Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08795

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08790 and DDA3937_RS08795 are separated by 71 nucleotidesDDA3937_RS08795 and DDA3937_RS08800 are separated by 238 nucleotidesDDA3937_RS08800 and DDA3937_RS08805 overlap by 4 nucleotides DDA3937_RS08790: DDA3937_RS08790 - phosphatase PAP2 family protein, at 1,986,953 to 1,988,230 _RS08790 DDA3937_RS08795: DDA3937_RS08795 - DUF1349 domain-containing protein, at 1,988,302 to 1,989,999 _RS08795 DDA3937_RS08800: DDA3937_RS08800 - glutamine ABC transporter ATP-binding protein GlnQ, at 1,990,238 to 1,990,960 _RS08800 DDA3937_RS08805: DDA3937_RS08805 - glutamine ABC transporter permease GlnP, at 1,990,957 to 1,991,616 _RS08805 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -2 -1 0 1at 1987.325 kb on - strand, within DDA3937_RS08790at 1987.342 kb on + strand, within DDA3937_RS08790at 1987.342 kb on + strand, within DDA3937_RS08790at 1987.342 kb on + strand, within DDA3937_RS08790at 1987.342 kb on + strand, within DDA3937_RS08790at 1987.342 kb on + strand, within DDA3937_RS08790at 1987.343 kb on - strand, within DDA3937_RS08790at 1987.343 kb on - strand, within DDA3937_RS08790at 1987.343 kb on - strand, within DDA3937_RS08790at 1987.407 kb on - strand, within DDA3937_RS08790at 1987.482 kb on + strand, within DDA3937_RS08790at 1987.482 kb on + strand, within DDA3937_RS08790at 1987.482 kb on + strand, within DDA3937_RS08790at 1987.482 kb on + strand, within DDA3937_RS08790at 1987.483 kb on - strand, within DDA3937_RS08790at 1987.483 kb on - strand, within DDA3937_RS08790at 1987.483 kb on - strand, within DDA3937_RS08790at 1987.483 kb on - strand, within DDA3937_RS08790at 1987.483 kb on - strand, within DDA3937_RS08790at 1987.522 kb on + strand, within DDA3937_RS08790at 1987.523 kb on - strand, within DDA3937_RS08790at 1987.523 kb on - strand, within DDA3937_RS08790at 1987.583 kb on - strand, within DDA3937_RS08790at 1987.583 kb on - strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.628 kb on + strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.629 kb on - strand, within DDA3937_RS08790at 1987.630 kb on + strand, within DDA3937_RS08790at 1987.630 kb on + strand, within DDA3937_RS08790at 1987.630 kb on + strand, within DDA3937_RS08790at 1987.631 kb on - strand, within DDA3937_RS08790at 1987.631 kb on - strand, within DDA3937_RS08790at 1987.631 kb on - strand, within DDA3937_RS08790at 1987.677 kb on - strand, within DDA3937_RS08790at 1987.678 kb on + strand, within DDA3937_RS08790at 1987.678 kb on + strand, within DDA3937_RS08790at 1987.776 kb on + strand, within DDA3937_RS08790at 1987.776 kb on + strand, within DDA3937_RS08790at 1987.948 kb on + strand, within DDA3937_RS08790at 1987.948 kb on + strand, within DDA3937_RS08790at 1987.961 kb on + strand, within DDA3937_RS08790at 1987.962 kb on - strand, within DDA3937_RS08790at 1987.988 kb on + strand, within DDA3937_RS08790at 1987.994 kb on + strand, within DDA3937_RS08790at 1987.995 kb on - strand, within DDA3937_RS08790at 1988.006 kb on + strand, within DDA3937_RS08790at 1988.006 kb on + strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.007 kb on - strand, within DDA3937_RS08790at 1988.026 kb on - strand, within DDA3937_RS08790at 1988.028 kb on + strand, within DDA3937_RS08790at 1988.028 kb on + strand, within DDA3937_RS08790at 1988.029 kb on - strand, within DDA3937_RS08790at 1988.124 kb on + strandat 1988.228 kb on + strandat 1988.228 kb on + strandat 1988.229 kb on - strandat 1988.229 kb on - strandat 1988.229 kb on - strandat 1988.249 kb on + strandat 1988.250 kb on - strandat 1988.250 kb on - strandat 1988.250 kb on - strandat 1988.250 kb on - strandat 1988.282 kb on + strandat 1988.283 kb on - strandat 1988.283 kb on - strandat 1988.310 kb on + strandat 1988.378 kb on + strandat 1988.378 kb on + strandat 1988.378 kb on + strandat 1988.378 kb on + strandat 1988.379 kb on - strandat 1988.379 kb on - strandat 1988.379 kb on - strandat 1988.379 kb on - strandat 1988.379 kb on - strandat 1988.379 kb on - strandat 1988.457 kb on + strandat 1988.457 kb on + strandat 1988.458 kb on - strandat 1988.458 kb on - strandat 1988.458 kb on - strandat 1988.594 kb on + strand, within DDA3937_RS08795at 1988.607 kb on + strand, within DDA3937_RS08795at 1988.608 kb on - strand, within DDA3937_RS08795at 1988.609 kb on + strand, within DDA3937_RS08795at 1988.609 kb on + strand, within DDA3937_RS08795at 1988.609 kb on + strand, within DDA3937_RS08795at 1988.609 kb on + strand, within DDA3937_RS08795at 1988.610 kb on - strand, within DDA3937_RS08795at 1988.610 kb on - strand, within DDA3937_RS08795at 1988.610 kb on - strand, within DDA3937_RS08795at 1988.639 kb on - strand, within DDA3937_RS08795at 1988.639 kb on - strand, within DDA3937_RS08795at 1988.670 kb on + strand, within DDA3937_RS08795at 1988.670 kb on + strand, within DDA3937_RS08795at 1988.672 kb on + strand, within DDA3937_RS08795at 1988.673 kb on - strand, within DDA3937_RS08795at 1988.726 kb on + strand, within DDA3937_RS08795at 1988.760 kb on + strand, within DDA3937_RS08795at 1988.926 kb on - strand, within DDA3937_RS08795at 1988.927 kb on + strand, within DDA3937_RS08795at 1988.927 kb on + strand, within DDA3937_RS08795at 1989.021 kb on - strand, within DDA3937_RS08795at 1989.038 kb on + strand, within DDA3937_RS08795at 1989.038 kb on + strand, within DDA3937_RS08795at 1989.039 kb on - strand, within DDA3937_RS08795at 1989.059 kb on + strand, within DDA3937_RS08795at 1989.059 kb on + strand, within DDA3937_RS08795at 1989.060 kb on - strand, within DDA3937_RS08795at 1989.060 kb on - strandat 