Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS13235 and DDA3937_RS13240 are separated by 614 nucleotides DDA3937_RS13240 and DDA3937_RS13245 are separated by 145 nucleotides DDA3937_RS13245 and DDA3937_RS13250 are separated by 210 nucleotides
DDA3937_RS13235: DDA3937_RS13235 - hypothetical protein, at 3,021,866 to 3,022,141
_RS13235
DDA3937_RS13240: DDA3937_RS13240 - GhoT/OrtT family toxin, at 3,022,756 to 3,022,941
_RS13240
DDA3937_RS13245: DDA3937_RS13245 - macrodomain Ter protein MatP, at 3,023,087 to 3,023,551
_RS13245
DDA3937_RS13250: DDA3937_RS13250 - Lon protease family protein, at 3,023,762 to 3,025,492
_RS13250
Position (kb)
3022
3023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3021.821 kb on + strand at 3021.821 kb on + strand at 3021.821 kb on + strand at 3021.821 kb on + strand at 3021.821 kb on + strand at 3021.830 kb on + strand at 3021.831 kb on - strand at 3021.831 kb on - strand at 3021.837 kb on - strand at 3021.852 kb on + strand at 3021.852 kb on + strand at 3021.853 kb on - strand at 3021.853 kb on - strand at 3021.853 kb on - strand at 3022.176 kb on + strand at 3022.220 kb on + strand at 3022.222 kb on + strand at 3022.223 kb on - strand at 3022.276 kb on - strand at 3022.276 kb on - strand at 3022.277 kb on + strand at 3022.278 kb on - strand at 3022.278 kb on - strand at 3022.278 kb on - strand at 3022.280 kb on - strand at 3022.280 kb on - strand at 3022.316 kb on + strand at 3022.316 kb on + strand at 3022.317 kb on - strand at 3022.322 kb on + strand at 3022.323 kb on - strand at 3022.334 kb on + strand at 3022.367 kb on - strand at 3022.437 kb on + strand at 3022.486 kb on - strand at 3022.488 kb on + strand at 3022.501 kb on + strand at 3022.501 kb on + strand at 3022.527 kb on + strand at 3022.528 kb on - strand at 3022.547 kb on + strand at 3022.720 kb on + strand at 3022.721 kb on - strand at 3022.743 kb on + strand at 3022.743 kb on + strand at 3022.751 kb on + strand at 3022.751 kb on + strand at 3022.751 kb on + strand at 3022.752 kb on - strand at 3022.752 kb on - strand at 3022.796 kb on - strand, within DDA3937_RS13240 at 3022.823 kb on + strand, within DDA3937_RS13240 at 3022.837 kb on - strand, within DDA3937_RS13240 at 3022.848 kb on + strand, within DDA3937_RS13240 at 3022.849 kb on - strand, within DDA3937_RS13240 at 3022.878 kb on + strand, within DDA3937_RS13240 at 3022.879 kb on - strand, within DDA3937_RS13240 at 3022.879 kb on - strand, within DDA3937_RS13240 at 3022.880 kb on + strand, within DDA3937_RS13240 at 3022.880 kb on + strand, within DDA3937_RS13240 at 3022.881 kb on - strand, within DDA3937_RS13240 at 3022.881 kb on - strand, within DDA3937_RS13240 at 3022.904 kb on + strand, within DDA3937_RS13240 at 3022.943 kb on + strand at 3022.943 kb on + strand at 3022.974 kb on - strand at 3023.045 kb on - strand at 3023.074 kb on + strand at 3023.075 kb on - strand at 3023.075 kb on - strand at 3023.075 kb on - strand at 3023.079 kb on + strand at 3023.079 kb on + strand at 3023.079 kb on + strand at 3023.079 kb on + strand at 3023.080 kb on - strand at 3023.080 kb on - strand at 3023.083 kb on + strand at 3023.083 kb on + strand at 3023.083 kb on + strand at 3023.083 kb on + strand at 3023.083 kb on + strand at 3023.083 kb on + strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.084 kb on - strand at 3023.088 kb on + strand at 3023.157 kb on + strand, within DDA3937_RS13245 at 3023.157 kb on + strand, within DDA3937_RS13245 at 3023.429 kb on + strand at 3023.430 kb on - strand, within DDA3937_RS13245 at 3023.502 kb on + strand, within DDA3937_RS13245 at 3023.503 kb on - strand, within DDA3937_RS13245 at 3023.551 kb on + strand at 3023.663 