Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10125

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,281,445	-		DDA3937_RS10115	0.42	+0.2
2,281,445	-		DDA3937_RS10115	0.42	-0.2
2,281,507	+		DDA3937_RS10115	0.58	+0.3
2,281,507	+		DDA3937_RS10115	0.58	-0.6
2,281,507	+		DDA3937_RS10115	0.58	-0.2
2,281,507	+		DDA3937_RS10115	0.58	+0.2
2,281,508	-		DDA3937_RS10115	0.58	-1.0
2,281,508	-		DDA3937_RS10115	0.58	+0.6
2,281,654	+				-0.9
2,281,705	+				+0.1
2,281,705	+				-0.2
2,281,711	-				-1.7
2,281,711	-				-1.4
2,281,741	+				+0.1
2,281,744	+				-0.2
2,281,744	+				+1.1
2,281,756	-				-0.0
2,281,797	-				-0.5
2,281,889	+				-0.4
2,281,890	-				+0.3
2,281,977	+		DDA3937_RS10120	0.26	-0.4
2,281,977	+		DDA3937_RS10120	0.26	+0.1
2,281,977	+		DDA3937_RS10120	0.26	-1.2
2,281,978	-		DDA3937_RS10120	0.26	-0.6
2,282,012	+		DDA3937_RS10120	0.34	+0.3
2,282,012	+		DDA3937_RS10120	0.34	+0.2
2,282,036	-		DDA3937_RS10120	0.40	+0.2
2,282,084	-		DDA3937_RS10120	0.52	+0.1
2,282,110	+		DDA3937_RS10120	0.59	+0.4
2,282,111	-		DDA3937_RS10120	0.59	-1.7
2,282,111	-		DDA3937_RS10120	0.59	-0.5
2,282,155	+		DDA3937_RS10120	0.70	-0.7
2,282,157	+		DDA3937_RS10120	0.70	+0.2
2,282,157	+				+2.2
2,282,158	-		DDA3937_RS10120	0.70	+0.3
2,282,217	+		DDA3937_RS10120	0.85	-0.1
2,282,217	+		DDA3937_RS10120	0.85	+1.6
2,282,217	+		DDA3937_RS10120	0.85	+0.1
2,282,217	+		DDA3937_RS10120	0.85	+0.3
2,282,218	-		DDA3937_RS10120	0.85	+0.6
2,282,218	-		DDA3937_RS10120	0.85	+2.3
2,282,218	-		DDA3937_RS10120	0.85	-0.2
2,282,248	-				-0.6
2,282,269	-				+0.3
2,282,275	+				-0.9
2,282,297	+				+1.7
2,282,322	+				-0.4
2,282,322	+				+0.7
2,282,322	+				-1.1
2,282,402	-				+0.2
2,282,402	-				-0.7
2,282,407	+				-3.4
2,282,407	+				-0.1
2,282,408	-				+0.5
2,282,408	-				-0.4
2,282,408	-				-1.4
2,282,414	+				+0.9
2,282,415	-				-0.9
2,282,447	+				+0.0
2,282,473	-				-0.7
2,282,572	+		DDA3937_RS10125	0.10	-0.2
2,282,572	+		DDA3937_RS10125	0.10	+0.6
2,282,573	-		DDA3937_RS10125	0.11	+0.1
2,282,573	-		DDA3937_RS10125	0.11	-1.2
2,282,627	+		DDA3937_RS10125	0.14	-0.7
2,282,752	+		DDA3937_RS10125	0.23	-1.7
2,282,752	+		DDA3937_RS10125	0.23	-0.7
2,282,818	-		DDA3937_RS10125	0.28	-1.9
2,283,025	-		DDA3937_RS10125	0.42	-2.5
2,283,248	-		DDA3937_RS10125	0.57	-1.1
2,283,561	-		DDA3937_RS10125	0.79	-0.8
2,283,561	-		DDA3937_RS10125	0.79	-0.3
2,283,665	+		DDA3937_RS10125	0.86	-0.7