1989.092 kb on + strand, within DDA3937_RS08795at 1989.201 kb on + strand, within DDA3937_RS08795at 1989.216 kb on - strand, within DDA3937_RS08795at 1989.250 kb on - strand, within DDA3937_RS08795at 1989.326 kb on + strand, within DDA3937_RS08795at 1989.327 kb on - strand, within DDA3937_RS08795at 1989.374 kb on + strand, within DDA3937_RS08795at 1989.519 kb on + strand, within DDA3937_RS08795at 1989.520 kb on - strand, within DDA3937_RS08795at 1989.561 kb on + strand, within DDA3937_RS08795at 1989.626 kb on + strand, within DDA3937_RS08795at 1989.627 kb on - strand, within DDA3937_RS08795at 1989.627 kb on - strand, within DDA3937_RS08795at 1989.654 kb on - strand, within DDA3937_RS08795at 1989.702 kb on - strand, within DDA3937_RS08795at 1989.702 kb on - strand, within DDA3937_RS08795at 1989.702 kb on - strand, within DDA3937_RS08795at 1989.742 kb on - strand, within DDA3937_RS08795at 1989.742 kb on - strand, within DDA3937_RS08795at 1989.742 kb on - strand, within DDA3937_RS08795at 1989.821 kb on + strand, within DDA3937_RS08795at 1990.078 kb on + strandat 1990.078 kb on + strandat 1990.079 kb on - strandat 1990.079 kb on - strandat 1990.080 kb on + strandat 1990.080 kb on + strandat 1990.081 kb on - strandat 1990.115 kb on + strandat 1990.115 kb on + strandat 1990.116 kb on - strandat 1990.116 kb on - strandat 1990.116 kb on - strandat 1990.495 kb on + strand, within DDA3937_RS08800at 1990.495 kb on + strand, within DDA3937_RS08800at 1990.496 kb on - strandat 1990.496 kb on - strand, within DDA3937_RS08800at 1990.646 kb on + strand, within DDA3937_RS08800at 1990.701 kb on + strand, within DDA3937_RS08800at 1990.702 kb on - strand, within DDA3937_RS08800at 1990.871 kb on + strand, within DDA3937_RS08800at 1990.871 kb on + strand, within DDA3937_RS08800at 1990.872 kb on - strand, within DDA3937_RS08800at 1990.872 kb on - strand, within DDA3937_RS08800at 1990.874 kb on + strand, within DDA3937_RS08800at 1990.875 kb on - strand, within DDA3937_RS08800at 1990.875 kb on - strand, within DDA3937_RS08800at 1990.875 kb on - strand, within DDA3937_RS08800at 1990.875 kb on - strand, within DDA3937_RS08800at 1990.875 kb on - strand, within DDA3937_RS08800at 1990.875 kb on - strand, within DDA3937_RS08800at 1990.929 kb on + strandat 1990.960 kb on + strandat 1990.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,987,325 - DDA3937_RS08790 0.29 -0.6
1,987,342 + DDA3937_RS08790 0.30 +1.1
1,987,342 + DDA3937_RS08790 0.30 -0.4
1,987,342 + DDA3937_RS08790 0.30 -0.2
1,987,342 + DDA3937_RS08790 0.30 -0.9
1,987,342 + DDA3937_RS08790 0.30 -1.0
1,987,343 - DDA3937_RS08790 0.31 +0.7
1,987,343 - DDA3937_RS08790 0.31 -0.9
1,987,343 - DDA3937_RS08790 0.31 +0.3
1,987,407 - DDA3937_RS08790 0.36 -0.4
1,987,482 + DDA3937_RS08790 0.41 +0.1
1,987,482 + DDA3937_RS08790 0.41 +0.7