kb on + strand at 3023.663 kb on + strand at 3023.663 kb on + strand at 3023.663 kb on + strand at 3023.663 kb on + strand at 3023.664 kb on - strand at 3023.664 kb on - strand at 3023.664 kb on - strand at 3023.664 kb on - strand at 3023.664 kb on - strand at 3023.664 kb on - strand at 3023.664 kb on - strand at 3023.700 kb on + strand at 3023.701 kb on - strand at 3023.722 kb on + strand at 3023.722 kb on + strand at 3023.723 kb on - strand at 3023.724 kb on + strand at 3023.724 kb on + strand at 3023.725 kb on - strand at 3023.742 kb on - strand at 3023.758 kb on + strand at 3023.759 kb on - strand at 3023.759 kb on - strand at 3023.759 kb on - strand at 3023.759 kb on - strand at 3023.759 kb on - strand at 3023.759 kb on - strand at 3023.806 kb on + strand at 3023.807 kb on - strand at 3023.807 kb on - strand at 3023.823 kb on + strand at 3023.824 kb on - strand at 3023.935 kb on - strand, within DDA3937_RS13250
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,021,821 + +1.8 3,021,821 + +0.2 3,021,821 + -0.7 3,021,821 + +0.0 3,021,821 + +0.5 3,021,830 + +0.8 3,021,831 - +0.1 3,021,831 - -0.4 3,021,837 - -0.8 3,021,852 + -1.2 3,021,852 + +0.8 3,021,853 - -0.4 3,021,853 - +0.2 3,021,853 - -1.0 3,022,176 + -0.2 3,022,220 + -0.6 3,022,222 + -1.2 3,022,223 - +0.4 3,022,276 - +0.2 3,022,276 - -0.9 3,022,277 + -1.8 3,022,278 - +0.8 3,022,278 - -0.4 3,022,278 - -0.1 3,022,280 - -0.8 3,022,280 - -0.4 3,022,316 + -0.9 3,022,316 + -1.2 3,022,317 - -0.8 3,022,322 + -0.4 3,022,323 - -0.2 3,022,334 + -1.5 3,022,367 - +0.2 3,022,437 + +0.1 3,022,486 - -0.9 3,022,488 + -0.6 3,022,501 + -0.2 3,022,501 + -0.1 3,022,527 + -0.2 3,022,528 - -0.2 3,022,547 + -0.7 3,022,720 + +1.6 3,022,721 - -0.8 3,022,743 + -1.0 3,022,743 + -1.9 3,022,751 + -0.6 3,022,751 + -0.7 3,022,751 + +0.1 3,022,752 - -1.8 3,022,752 - -0.8 3,022,796 - DDA3937_RS13240 0.22 -0.9 3,022,823 + DDA3937_RS13240 0.36 -0.2 3,022,837 - DDA3937_RS13240 0.44 -1.5 3,022,848 + DDA3937_RS13240 0.49 +1.1 3,022,849 - DDA3937_RS13240 0.50 -1.2 3,022,878 + DDA3937_RS13240 0.66 +0.2 3,022,879 - DDA3937_RS13240 0.66 -0.5 3,022,879 - DDA3937_RS13240 0.66 -0.5 3,022,880 + DDA3937_RS13240 0.67 -1.0 3,022,880 + DDA3937_RS13240 0.67 +0.3 3,022,881 - DDA3937_RS13240 0.67 +0.3 3,022,881 - DDA3937_RS13240 0.67 -1.5 3,022,904 + DDA3937_RS13240 0.80 -1.8 3,022,943 + +1.0 3,022,943 + -0.8 3,022,974 - +0.8 3,023,045 - -0.2 3,023,074 + -0.7 3,023,075 - -1.2 3,023,075 - +0.6 3,023,075 - -0.6 3,023,079 + +0.3 3,023,079 + -0.4 3,023,079 + +0.3 3,023,079 + -0.4 3,023,080 - +1.6 3,023,080 - +0.2 3,023,083 + +0.1 3,023,083 + +0.2 3,023,083 + -0.2 3,023,083 + +0.2 3,023,083 + +0.5 3,023,083 + +1.2 3,023,084 - -0.3 3,023,084 - -0.8 3,023,084 - -0.7 3,023,084 - -0.6 3,023,084 - +0.2 3,023,084 - +1.1 3,023,084 - -0.2 3,023,084 - -0.5 3,023,088 + -0.5 3,023,157 + DDA3937_RS13245 0.15 -0.5 3,023,157 + DDA3937_RS13245 0.15 +0.3 3,023,429 + +0.4 3,023,430 - DDA3937_RS13245 0.74 -1.1 3,023,502 + DDA3937_RS13245 0.89 -1.2 3,023,503 - DDA3937_RS13245 0.89 +0.1 3,023,551 + -2.4 3,023,663 + +0.2 3,023,663 + -0.5 3,023,663 + -0.2 3,023,663 + +0.1 3,023,663 + +0.2 3,023,664 - +0.6 3,023,664 - -0.4 3,023,664 - +0.4 3,023,664 - +0.4 3,023,664 - +0.3 3,023,664 - -0.5 3,023,664 - -0.7 3,023,700 + -0.4 3,023,701 - -1.0 3,023,722 + -0.3 3,023,722 + +0.2 3,023,723 - -0.7 3,023,724 + +0.2 3,023,724 + -1.2 3,023,725 - -1.1 3,023,742 - +0.2 3,023,758 + +0.1 3,023,759 - -1.6 3,023,759 - -0.4 3,023,759 - +0.4 3,023,759 - -0.2 3,023,759 - -0.3 3,023,759 - -1.0 3,023,806 + -2.4 3,023,807 - +1.2 3,023,807 - -1.0 3,023,823 + +0.2 3,023,824 - -0.3 3,023,935 - DDA3937_RS13250 0.10 +0.0
Or see this region's nucleotide sequence