2,283,762	+				-0.6
2,283,762	+				-1.2
2,283,762	+				-0.4
2,283,763	-				-0.2
2,283,797	+				-2.2
2,283,865	+				-2.4
2,283,865	+				-1.2
2,283,865	+				+0.6
2,283,866	-				+0.3
2,283,866	-				-0.7
2,283,866	-				-0.7
2,283,866	-				-0.4
2,283,866	-				-0.2
2,283,867	+				+1.0
2,283,867	+				+2.2
2,283,867	+				-1.4
2,283,868	-				+0.2
2,283,895	+				-1.0
2,283,895	+				-0.2
2,283,895	+				+0.5
2,283,896	-				-0.3
2,283,896	-				-0.1
2,283,896	-				+0.6
2,283,896	-				+0.2
2,283,896	-				+0.5
2,283,930	-				+0.2
2,283,974	-				+1.0
2,283,977	+				-1.0
2,283,978	-				+0.1
2,283,978	-				-0.6
2,284,033	-				+0.1
2,284,033	-				+0.6
2,284,034	+				-2.1
2,284,034	+				+1.6
2,284,034	+				+0.2
2,284,035	-				-0.2
2,284,035	-				-0.1
2,284,035	-				-0.9
2,284,035	-				-0.3
2,284,039	+				+0.5
2,284,039	+				-0.6
2,284,040	-				-0.5
2,284,040	-				-0.4
2,284,040	-				-2.5
2,284,043	+				-0.7
2,284,043	+				-0.9
2,284,044	-				-0.4
2,284,120	-				+0.1
2,284,163	-		DDA3937_RS10130	0.14	-1.2
2,284,181	-		DDA3937_RS10130	0.16	-0.4
2,284,209	+		DDA3937_RS10130	0.19	-0.3
2,284,210	-		DDA3937_RS10130	0.19	-0.3
2,284,210	-		DDA3937_RS10130	0.19	-0.9
2,284,211	+		DDA3937_RS10130	0.19	-0.0
2,284,211	+		DDA3937_RS10130	0.19	+1.2
2,284,212	-		DDA3937_RS10130	0.20	+1.2
2,284,212	-		DDA3937_RS10130	0.20	-0.1
2,284,212	-		DDA3937_RS10130	0.20	+0.6
2,284,212	-		DDA3937_RS10130	0.20	+0.6
2,284,212	-		DDA3937_RS10130	0.20	+0.2
2,284,212	-		DDA3937_RS10130	0.20	+0.8
2,284,221	+		DDA3937_RS10130	0.21	-1.4
2,284,248	+		DDA3937_RS10130	0.24	+0.5
2,284,287	+		DDA3937_RS10130	0.28	-0.7
2,284,288	-				-1.9
2,284,288	-		DDA3937_RS10130	0.28	-0.4
2,284,288	-		DDA3937_RS10130	0.28	-1.1
2,284,290	+		DDA3937_RS10130	0.29	+0.6
2,284,290	+		DDA3937_RS10130	0.29	-1.7
2,284,376	-		DDA3937_RS10130	0.38	-1.4
2,284,376	-		DDA3937_RS10130	0.38	-1.3
2,284,376	-		DDA3937_RS10130	0.38	+1.1
2,284,437	-		DDA3937_RS10130	0.45	+1.1
2,284,449	+		DDA3937_RS10130	0.47	+1.4
2,284,450	-		DDA3937_RS10130	0.47	+0.3
2,284,560	+		DDA3937_RS10130	0.60	-1.4
2,284,631	+		DDA3937_RS10130	0.68	-0.5
2,284,632	-		DDA3937_RS10130	0.68	-0.2
2,284,673	+		DDA3937_RS10130	0.73	+1.1
2,284,673	+		DDA3937_RS10130	0.73	+1.0
2,284,673	+		DDA3937_RS10130	0.73	+0.4
2,284,674	-		DDA3937_RS10130	0.73	-0.7
2,284,674	-		DDA3937_RS10130	0.73	+0.3
2,284,674	-		DDA3937_RS10130	0.73	+0.6