1,987,482 + DDA3937_RS08790 0.41 -0.7
1,987,482 + DDA3937_RS08790 0.41 -0.3
1,987,483 - DDA3937_RS08790 0.41 -1.4
1,987,483 - DDA3937_RS08790 0.41 -0.2
1,987,483 - DDA3937_RS08790 0.41 +0.9
1,987,483 - DDA3937_RS08790 0.41 +0.3
1,987,483 - DDA3937_RS08790 0.41 -1.5
1,987,522 + DDA3937_RS08790 0.45 -0.8
1,987,523 - DDA3937_RS08790 0.45 +0.7
1,987,523 - DDA3937_RS08790 0.45 +0.2
1,987,583 - DDA3937_RS08790 0.49 +1.2
1,987,583 - DDA3937_RS08790 0.49 -0.6
1,987,628 + DDA3937_RS08790 0.53 -0.3
1,987,628 + DDA3937_RS08790 0.53 +1.3
1,987,628 + DDA3937_RS08790 0.53 -2.0
1,987,628 + DDA3937_RS08790 0.53 -0.2
1,987,628 + DDA3937_RS08790 0.53 -1.5
1,987,628 + DDA3937_RS08790 0.53 -0.2
1,987,628 + DDA3937_RS08790 0.53 +0.2
1,987,628 + DDA3937_RS08790 0.53 -0.6
1,987,628 + DDA3937_RS08790 0.53 +0.5
1,987,628 + DDA3937_RS08790 0.53 +0.7
1,987,629 - DDA3937_RS08790 0.53 -0.5
1,987,629 - DDA3937_RS08790 0.53 +1.1
1,987,629 - DDA3937_RS08790 0.53 -1.2
1,987,629 - DDA3937_RS08790 0.53 -0.8
1,987,629 - DDA3937_RS08790 0.53 -2.1
1,987,629 - DDA3937_RS08790 0.53 +0.1
1,987,629 - DDA3937_RS08790 0.53 -1.3
1,987,630 + DDA3937_RS08790 0.53 +0.3
1,987,630 + DDA3937_RS08790 0.53 -0.1
1,987,630 + DDA3937_RS08790 0.53 -0.4
1,987,631 - DDA3937_RS08790 0.53 +0.6
1,987,631 - DDA3937_RS08790 0.53 -0.1
1,987,631 - DDA3937_RS08790 0.53 +0.2
1,987,677 - DDA3937_RS08790 0.57 -0.6
1,987,678 + DDA3937_RS08790 0.57 -0.5
1,987,678 + DDA3937_RS08790 0.57 -0.4
1,987,776 + DDA3937_RS08790 0.64 -1.1
1,987,776 + DDA3937_RS08790 0.64 -0.0
1,987,948 + DDA3937_RS08790 0.78 -0.1
1,987,948 + DDA3937_RS08790 0.78 +0.2
1,987,961 + DDA3937_RS08790 0.79 -2.3
1,987,962 - DDA3937_RS08790 0.79 -0.1
1,987,988 + DDA3937_RS08790 0.81 -0.3
1,987,994 + DDA3937_RS08790 0.81 -0.5
1,987,995 - DDA3937_RS08790 0.82 +1.0
1,988,006 + DDA3937_RS08790 0.82 -0.4
1,988,006 + DDA3937_RS08790 0.82 -2.3
1,988,007 - DDA3937_RS08790 0.82 +0.1
1,988,007 - DDA3937_RS08790 0.82 -0.8
1,988,007 - DDA3937_RS08790 0.82 -0.4
1,988,007 - DDA3937_RS08790 0.82 +0.1
1,988,007 - DDA3937_RS08790 0.82 -0.5
1,988,007 - DDA3937_RS08790 0.82 +0.1
1,988,007 - DDA3937_RS08790 0.82 +0.5
1,988,026 - DDA3937_RS08790 0.84 -0.1
1,988,028 + DDA3937_RS08790 0.84 -0.5
1,988,028 + DDA3937_RS08790 0.84 -1.0
1,988,029 - DDA3937_RS08790 0.84 -0.5
1,988,124 + -0.4
1,988,228 + -0.3
1,988,228 + -0.6
1,988,229 - -1.3
1,988,229 - -0.2
1,988,229 - +0.9
1,988,249 + +0.4
1,988,250 - -0.7
1,988,250 - -1.1
1,988,250 - -1.3
1,988,250 - +0.6
1,988,282 + +0.4
1,988,283 - +0.2
1,988,283 - -0.5
1,988,310 + -1.5
1,988,378 + +0.5
1,988,378 + -0.9
1,988,378 + -0.1
1,988,378 + +0.7
1,988,379 - +0.7
1,988,379 - +0.2
1,988,379 - -0.0
1,988,379 - +0.4
1,988,379 - +0.4
1,988,379 - +0.5
1,988,457 + -0.5
1,988,457 + +0.7
1,988,458 - +0.4
1,988,458 - -1.5
1,988,458 - -0.1
1,988,594 + DDA3937_RS08795 0.17 -0.4
