.0
3,139,449	-		DDA3937_RS13775	0.49	-0.7
3,139,449	-		DDA3937_RS13775	0.49	-0.5
3,139,449	-		DDA3937_RS13775	0.49	-1.0
3,139,449	-		DDA3937_RS13775	0.49	-1.5
3,139,449	-		DDA3937_RS13775	0.49	-0.7
3,139,449	-		DDA3937_RS13775	0.49	-0.5
3,139,449	-		DDA3937_RS13775	0.49	-1.7
3,139,582	-				-0.0
3,139,582	-				-0.6
3,139,582	-				+0.7
3,139,602	+				+0.0
3,139,603	-				-1.4
3,139,610	+				+1.2
3,139,618	-				-0.1
3,139,618	-				-0.4
3,139,620	+				+0.6
3,139,621	-				-0.1
3,139,621	-				+0.0
3,139,626	+				-0.3
3,139,700	+				-0.7
3,139,700	+				+0.0
3,139,701	-				+0.1
3,139,701	-				-2.5
3,139,701	-				+1.9
3,139,701	-				-0.6
3,139,701	-				-1.1
3,139,701	-				-0.5
3,139,702	+				-1.3
3,139,702	+				+0.9
3,139,702	+				+0.3
3,139,702	+				+0.6
3,139,702	+				-0.3
3,139,702	+				+0.1
3,139,702	+				+0.2
3,139,702	+				+0.2
3,139,703	-				-0.1
3,139,703	-				-0.3
3,139,703	-				-0.3
3,139,703	-				+0.1
3,139,703	-				-0.7
3,139,703	-				-0.2
3,139,703	-				+1.3
3,139,703	-				-1.1
3,139,703	-				+0.5
3,139,703	-				-1.5
3,139,703	-				-1.1
3,139,703	-				+0.7
3,139,703	-				+1.5
3,139,761	+				+0.2
3,139,762	-				-0.4
3,139,815	+				-0.1
3,139,816	-				-0.6
3,139,816	-				+1.3
3,139,821	-				-0.0
3,139,821	-				+0.9
3,139,821	-				-1.0
3,139,855	+				+0.1
3,139,855	+				-0.7
3,139,906	-				+0.5
3,139,906	-				-0.2
3,139,923	+				-0.4
3,139,924	-				+0.3
3,139,936	+		DDA3937_RS13780	0.11	+1.9
3,139,992	+		DDA3937_RS13780	0.31	-0.4
3,140,077	+		DDA3937_RS13780	0.60	+0.3
3,140,077	+		DDA3937_RS13780	0.60	-0.4
3,140,078	-		DDA3937_RS13780	0.60	+1.2
3,140,089	+		DDA3937_RS13780	0.64	+0.5
3,140,210	+				+0.3
3,140,224	-				+1.0
3,140,224	-				+1.2
3,140,327	+		DDA3937_RS13785	0.12	+0.7
3,140,328	-		DDA3937_RS13785	0.13	+0.1
3,140,334	-		DDA3937_RS13785	0.15	-1.1
3,140,529	-				-0.6
3,140,544	+				-0.6
3,140,596	-				+1.2
3,140,607	-				+1.3
3,140,617	-				+0.4
3,140,617	-				+0.3
3,140,663	-		DDA3937_RS13790	0.10	+1.1
3,140,684	+		DDA3937_RS13790	0.18	+0.5
3,140,684	+		DDA3937_RS13790	0.18	-0.5
3,140,685	-		DDA3937_RS13790	0.19	+0.7
3,140,697	+		DDA3937_RS13790	0.24	-0.1
3,140,697	+		DDA3937_RS13790	0.24	-0.0
3,140,806	-		DDA3937_RS13790	0.67	-0.5
3,140,806	-		DDA3937_RS13790	0.67	+0.4
3,140,869	+				-0.4
3,140,870	-				-0.5
3,140,870	-				+0.3
3,140,871	+				-0.6
3,140,872	-				+0.6
3,140,912	-				-1.5
3,140,929	+				+0.3
3,140,929	+				-0.6
3,140,929	+				+0.9
3,140,930	-				+1.3
3,140,959	+				-0.1
3,141,002	-				-0.3
3,141,002	-				-0.1
3,141,011	-				-0.1
3,141,011	-				+0.3
3,141,146	+				-0.2
3,141,146	+				+0.3
3,141,146	+				-0.3
3,141,146	+				-0.6
3,141,146	+				-0.7
3,141,147	-				-0.1
3,141,147	-				-0.6
3,141,147	-				-0.0
3,141,186	+				-0.5
3,141,186	+				-1.5
3,141,187	-				+0.1
3,141,187	-				+0.9