Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09115

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,047,137	-		DDA3937_RS09105	0.47	-1.9
2,047,242	+		DDA3937_RS09105	0.56	-0.3
2,047,242	+				+0.7
2,047,342	+		DDA3937_RS09105	0.64	-0.9
2,047,354	+				-1.6
2,047,355	-		DDA3937_RS09105	0.65	-0.2
2,047,355	-		DDA3937_RS09105	0.65	-1.0
2,047,405	+		DDA3937_RS09105	0.69	-0.0
2,047,453	-		DDA3937_RS09105	0.73	-0.2
2,047,551	-		DDA3937_RS09105	0.80	-0.1
2,047,656	+		DDA3937_RS09105	0.89	+0.7
2,047,656	+		DDA3937_RS09105	0.89	-0.3
2,047,656	+		DDA3937_RS09105	0.89	+0.4
2,047,656	+		DDA3937_RS09105	0.89	-0.4
2,047,657	-		DDA3937_RS09105	0.89	-1.3
2,047,660	+		DDA3937_RS09105	0.89	-1.0
2,047,660	+		DDA3937_RS09105	0.89	-0.5
2,047,661	-		DDA3937_RS09105	0.89	-1.1
2,047,701	+				-0.7
2,047,702	-				+0.1
2,047,702	-				-0.3
2,047,702	-				+0.4
2,047,702	-				-0.8
2,047,721	+				+0.1
2,047,722	-				-0.2
2,047,728	+				+0.0
2,047,728	+				+0.6
2,047,780	+				-0.0
2,047,781	-				-0.0
2,047,784	+				+0.5
2,047,784	+				+0.8
2,047,784	+				-0.7
2,047,785	-				-0.7
2,047,786	+				+0.5
2,047,786	+				-0.0
2,047,786	+				+0.8
2,047,787	-				-0.5
2,047,787	-				-0.6
2,047,798	+				-0.6
2,047,798	+				-2.5
2,047,799	-				-0.0
2,047,799	-				-0.3
2,047,818	+				-0.8
2,047,818	+				-0.3
2,047,818	+				-0.4
2,047,818	+				-1.9
2,047,819	-				-0.1
2,047,819	-				-0.6
2,047,819	-				-0.3
2,047,819	-				+0.0
2,047,819	-				+0.5
2,047,819	-				+1.1
2,047,819	-				-2.3
2,047,819	-				-0.9
2,047,820	+				-0.9
2,047,830	+				+0.0
2,047,844	+				-0.4
2,047,849	-				-0.2
2,047,885	-				-0.1
2,048,065	-				+0.7
2,048,065	-				+0.7
2,048,067	-				-1.2
2,048,116	-				+0.4
2,048,122	-				-0.7
2,048,129	+				-0.5
2,048,130	-				-1.3
2,048,140	-				+0.5
2,048,161	+				+0.2
2,048,161	+				-0.2
2,048,167	+				-2.3
2,048,168	-				-1.5
2,048,223	-				+0.1
2,048,231	+				+0.7
2,048,232	-				+0.1
2,048,256	+				-1.0
2,048,256	+				-2.3
2,048,256	+				-0.9
2,048,464	+		DDA3937_RS09115	0.19	+0.8
2,048,465	-		DDA3937_RS09115	0.19	+0.3
2,048,465	-		DDA3937_RS09115	0.19	-0.8
2,048,465	-		DDA3937_RS09115	0.19	-1.0
2,048,465	-		DDA3937_RS09115	0.19	-0.3
2,048,467	+		DDA3937_RS09115	0.19	-2.3
2,048,550	+		DDA3937_RS09115	0.24	-0.3
2,048,550	+		DDA3937_RS09115	0.24	+0.7
2,048,551	-		DDA3937_RS09115	0.24	-1.2
2,048,551	-		DDA3937_RS09115	0.24	-1.3
2,048,745	+		DDA3937_RS09115	0.35	-2.7
2,048,745	+		DDA3937_RS09115	0.35	-0.6
2,048,749	-		DDA3937_RS09115	0.35	-2.5
2,048,749	-				+1.7
2,048,752	-		DDA3937_RS09115	0.35	-1.9
2,048,954	+		DDA3937_RS09115	0.47	-2.4
2,048,954	+		DDA3937_RS09115	0.47	-1.9
2,048,954	+		DDA3937_RS09115	0.47	-1.5
2,048,954	+		DDA3937_RS09115	0.47	-1.6
2,048,955	-		DDA3937_RS09115	0.47	-1.9
2,048,955	-		DDA3937_RS09115	0.47	-0.9
2,048,955	-		DDA3937_RS09115	0.47	-2.1
2,048,955	-		DDA3937_RS09115	0.47	-0.9
2,048,955	-		DDA3937_RS09115	0.47	-1.3
2,048,955	-		DDA3937_RS09115	0.47	-2.5
2,049,034	+		DDA3937_RS09115	0.51	-3.8
2,049,034	+		DDA3937_RS09115	0.51	-0.9
2,049,035	-		DDA3937_RS09115	0.51	-0.3
2,049,125	+		DDA3937_RS09115	0.56	-1.0
2,049,218	+				+1.7
2,049,219	-				-1.3
2,049,995	-		DDA3937_RS09120	0.35	-1.5
2,050,007	-		DDA3937_RS09120	0.40	-0.2
2,050,178	-				-0.9
2,050,178	-				-0.0
2,050,178	-				+0.1
2,050,178	-				-0.0
2,050,178	-				-0.4
2,050,178	-				-1.2
2,050,180	-				-0.3
2,050,180	-				-0.8
2,050,180	-				+0.2
2,050,180	-				+0.4
2,050,189	+				+2.0
2,050,189	+				-0.1
2,050,189	+				+0.1
2,050,190	-				+1.4
2,050,214	-				+0.3
2,050,277	+				+1.0
2,050,286	+				+0.8
2,050,286	+				+1.0
2,050,289	+				-0.2
2,050,289	+				-0.0
2,050,289	+				-0.6
2,050,289	+				-1.5
2,050,290	-				+0.3
2,050,302	+				+0.7
2,050,419	+		DDA3937_RS09125	0.11	-0.6
2,050,419	+		DDA3937_RS09125	0.11	+0.4
2,050,420	-		DDA3937_RS09125	0.11	+0.3
2,050,444	+		DDA3937_RS09125	0.14	-0.1
2,050,444	+		DDA3937_RS09125	0.14	-0.3
2,050,465	+		DDA3937_RS09125	0.16	-0.1
2,050,465	+		DDA3937_RS09125	0.16	-1.1
2,050,465	+		DDA3937_RS09125	0.16	-0.7
2,050,465	+		DDA3937_RS09125	0.16	-0.1
2,050,466	-		DDA3937_RS09125	0.16	-1.4
2,050,476	+		DDA3937_RS09125	0.17	-0.1
2,050,506	-		DDA3937_RS09125	0.20	-0.3
2,050,506	-		DDA3937_RS09125	0.20	+0.9
2,050,506	-		DDA3937_RS09125	0.20	-0.3
2,050,506	-				+1.7
2,050,506	-		DDA3937_RS09125	0.20	-0.4
2,050,628	-		DDA3937_RS09125	0.32	-0.9
2,050,633	+		DDA3937_RS09125	0.32	-0.1
2,050,648	+		DDA3937_RS09125	0.34	+0.7
2,050,723	+		DDA3937_RS09125	0.41	+1.1
2,050,723	+		DDA3937_RS09125	0.41	+1.0
2,050,724	-		DDA3937_RS09125	0.41	-0.0
2,050,899	+		DDA3937_RS09125	0.59	+1.2