Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08390

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,899,446	-		DDA3937_RS08385	0.41	-2.3
1,899,524	+		DDA3937_RS08385	0.46	-1.9
1,899,524	+		DDA3937_RS08385	0.46	-1.1
1,899,525	-		DDA3937_RS08385	0.46	+0.3
1,899,529	-		DDA3937_RS08385	0.46	+0.5
1,899,576	+		DDA3937_RS08385	0.49	-1.5
1,899,576	+		DDA3937_RS08385	0.49	-0.1
1,899,583	-		DDA3937_RS08385	0.50	+0.0
1,899,611	+		DDA3937_RS08385	0.51	-0.0
1,899,611	+		DDA3937_RS08385	0.51	+0.6
1,899,611	+		DDA3937_RS08385	0.51	-1.1
1,899,612	-		DDA3937_RS08385	0.52	+1.0
1,899,612	-		DDA3937_RS08385	0.52	-0.8
1,899,615	+		DDA3937_RS08385	0.52	-0.4
1,899,626	-		DDA3937_RS08385	0.52	-0.2
1,899,629	+		DDA3937_RS08385	0.53	-0.9
1,899,630	-		DDA3937_RS08385	0.53	-2.4
1,899,630	-				-1.6
1,899,644	+				-0.3
1,899,646	+		DDA3937_RS08385	0.54	-0.2
1,899,646	+		DDA3937_RS08385	0.54	+1.0
1,899,646	+		DDA3937_RS08385	0.54	+0.5
1,899,646	+		DDA3937_RS08385	0.54	+1.0
1,899,646	+		DDA3937_RS08385	0.54	+0.7
1,899,647	-		DDA3937_RS08385	0.54	-1.6
1,899,647	-		DDA3937_RS08385	0.54	+1.1
1,899,647	-		DDA3937_RS08385	0.54	+0.2
1,899,647	-		DDA3937_RS08385	0.54	-0.3
1,899,647	-		DDA3937_RS08385	0.54	-0.4
1,899,647	-		DDA3937_RS08385	0.54	+0.7
1,899,651	-		DDA3937_RS08385	0.54	+0.7
1,899,656	+		DDA3937_RS08385	0.54	-0.8
1,899,656	+				-2.1
1,899,657	-		DDA3937_RS08385	0.54	+1.0
1,899,660	+		DDA3937_RS08385	0.55	-0.1
1,899,660	+		DDA3937_RS08385	0.55	+0.2
1,899,661	-		DDA3937_RS08385	0.55	-1.3
1,899,661	-		DDA3937_RS08385	0.55	+0.1
1,899,661	-		DDA3937_RS08385	0.55	-1.1
1,899,661	-		DDA3937_RS08385	0.55	+0.5
1,899,661	-		DDA3937_RS08385	0.55	+0.1
1,899,669	+		DDA3937_RS08385	0.55	-0.4
1,899,669	+		DDA3937_RS08385	0.55	-1.4
1,899,670	-		DDA3937_RS08385	0.55	-1.6
1,899,670	-		DDA3937_RS08385	0.55	-1.6
1,899,670	-		DDA3937_RS08385	0.55	-1.0
1,899,670	-		DDA3937_RS08385	0.55	-0.5
1,899,670	-		DDA3937_RS08385	0.55	-1.3
1,899,675	+		DDA3937_RS08385	0.56	+0.4
1,899,733	+		DDA3937_RS08385	0.59	-2.9
1,899,734	-		DDA3937_RS08385	0.60	-1.9
1,899,743	+		DDA3937_RS08385	0.60	-0.7
1,899,743	+		DDA3937_RS08385	0.60	+1.2
1,899,743	+				+0.7
1,899,743	+		DDA3937_RS08385	0.60	-0.3
1,899,743	+		DDA3937_RS08385	0.60	+0.7
1,899,743	+		DDA3937_RS08385	0.60	+0.6
1,899,743	+		DDA3937_RS08385	0.60	-0.7
1,899,744	-		DDA3937_RS08385	0.60	+0.4
1,899,744	-		DDA3937_RS08385	0.60	+1.0
1,899,744	-		DDA3937_RS08385	0.60	-1.0
1,899,744	-		DDA3937_RS08385	0.60	-1.9
1,899,744	-		DDA3937_RS08385	0.60	+0.7
1,899,884	+		DDA3937_RS08385	0.69	+0.6
1,899,884	+				+1.3
1,899,884	+		DDA3937_RS08385	0.69	+0.7
1,899,884	+		DDA3937_RS08385	0.69	-0.4
1,899,884	+		DDA3937_RS08385	0.69	-1.7
1,899,884	+		DDA3937_RS08385	0.69	-1.1
1,899,885	-		DDA3937_RS08385	0.69	-0.1
1,899,885	-		DDA3937_RS08385	0.69	-1.3
1,899,885	-		DDA3937_RS08385	0.69	+0.1
1,899,887	+		DDA3937_RS08385	0.69	-0.6
1,899,888	-		DDA3937_RS08385	0.70	-0.7
1,899,905	+		DDA3937_RS08385	0.71	-0.3
1,899,906	-		DDA3937_RS08385	0.71	-1.6
1,899,911	+		DDA3937_RS08385	0.71	-0.4
1,899,911	+		DDA3937_RS08385	0.71	+0.1
