Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08600

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,940,214	+		DDA3937_RS08595	0.40	-0.4
1,940,234	+		DDA3937_RS08595	0.41	-0.3
1,940,270	+		DDA3937_RS08595	0.44	+0.5
1,940,271	-		DDA3937_RS08595	0.44	+0.7
1,940,271	-		DDA3937_RS08595	0.44	-1.3
1,940,271	-		DDA3937_RS08595	0.44	+1.0
1,940,271	-		DDA3937_RS08595	0.44	+0.2
1,940,685	+		DDA3937_RS08595	0.70	-0.4
1,940,685	+		DDA3937_RS08595	0.70	-0.8
1,940,685	+		DDA3937_RS08595	0.70	-0.8
1,940,685	+		DDA3937_RS08595	0.70	-2.6
1,940,685	+		DDA3937_RS08595	0.70	-0.9
1,940,685	+		DDA3937_RS08595	0.70	+0.3
1,940,685	+		DDA3937_RS08595	0.70	+1.0
1,940,685	+		DDA3937_RS08595	0.70	+0.1
1,940,685	+		DDA3937_RS08595	0.70	-0.2
1,940,685	+		DDA3937_RS08595	0.70	+0.9
1,940,685	+		DDA3937_RS08595	0.70	+0.2
1,940,685	+		DDA3937_RS08595	0.70	-0.3
1,940,685	+		DDA3937_RS08595	0.70	+0.5
1,940,686	-		DDA3937_RS08595	0.70	+0.2
1,940,686	-		DDA3937_RS08595	0.70	+0.1
1,940,686	-		DDA3937_RS08595	0.70	-0.9
1,940,686	-		DDA3937_RS08595	0.70	-0.3
1,940,686	-		DDA3937_RS08595	0.70	+0.0
1,940,686	-		DDA3937_RS08595	0.70	+0.7
1,940,688	-		DDA3937_RS08595	0.70	+0.2
1,940,764	-		DDA3937_RS08595	0.75	-0.9
1,940,793	+		DDA3937_RS08595	0.76	+0.5
1,940,793	+		DDA3937_RS08595	0.76	+0.3
1,940,793	+		DDA3937_RS08595	0.76	-1.6
1,940,794	-		DDA3937_RS08595	0.77	-0.4
1,940,794	-		DDA3937_RS08595	0.77	+1.1
1,940,794	-		DDA3937_RS08595	0.77	+0.3
1,940,794	-		DDA3937_RS08595	0.77	-0.5
1,940,797	+		DDA3937_RS08595	0.77	-0.6
1,940,797	+		DDA3937_RS08595	0.77	+1.3
1,940,797	+		DDA3937_RS08595	0.77	+1.0
1,940,797	+		DDA3937_RS08595	0.77	-1.3
1,940,798	-		DDA3937_RS08595	0.77	+0.3
1,940,798	-		DDA3937_RS08595	0.77	-0.0
1,940,798	-		DDA3937_RS08595	0.77	+0.0
1,940,798	-		DDA3937_RS08595	0.77	-0.2
1,940,798	-		DDA3937_RS08595	0.77	-1.3
1,940,798	-		DDA3937_RS08595	0.77	+0.1
1,940,798	-		DDA3937_RS08595	0.77	-0.1
1,940,807	+		DDA3937_RS08595	0.77	+0.7
1,940,807	+				+1.3
1,940,825	+		DDA3937_RS08595	0.78	+0.2
1,940,826	-		DDA3937_RS08595	0.79	-0.6
1,941,069	+				-1.1
1,941,070	-				+0.7
1,941,070	-				-0.5
1,941,070	-				-1.3
1,941,071	+				-2.4
1,941,072	-				-1.1
1,941,072	-				-0.1
1,941,098	+				+0.1
1,941,169	+				-0.3
1,941,169	+				-0.8
1,941,414	+		DDA3937_RS08600	0.24	+0.5
1,941,833	+		DDA3937_RS08600	0.65	+0.9
1,941,833	+		DDA3937_RS08600	0.65	-1.3
1,941,834	-		DDA3937_RS08600	0.65	+0.5
1,941,834	-		DDA3937_RS08600	0.65	-0.3
1,941,834	-		DDA3937_RS08600	0.65	-1.4
1,941,973	+		DDA3937_RS08600	0.78	-0.9
1,941,973	+		DDA3937_RS08600	0.78	-0.3
1,941,974	-		DDA3937_RS08600	0.78	+0.4
1,941,974	-		DDA3937_RS08600	0.78	-0.5
1,941,976	+		DDA3937_RS08600	0.78	-0.3
1,941,976	+		DDA3937_RS08600	0.78	+1.3
1,941,976	+		DDA3937_RS08600	0.78	-0.5
1,941,976	+		DDA3937_RS08600	0.78	+0.3
1,941,977	-		DDA3937_RS08600	0.79	-0.9
1,941,977	-		DDA3937_RS08600	0.79	+0.3
1,941,977	-				+1.7
1,941,977	-		DDA3937_RS08600	0.79	-0.3
1,941,977	-		DDA3937_RS08600	0.79	+0.3
1,941,977	-		DDA3937_RS08600	0.79	-0.2
1,942,117	-				+1.0
1,942,196	+				+0.8
1,942,197	-				-0.7
1,942,235	-				+0.3
1,942,235	-				+0.5
1,942,239	-				-1.2
1,942,239	-				-0.8
1,942,255	+				-0.6
1,942,255	+				-1.1
1,942,255	+				-0.6
1,942,256	-				-0.7
1,942,283	+				-2.4
1,942,310	-				+0.6
1,942,331	-				+0.5
1,942,432	+				+0.4
1,942,432	+				-0.3
1,942,432	+				-0.4
1,942,432	+				-0.3
1,942,432	+				-0.8
1,942,432	+				-0.8
1,942,433	-				-1.0
1,942,433	-				-0.3
1,942,433	-				+1.2
1,942,433	-				-1.6
1,942,433	-				-0.3
1,942,433	-				-0.7
1,942,433	-				+0.2
1,942,434	+				+0.7
1,942,434	+				+0.3
1,942,435	-				+0.8
1,942,435	-				+0.5
1,942,448	-		DDA3937_RS08605	0.11	+0.1
1,942,448	-		DDA3937_RS08605	0.11	-1.0
1,942,448	-		DDA3937_RS08605	0.11	+0.9
1,942,496	-		DDA3937_RS08605	0.18	-1.7
1,942,649	-		DDA3937_RS08605	0.39	+0.7
1,942,694	-		DDA3937_RS08605	0.46	+1.4
1,942,760	-		DDA3937_RS08605	0.55	-2.1
1,942,765	+		DDA3937_RS08605	0.56	-0.1
1,942,766	-		DDA3937_RS08605	0.56	-0.5
1,942,888	+		DDA3937_RS08605	0.73	-0.5
1,942,888	+		DDA3937_RS08605	0.73	-0.3
1,942,888	+		DDA3937_RS08605	0.73	-0.1
1,942,889	-		DDA3937_RS08605	0.73	-1.3
1,942,889	-		DDA3937_RS08605	0.73	-0.3
1,942,924	+		DDA3937_RS08605	0.78	+0.3
1,942,924	+		DDA3937_RS08605	0.78	-0.4
1,942,925	-		DDA3937_RS08605	0.78	-0.6
1,942,925	-		DDA3937_RS08605	0.78	-0.2
1,942,981	-		DDA3937_RS08605	0.86	-0.0
1,942,994	-		DDA3937_RS08605	0.88	-0.8
1,943,021	-				-1.4
1,943,021	-				+0.1
1,943,021	-				+0.0