Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13165

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,003,036	+				+1.8
3,003,036	+		DDA3937_RS13160	0.87	+1.6
3,003,036	+		DDA3937_RS13160	0.87	-1.3
3,003,037	-		DDA3937_RS13160	0.87	-1.8
3,003,287	-				+0.5
3,003,325	+				-0.6
3,003,326	-				-2.0
3,003,326	-				-0.2
3,003,454	+				+0.8
3,003,454	+				+0.7
3,003,454	+				+0.3
3,003,454	+				-0.4
3,003,454	+				-0.5
3,003,454	+				+0.2
3,003,455	-				+0.1
3,003,455	-				-2.0
3,003,455	-				-0.2
3,003,457	+				-2.2
3,003,457	+				-0.8
3,003,458	-				-0.3
3,003,458	-				+0.3
3,003,458	-				-0.2
3,003,459	+				-1.9
3,003,489	+				+1.8
3,003,490	-				-0.3
3,003,499	-				+0.6
3,003,499	-				+1.0
3,003,702	-		DDA3937_RS13165	0.60	-0.8
3,003,702	-		DDA3937_RS13165	0.60	+0.6
3,003,702	-		DDA3937_RS13165	0.60	-1.0
3,003,702	-		DDA3937_RS13165	0.60	-0.8
3,003,702	-		DDA3937_RS13165	0.60	-0.5
3,003,706	+		DDA3937_RS13165	0.61	+0.2
3,003,706	+		DDA3937_RS13165	0.61	-0.5
3,003,768	+		DDA3937_RS13165	0.83	-0.6
3,003,783	+		DDA3937_RS13165	0.88	-0.9
3,003,783	+		DDA3937_RS13165	0.88	-1.3
3,003,784	-		DDA3937_RS13165	0.89	+0.1
3,003,819	+				-0.8
3,003,819	+				+1.1
3,003,820	-				-0.4
3,003,820	-				+0.1
3,003,820	-				+0.8
3,003,822	+				-1.8
3,003,822	+				-1.2
3,003,822	+				-1.8
3,003,823	-				-0.6
3,003,823	-				+2.0
3,003,833	+				-0.7
3,003,834	-				+0.6
3,003,835	+				-1.8
3,003,835	+				-1.0
3,003,835	+				-0.2
3,003,836	-				-0.6
3,003,836	-				-0.2
3,003,836	-				-0.5
3,003,858	+				-0.2
3,003,859	-				+1.7
3,003,859	-				-1.2
3,003,861	-				-2.0
3,003,916	+				-0.2
3,003,930	-				+0.0
3,003,930	-				-0.2
3,003,935	+				+1.6
3,003,936	-				+0.1
3,003,936	-				+1.2
3,003,948	-				-1.1
3,003,971	+				-0.9
3,003,972	-				-1.6
3,003,972	-				-1.2
3,003,972	-				+2.4
3,004,082	+				+0.3
3,004,082	+				+0.0
3,004,082	+				+1.2
3,004,083	-				-0.3
3,004,083	-				+0.6
3,004,083	-				+0.3
3,004,083	-				-0.1
3,004,083	-				+1.2
3,004,083	-				-1.2
3,004,083	-				+0.6
3,004,085	+				-0.3
3,004,086	-				-0.1
3,004,090	+				+0.6
3,004,091	-				+0.4
3,004,091	-				-1.0
3,004,093	-				+0.1
3,004,093	-				+0.4
3,004,143	+		DDA3937_RS13170	0.14	+0.3
3,004,143	+		DDA3937_RS13170	0.14	-1.9
3,004,143	+		DDA3937_RS13170	0.14	-0.4
3,004,234	+		DDA3937_RS13170	0.23	-0.8
3,004,266	+		DDA3937_RS13170	0.26	-0.2
3,004,267	-		DDA3937_RS13170	0.26	+0.6
3,004,290	-		DDA3937_RS13170	0.28	+0.1
3,004,290	-		DDA3937_RS13170	0.28	-1.4
3,004,363	-		DDA3937_RS13170	0.35	-0.0
3,004,363	-		DDA3937_RS13170	0.35	-1.2
3,004,363	-		DDA3937_RS13170	0.35	-0.2
3,004,366	+		DDA3937_RS13170	0.35	-0.4
3,004,367	-		DDA3937_RS13170	0.35	-1.2
3,004,533	+		DDA3937_RS13170	0.51	-2.9
3,004,534	-		DDA3937_RS13170	0.51	+0.6
3,004,534	-		DDA3937_RS13170	0.51	+0.8
3,004,534	-		DDA3937_RS13170	0.51	-0.8
3,004,555	+		DDA3937_RS13170	0.53	-2.2
3,004,555	+		DDA3937_RS13170	0.53	-0.7
3,004,555	+				+1.8
3,004,556	-		DDA3937_RS13170	0.54	-1.5
3,004,556	-		DDA3937_RS13170	0.54	+0.1
3,004,556	-		DDA3937_RS13170	0.54	+0.1
3,004,556	-		DDA3937_RS13170	0.54	+0.0
3,004,556	-		DDA3937_RS13170	0.54	+0.5
3,004,683	+		DDA3937_RS13170	0.66	+1.2