Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09010

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,029,372	+		DDA3937_RS09005	0.16	+0.0
2,029,372	+		DDA3937_RS09005	0.16	-0.2
2,029,402	+		DDA3937_RS09005	0.19	-0.4
2,029,422	+		DDA3937_RS09005	0.21	-2.6
2,029,422	+		DDA3937_RS09005	0.21	-0.1
2,029,422	+		DDA3937_RS09005	0.21	-0.3
2,029,423	-		DDA3937_RS09005	0.21	-1.6
2,029,425	+		DDA3937_RS09005	0.22	-0.9
2,029,504	+		DDA3937_RS09005	0.30	+0.3
2,029,504	+		DDA3937_RS09005	0.30	+0.2
2,029,504	+		DDA3937_RS09005	0.30	+0.9
2,029,504	+		DDA3937_RS09005	0.30	-2.5
2,029,504	+		DDA3937_RS09005	0.30	-1.1
2,029,505	-		DDA3937_RS09005	0.30	-1.4
2,029,508	-		DDA3937_RS09005	0.31	+0.5
2,029,589	-		DDA3937_RS09005	0.40	-0.1
2,029,589	-		DDA3937_RS09005	0.40	-0.3
2,029,601	-		DDA3937_RS09005	0.41	-0.9
2,029,601	-		DDA3937_RS09005	0.41	+0.7
2,029,601	-		DDA3937_RS09005	0.41	+2.1
2,029,617	+		DDA3937_RS09005	0.43	+0.5
2,029,617	+		DDA3937_RS09005	0.43	+0.1
2,029,618	-		DDA3937_RS09005	0.43	+1.1
2,029,618	-		DDA3937_RS09005	0.43	-0.9
2,029,618	-		DDA3937_RS09005	0.43	-0.4
2,029,619	+		DDA3937_RS09005	0.43	-0.4
2,029,620	-		DDA3937_RS09005	0.43	+0.2
2,029,682	+		DDA3937_RS09005	0.50	+1.0
2,029,682	+		DDA3937_RS09005	0.50	+0.0
2,029,682	+		DDA3937_RS09005	0.50	+2.3
2,029,682	+		DDA3937_RS09005	0.50	-0.5
2,029,683	-		DDA3937_RS09005	0.50	-2.1
2,029,707	+		DDA3937_RS09005	0.53	+0.4
2,029,707	+		DDA3937_RS09005	0.53	+0.5
2,029,707	+		DDA3937_RS09005	0.53	+0.3
2,029,708	-		DDA3937_RS09005	0.53	-0.6
2,029,708	-		DDA3937_RS09005	0.53	-0.3
2,029,708	-		DDA3937_RS09005	0.53	-0.9
2,029,708	-		DDA3937_RS09005	0.53	-1.1
2,029,731	-		DDA3937_RS09005	0.55	-1.9
2,029,737	+		DDA3937_RS09005	0.56	-1.6
2,029,737	+		DDA3937_RS09005	0.56	-1.5
2,029,738	-		DDA3937_RS09005	0.56	+0.1
2,029,741	+		DDA3937_RS09005	0.57	+0.2
2,029,741	+		DDA3937_RS09005	0.57	-0.9
2,029,741	+				-1.3
2,029,742	-		DDA3937_RS09005	0.57	-1.0
2,029,742	-		DDA3937_RS09005	0.57	-0.3
2,029,742	-		DDA3937_RS09005	0.57	-0.5
2,029,745	+		DDA3937_RS09005	0.57	-0.6
2,029,745	+		DDA3937_RS09005	0.57	-0.5
2,029,746	-				+0.1
2,029,764	-		DDA3937_RS09005	0.59	-0.7
2,029,800	+		DDA3937_RS09005	0.63	+0.5
2,029,801	-		DDA3937_RS09005	0.63	-2.5
2,029,801	-		DDA3937_RS09005	0.63	-1.4
2,029,802	+		DDA3937_RS09005	0.63	+0.2
2,029,802	+		DDA3937_RS09005	0.63	-1.1
2,029,802	+		DDA3937_RS09005	0.63	-0.4
2,029,803	-		DDA3937_RS09005	0.63	-0.4
2,029,823	+				-1.6
2,029,823	+		DDA3937_RS09005	0.66	-0.7
2,029,824	-				-1.3
2,029,853	+		DDA3937_RS09005	0.69	+0.1
2,029,854	-		DDA3937_RS09005	0.69	-0.6
2,029,854	-		DDA3937_RS09005	0.69	-0.1
2,029,973	-		DDA3937_RS09005	0.82	-1.6
2,029,978	+		DDA3937_RS09005	0.83	-0.4
2,029,978	+		DDA3937_RS09005	0.83	+0.7
2,029,978	+		DDA3937_RS09005	0.83	-1.0
2,029,978	+		DDA3937_RS09005	0.83	+0.5
2,029,979	-		DDA3937_RS09005	0.83	-0.3
2,029,981	+		DDA3937_RS09005	0.83	-2.0
2,029,993	-		DDA3937_RS09005	0.84	-0.9
2,030,025	+		DDA3937_RS09005	0.88	+2.0
2,030,151	-				-0.6
2,030,155	-				+0.5
2,030,164	+				-1.3
2,030,164	+				-1.9
2,030,165	-				+0.8
2,030,165	-				+0.5
2,030,169	-				-0.0
2,030,182	-				-0.1
2,030,182	-				-0.7
2,030,297	+				+0.3
2,030,297	+				-0.2
2,030,298	-				+0.9
2,030,298	-				-0.3
2,030,298	-				+1.0
2,030,298	-				-0.4
2,030,298	-				-2.6
2,030,298	-				-0.3
2,030,345	-				+0.7
2,030,348	+				+0.5
2,030,348	+				-0.0
2,030,348	+				+0.1
2,030,349	-				-1.0
2,030,366	+				-1.3
2,030,367	-				-0.1
2,030,367	-				-0.3
2,030,480	+		DDA3937_RS09010	0.33	+1.1
2,030,514	-		DDA3937_RS09010	0.41	-0.9
2,030,543	+				-0.3
2,030,553	+		DDA3937_RS09010	0.50	-1.0
2,030,553	+		DDA3937_RS09010	0.50	-0.8
2,030,554	-		DDA3937_RS09010	0.50	+0.5
2,030,554	-		DDA3937_RS09010	0.50	-1.2
2,030,617	+		DDA3937_RS09010	0.65	-1.3
2,030,618	-		DDA3937_RS09010	0.65	-1.1
2,030,778	+				-0.7
2,030,779	-				-0.9
2,030,792	+				+0.0
2,030,793	-				+0.1
2,030,793	-				-0.1
2,030,909	-				-1.9
2,030,963	+				-1.3
2,031,077	+				-0.5
2,031,124	+				-0.3
2,031,173	+				-0.8
2,031,188	+				-1.2
2,031,193	+				+0.1
2,031,230	+				-0.6
2,031,341	-				+1.1
2,031,370	+				-1.3
2,031,648	-		DDA3937_RS09015	0.29	+0.7
2,031,675	+		DDA3937_RS09015	0.32	+0.5
2,031,694	-		DDA3937_RS09015	0.34	-0.0
2,031,696	+		DDA3937_RS09015	0.34	-1.1
2,031,765	-		DDA3937_RS09015	0.42	-1.3