Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12510

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,848,432	+		DDA3937_RS12505	0.61	+0.3
2,848,432	+		DDA3937_RS12505	0.61	-0.6
2,848,432	+		DDA3937_RS12505	0.61	-2.1
2,848,432	+		DDA3937_RS12505	0.61	-0.9
2,848,597	-		DDA3937_RS12505	0.77	-0.7
2,848,614	-		DDA3937_RS12505	0.79	-0.3
2,848,658	+		DDA3937_RS12505	0.83	-0.4
2,848,659	-		DDA3937_RS12505	0.83	+0.5
2,848,712	+		DDA3937_RS12505	0.88	-0.0
2,848,713	-		DDA3937_RS12505	0.88	+0.5
2,848,726	+		DDA3937_RS12505	0.90	-0.1
2,848,751	+				-1.3
2,848,752	-				-0.8
2,848,811	+				-1.3
2,848,823	+				+0.1
2,848,824	-				-0.0
2,848,824	-				-0.6
2,848,824	-				-0.3
2,848,829	+				-1.1
2,848,829	+				+0.4
2,848,829	+				-0.7
2,848,830	-				+1.7
2,848,830	-				+0.5
2,848,830	-				+0.7
2,848,830	-				+0.7
2,848,830	-				+0.4
2,849,031	-				-0.6
2,849,031	-				+0.7
2,849,031	-				-1.0
2,849,166	+				-0.5
2,849,172	+				-0.4
2,849,172	+				-0.1
2,849,173	-				-0.2
2,849,173	-				-0.9
2,849,173	-				-0.3
2,849,173	-				-1.3
2,849,173	-				-1.3
2,849,173	-				-0.8
2,849,173	-				-0.3
2,849,223	+				+0.2
2,849,224	-				-0.1
2,849,226	+				+0.2
2,849,236	+				-0.0
2,849,253	+				+0.2
2,849,254	-				-0.3
2,849,254	-				-0.7
2,849,301	-		DDA3937_RS12510	0.13	+0.1
2,849,325	+		DDA3937_RS12510	0.16	-1.3
2,849,326	-		DDA3937_RS12510	0.16	-0.7
2,849,326	-		DDA3937_RS12510	0.16	+0.1
2,849,366	-		DDA3937_RS12510	0.22	-0.1
2,849,366	-				-1.3
2,849,577	-		DDA3937_RS12510	0.52	+0.1
2,849,658	+		DDA3937_RS12510	0.64	+1.1
2,849,658	+		DDA3937_RS12510	0.64	-0.6
2,849,659	-		DDA3937_RS12510	0.64	-0.0
2,849,736	-		DDA3937_RS12510	0.75	+0.3
2,849,766	+		DDA3937_RS12510	0.79	-0.5
2,849,767	-		DDA3937_RS12510	0.80	-0.6
2,849,767	-		DDA3937_RS12510	0.80	-0.9
2,849,767	-		DDA3937_RS12510	0.80	+0.9
2,849,935	+				-2.5
2,849,936	-				-1.5
2,849,964	-				+1.0
2,849,964	-				-0.3
2,849,964	-				-0.3
2,850,078	-				-1.0
2,850,111	-				-0.7
2,850,114	+				+1.3
2,850,114	+				-1.0
2,850,114	+				-0.6
2,850,114	+				+0.4
2,850,114	+				-0.2
2,850,114	+				+0.7
2,850,115	-				-0.6
2,850,115	-				-0.5
2,850,115	-				-1.1
2,850,115	-				-0.7
2,850,115	-				-0.6
2,850,117	-				-0.9
2,850,131	-				+0.5
2,850,159	-				-0.2
2,850,278	-		DDA3937_RS12515	0.18	-1.2
2,850,278	-		DDA3937_RS12515	0.18	+0.1
2,850,285	+		DDA3937_RS12515	0.21	+1.3
2,850,285	+		DDA3937_RS12515	0.21	+0.1
2,850,285	+		DDA3937_RS12515	0.21	+0.2
2,850,286	-		DDA3937_RS12515	0.22	-0.3
2,850,286	-		DDA3937_RS12515	0.22	-0.6
2,850,286	-		DDA3937_RS12515	0.22	+0.7
2,850,286	-		DDA3937_RS12515	0.22	-1.6
2,850,286	-		DDA3937_RS12515	0.22	-1.7
2,850,286	-		DDA3937_RS12515	0.22	-2.1
2,850,289	+		DDA3937_RS12515	0.23	+0.2
2,850,289	+		DDA3937_RS12515	0.23	-1.4
2,850,289	+		DDA3937_RS12515	0.23	-1.9
2,850,290	-		DDA3937_RS12515	0.24	-0.9
2,850,331	+		DDA3937_RS12515	0.43	+0.6
2,850,331	+		DDA3937_RS12515	0.43	+0.3
2,850,331	+		DDA3937_RS12515	0.43	+0.1
2,850,332	-		DDA3937_RS12515	0.43	-0.3
2,850,332	-		DDA3937_RS12515	0.43	+0.0
2,850,332	-		DDA3937_RS12515	0.43	-1.2
2,850,332	-		DDA3937_RS12515	0.43	-1.9
2,850,332	-		DDA3937_RS12515	0.43	-1.1
2,850,332	-		DDA3937_RS12515	0.43	+1.7
2,850,334	+		DDA3937_RS12515	0.44	-1.6
2,850,334	+		DDA3937_RS12515	0.44	+0.4
2,850,554	+				+0.2
2,850,556	+				-0.6
2,850,556	+				-1.0
2,850,557	-				-0.9
2,850,557	-				-0.1
2,850,557	-				+0.1
2,850,557	-				+1.4
2,850,557	-				-0.3
2,850,562	-				+0.6
2,850,562	-				-0.1
2,850,788	+		DDA3937_RS12520	0.70	+0.2
2,850,788	+		DDA3937_RS12520	0.70	-0.2
2,850,789	-		DDA3937_RS12520	0.70	-0.3
2,850,789	-		DDA3937_RS12520	0.70	+0.7
2,850,793	+		DDA3937_RS12520	0.71	-1.5
2,850,794	-		DDA3937_RS12520	0.72	+0.8
2,850,794	-		DDA3937_RS12520	0.72	+0.3
2,850,838	+		DDA3937_RS12520	0.85	-1.5
2,850,838	+		DDA3937_RS12520	0.85	-1.1
2,850,838	+				+1.7
2,850,838	+		DDA3937_RS12520	0.85	-0.4
2,850,839	-		DDA3937_RS12520	0.85	+0.1
2,850,839	-		DDA3937_RS12520	0.85	-0.2
2,850,858	+				-0.5
2,850,858	+				+0.7
2,850,858	+				-1.6
2,850,858	+				-0.7
2,850,859	-				-0.9