Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12425

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,827,082	+		DDA3937_RS12410	0.90	-0.3
2,827,102	+				+0.6
2,827,103	-				-0.1
2,827,105	+				-0.7
2,827,105	+				-0.3
2,827,105	+				+0.6
2,827,105	+				+0.1
2,827,106	-				-2.3
2,827,117	+				+0.4
2,827,117	+				+0.7
2,827,269	-				-0.5
2,827,269	-				-0.9
2,827,269	-				-1.0
2,827,365	+				+0.7
2,827,384	+				-0.6
2,827,384	+				-0.1
2,827,385	-				+0.1
2,827,386	+				-2.3
2,827,386	+				-0.5
2,827,386	+				-0.6
2,827,386	+				+0.5
2,827,387	-				+1.4
2,827,387	-				-0.7
2,827,414	+				-0.6
2,827,414	+				-1.6
2,827,414	+				-0.1
2,827,414	+				-0.9
2,827,415	-				+0.2
2,827,415	-				-1.5
2,827,415	-				-1.4
2,827,415	-				+0.1
2,827,430	+		DDA3937_RS12415	0.13	+0.3
2,827,431	-		DDA3937_RS12415	0.13	+2.3
2,827,432	+		DDA3937_RS12415	0.14	+0.6
2,827,432	+		DDA3937_RS12415	0.14	-0.2
2,827,432	+				+2.5
2,827,433	-		DDA3937_RS12415	0.14	-0.1
2,827,433	-		DDA3937_RS12415	0.14	+0.5
2,827,433	-		DDA3937_RS12415	0.14	-0.1
2,827,433	-		DDA3937_RS12415	0.14	+0.7
2,827,433	-		DDA3937_RS12415	0.14	-0.8
2,827,445	+		DDA3937_RS12415	0.17	-0.1
2,827,445	+		DDA3937_RS12415	0.17	-3.1
2,827,532	-		DDA3937_RS12415	0.41	+0.3
2,827,532	-		DDA3937_RS12415	0.41	+0.7
2,827,576	+		DDA3937_RS12415	0.54	-0.4
2,827,576	+		DDA3937_RS12415	0.54	-0.5
2,827,576	+		DDA3937_RS12415	0.54	+1.6
2,827,577	-		DDA3937_RS12415	0.54	+0.5
2,827,577	-		DDA3937_RS12415	0.54	-1.0
2,827,577	-		DDA3937_RS12415	0.54	-0.6
2,827,631	+		DDA3937_RS12415	0.69	-0.6
2,827,632	-		DDA3937_RS12415	0.69	+0.1
2,827,632	-		DDA3937_RS12415	0.69	+0.3
2,827,644	+		DDA3937_RS12415	0.72	+0.1
2,827,660	+		DDA3937_RS12415	0.77	+0.1
2,827,810	+		DDA3937_RS12420	0.29	+0.2
2,827,810	+		DDA3937_RS12420	0.29	-1.3
2,827,811	-		DDA3937_RS12420	0.30	-0.8
2,827,811	-		DDA3937_RS12420	0.30	-0.9
2,827,893	+		DDA3937_RS12420	0.65	+0.5
2,827,894	-		DDA3937_RS12420	0.66	-0.8
2,827,894	-		DDA3937_RS12420	0.66	+0.1
2,827,988	-				-0.1
2,827,988	-				-0.2
2,827,990	+				-1.6
2,828,131	+		DDA3937_RS12425	0.14	-0.8
2,828,131	+		DDA3937_RS12425	0.14	-0.3
2,828,131	+		DDA3937_RS12425	0.14	-0.9
2,828,659	+				+0.7
2,828,706	+				+0.3
2,828,747	+				+0.3
2,828,747	+				-1.1
2,828,748	-				-0.3
2,828,748	-				+1.0
2,828,781	+				-0.3
2,828,886	+				+0.7
2,828,886	+				+0.1
2,828,891	-				-0.7
2,828,908	-				-0.1
2,828,914	+				-0.4
2,828,914	+				-0.5
2,828,914	+				+0.5
2,829,071	+		DDA3937_RS12430	0.15	-1.3
2,829,071	+		DDA3937_RS12430	0.15	-0.0
2,829,071	+		DDA3937_RS12430	0.15	+0.3
2,829,072	-		DDA3937_RS12430	0.15	-0.1
2,829,296	+		DDA3937_RS12430	0.38	-0.5
2,829,334	-		DDA3937_RS12430	0.41	+0.2
2,829,579	-		DDA3937_RS12430	0.66	-0.2