1,899,911	+		DDA3937_RS08385	0.71	-0.3
1,899,911	+		DDA3937_RS08385	0.71	+1.2
1,899,912	-		DDA3937_RS08385	0.71	-0.2
1,899,912	-		DDA3937_RS08385	0.71	-0.9
1,899,912	-		DDA3937_RS08385	0.71	+0.0
1,899,934	+		DDA3937_RS08385	0.73	-1.6
1,899,935	-		DDA3937_RS08385	0.73	+0.7
1,900,031	-		DDA3937_RS08385	0.79	-0.3
1,900,031	-		DDA3937_RS08385	0.79	-0.3
1,900,052	+		DDA3937_RS08385	0.80	-1.6
1,900,053	-		DDA3937_RS08385	0.80	-0.6
1,900,055	-		DDA3937_RS08385	0.80	-1.8
1,900,055	-		DDA3937_RS08385	0.80	-0.7
1,900,158	-		DDA3937_RS08385	0.87	-0.7
1,900,203	+				-0.5
1,900,203	+				-0.1
1,900,204	-				-2.4
1,900,204	-				-0.4
1,900,204	-				+0.4
1,900,204	-				-0.4
1,900,204	-				-1.0
1,900,204	-				+0.7
1,900,207	-				-1.5
1,900,207	-				-1.9
1,900,228	+				+1.4
1,900,229	-				-0.7
1,900,255	+				+0.2
1,900,256	-				-0.7
1,900,256	-				-0.0
1,900,256	-				+1.0
1,900,256	-				+0.7
1,900,256	-				+0.2
1,900,256	-				-0.3
1,900,256	-				-1.6
1,900,263	+				+0.3
1,900,263	+				-0.9
1,900,263	+				+0.1
1,900,263	+				-0.9
1,900,263	+				+2.1
1,900,263	+				-1.3
1,900,263	+				-1.2
1,900,263	+				-0.9
1,900,263	+				-0.3
1,900,263	+				-0.9
1,900,263	+				-1.6
1,900,264	-				-0.2
1,900,264	-				-0.1
1,900,264	-				-1.1
1,900,264	-				-0.7
1,900,264	-				-0.8
1,900,264	-				-1.1
1,900,264	-				-0.1
1,900,264	-				-1.3
1,900,264	-				-0.0
1,900,275	+				+0.4
1,900,275	+				+1.3
1,900,277	+				+0.7
1,900,290	-				-0.4
1,900,293	-				-2.3
1,900,293	-				-0.6
1,900,293	-				-0.3
1,900,297	+				-0.7
1,900,354	-				-1.6
1,900,354	-				-2.0
1,900,358	+				-0.4
1,900,397	+				-1.5
1,900,397	+				+1.3
1,900,397	+				-0.3
1,900,397	+				+0.7
1,900,397	+				-1.6
1,900,397	+				-0.3
1,900,397	+				-0.0
1,900,398	-				-0.9
1,900,398	-				-1.0
1,900,399	+				-0.3
1,900,399	+				-0.9
1,900,399	+				-0.8
1,900,399	+				-0.2
1,900,400	-				+0.1
1,900,400	-				+0.1
1,900,418	-				+0.1
1,900,500	-		DDA3937_RS08390	0.15	-2.4
1,900,510	+		DDA3937_RS08390	0.16	-1.6
1,900,521	+		DDA3937_RS08390	0.18	+0.0
1,900,592	-		DDA3937_RS08390	0.31	-0.1
1,900,652	+		DDA3937_RS08390	0.43	-1.0
1,900,701	+		DDA3937_RS08390	0.52	-0.5
1,900,702	-		DDA3937_RS08390	0.52	-0.9
1,900,778	+		DDA3937_RS08390	0.66	-1.8
1,900,778	+		DDA3937_RS08390	0.66	-0.7
1,900,778	+		DDA3937_RS08390	0.66	-1.3
1,900,779	-		DDA3937_RS08390	0.66	+0.0
1,900,779	-		DDA3937_RS08390	0.66	-0.7
1,900,793	+		DDA3937_RS08390	0.69	-1.1
1,900,793	+		DDA3937_RS08390	0.69	-1.2
1,900,837	+		DDA3937_RS08390	0.77	-0.1
1,900,875	-		DDA3937_RS08390	0.84	-1.1
1,900,875	-		DDA3937_RS08390	0.84	+1.1
1,900,950	+				+0.1
1,900,950	+				-1.7
1,900,951	-				-2.1
1,900,951	-				+0.4
1,900,954	+				-0.1
1,900,955	-				-0.1
1,900,955	-				-0.9
1,901,001	-				-0.5
1,901,005	-				-1.6
1,901,108	+				+0.5
1,901,248	-		DDA3937_RS08395	0.15	-0.3
1,901,257	+		DDA3937_RS08395	0.15	-0.5
1,901,258	-		DDA3937_RS08395	0.15	+0.1
1,901,268	-				+1.1
1,901,459	+		DDA3937_RS08395	0.34	-0.3
1,901,484	-				-2.1
1,901,514	-		DDA3937_RS08395	0.39	-1.9
1,901,590	+		DDA3937_RS08395	0.46	+0.5
1,901,738	+		DDA3937_RS08395	0.59	-0.6