1,988,607 + DDA3937_RS08795 0.18 +0.2
1,988,608 - DDA3937_RS08795 0.18 -0.0
1,988,609 + DDA3937_RS08795 0.18 +0.7
1,988,609 + DDA3937_RS08795 0.18 -1.3
1,988,609 + DDA3937_RS08795 0.18 -1.3
1,988,609 + DDA3937_RS08795 0.18 -0.5
1,988,610 - DDA3937_RS08795 0.18 +1.6
1,988,610 - DDA3937_RS08795 0.18 -0.3
1,988,610 - DDA3937_RS08795 0.18 -0.9
1,988,639 - DDA3937_RS08795 0.20 +0.1
1,988,639 - DDA3937_RS08795 0.20 -1.1
1,988,670 + DDA3937_RS08795 0.22 +0.5
1,988,670 + DDA3937_RS08795 0.22 -0.1
1,988,672 + DDA3937_RS08795 0.22 -0.4
1,988,673 - DDA3937_RS08795 0.22 -1.3
1,988,726 + DDA3937_RS08795 0.25 +0.6
1,988,760 + DDA3937_RS08795 0.27 -0.2
1,988,926 - DDA3937_RS08795 0.37 +0.1
1,988,927 + DDA3937_RS08795 0.37 +0.0
1,988,927 + DDA3937_RS08795 0.37 -0.7
1,989,021 - DDA3937_RS08795 0.42 -0.6
1,989,038 + DDA3937_RS08795 0.43 +0.2
1,989,038 + DDA3937_RS08795 0.43 +0.9
1,989,039 - DDA3937_RS08795 0.43 +0.1
1,989,059 + DDA3937_RS08795 0.45 +0.3
1,989,059 + DDA3937_RS08795 0.45 -0.2
1,989,060 - DDA3937_RS08795 0.45 -0.5
1,989,060 - +1.3
1,989,092 + DDA3937_RS08795 0.47 +0.3
1,989,201 + DDA3937_RS08795 0.53 +0.7
1,989,216 - DDA3937_RS08795 0.54 -1.2
1,989,250 - DDA3937_RS08795 0.56 +1.2
1,989,326 + DDA3937_RS08795 0.60 -1.6
1,989,327 - DDA3937_RS08795 0.60 -0.4
1,989,374 + DDA3937_RS08795 0.63 +0.3
1,989,519 + DDA3937_RS08795 0.72 +1.0
1,989,520 - DDA3937_RS08795 0.72 -0.0
1,989,561 + DDA3937_RS08795 0.74 -2.4
1,989,626 + DDA3937_RS08795 0.78 -2.1
1,989,627 - DDA3937_RS08795 0.78 +0.7
1,989,627 - DDA3937_RS08795 0.78 -0.4
1,989,654 - DDA3937_RS08795 0.80 +0.7
1,989,702 - DDA3937_RS08795 0.82 +0.4
1,989,702 - DDA3937_RS08795 0.82 -0.0
1,989,702 - DDA3937_RS08795 0.82 -0.7
1,989,742 - DDA3937_RS08795 0.85 +0.3
1,989,742 - DDA3937_RS08795 0.85 -0.5
1,989,742 - DDA3937_RS08795 0.85 -0.2
1,989,821 + DDA3937_RS08795 0.89 -0.1
1,990,078 + +0.1
1,990,078 + -0.4
1,990,079 - +0.5
1,990,079 - -0.2
1,990,080 + +0.1
1,990,080 + -0.1
1,990,081 - -1.6
1,990,115 + -0.4
1,990,115 + -1.5
1,990,116 - -0.9
1,990,116 - -0.7
1,990,116 - +0.0
1,990,495 + DDA3937_RS08800 0.36 -0.7
1,990,495 + DDA3937_RS08800 0.36 +0.3
1,990,496 - -0.3
1,990,496 - DDA3937_RS08800 0.36 -0.2
1,990,646 + DDA3937_RS08800 0.56 -0.9
1,990,701 + DDA3937_RS08800 0.64 -0.2
1,990,702 - DDA3937_RS08800 0.64 -0.1
1,990,871 + DDA3937_RS08800 0.88 +0.2
1,990,871 + DDA3937_RS08800 0.88 -0.5
1,990,872 - DDA3937_RS08800 0.88 -0.0
1,990,872 - DDA3937_RS08800 0.88 -0.3
1,990,874 + DDA3937_RS08800 0.88 -0.6
1,990,875 - DDA3937_RS08800 0.88 -0.1
1,990,875 - DDA3937_RS08800 0.88 -0.6
1,990,875 - DDA3937_RS08800 0.88 -0.6
1,990,875 - DDA3937_RS08800 0.88 +0.2
1,990,875 - DDA3937_RS08800 0.88 +0.5
1,990,875 - DDA3937_RS08800 0.88 -0.6
1,990,929 + -1.3
1,990,960 + -1.9
1,990,961 - +0.2

Or see this region's nucleotide sequence