Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08085

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,831,552	+				-0.7
1,831,552	+				-1.5
1,831,552	+				+0.1
1,831,553	-				+0.1
1,831,634	-				+0.2
1,831,636	-				-0.9
1,831,719	+				+0.3
1,831,720	-				-0.7
1,831,720	-				-0.6
1,831,720	-				-0.8
1,831,727	-				-0.3
1,831,751	+				-0.3
1,831,910	+		DDA3937_RS08080	0.22	-1.7
1,831,910	+		DDA3937_RS08080	0.22	+0.1
1,831,910	+		DDA3937_RS08080	0.22	+0.6
1,831,910	+		DDA3937_RS08080	0.22	+0.4
1,831,911	-		DDA3937_RS08080	0.22	+0.1
1,831,911	-		DDA3937_RS08080	0.22	+0.2
1,831,911	-		DDA3937_RS08080	0.22	+0.1
1,831,911	-		DDA3937_RS08080	0.22	-2.6
1,831,911	-		DDA3937_RS08080	0.22	+0.7
1,831,911	-		DDA3937_RS08080	0.22	-0.9
1,832,078	+		DDA3937_RS08080	0.49	-1.2
1,832,078	+		DDA3937_RS08080	0.49	-0.0
1,832,079	-		DDA3937_RS08080	0.49	-0.5
1,832,107	+		DDA3937_RS08080	0.53	-1.6
1,832,107	+		DDA3937_RS08080	0.53	-0.0
1,832,107	+		DDA3937_RS08080	0.53	-1.4
1,832,218	+		DDA3937_RS08080	0.71	-1.5
1,832,219	-		DDA3937_RS08080	0.71	-0.2
1,832,249	-		DDA3937_RS08080	0.76	-0.8
1,832,249	-				+1.1
1,832,379	-				-0.4
1,832,393	+				+0.3
1,832,394	-				-0.6
1,832,394	-				+0.2
1,832,400	+				-0.8
1,832,400	+				-0.6
1,832,401	-				+0.7
1,832,401	-				-0.0
1,832,401	-				+1.0
1,832,401	-				-0.6
1,832,403	+				-1.6
1,832,410	-				-0.3
1,832,443	+				-0.9
1,832,444	-				-0.7
1,832,479	+				-0.5
1,832,480	-				-0.9
1,832,480	-				-1.0
1,832,480	-				-0.2
1,832,517	+				-0.6
1,832,517	+				-0.3
1,832,517	+				-0.4
1,832,519	+				-0.7
1,832,520	-				-1.9
1,832,520	-				-0.3
1,832,520	-				+0.1
1,832,521	+				-0.7
1,832,521	+				+0.4
1,832,522	-				-0.7
1,832,572	-				-0.1
1,832,615	+				-0.1
1,832,615	+				-1.3
1,832,616	-		DDA3937_RS08085	0.10	+0.2
1,832,723	-		DDA3937_RS08085	0.19	-0.2
1,832,737	+		DDA3937_RS08085	0.20	-0.0
1,832,737	+		DDA3937_RS08085	0.20	+0.7
1,832,738	-		DDA3937_RS08085	0.20	-0.7
1,832,780	-		DDA3937_RS08085	0.24	+0.4
1,832,952	+		DDA3937_RS08085	0.38	-1.1
1,833,044	-		DDA3937_RS08085	0.45	-1.3
1,833,130	-		DDA3937_RS08085	0.52	+0.1
1,833,131	+		DDA3937_RS08085	0.53	-1.4
1,833,131	+		DDA3937_RS08085	0.53	-0.5
1,833,132	-		DDA3937_RS08085	0.53	+0.5
1,833,161	+		DDA3937_RS08085	0.55	-0.4
1,833,161	+		DDA3937_RS08085	0.55	-1.0
1,833,162	-		DDA3937_RS08085	0.55	+0.7
1,833,200	+		DDA3937_RS08085	0.58	-1.3
1,833,237	-		DDA3937_RS08085	0.61	-1.3
1,833,267	+		DDA3937_RS08085	0.64	-0.5
1,833,343	+		DDA3937_RS08085	0.70	-1.1
1,833,405	+		DDA3937_RS08085	0.75	-1.6
1,833,405	+		DDA3937_RS08085	0.75	-0.7
1,833,450	+		DDA3937_RS08085	0.79	-0.3
1,833,495	+		DDA3937_RS08085	0.83	+0.1
1,833,505	+		DDA3937_RS08085	0.83	-0.1
1,833,545	-		DDA3937_RS08085	0.87	-0.6
1,833,547	+		DDA3937_RS08085	0.87	+0.1
1,833,563	-		DDA3937_RS08085	0.88	-0.1
1,833,585	-				-3.0
1,833,587	-				-1.0
1,833,590	+				-0.5
1,833,591	-				-0.3
1,833,599	+				-0.0
1,833,673	+				+0.1
1,833,679	+				-0.3
1,833,680	-				-1.2
1,833,789	+				+0.4
1,833,914	-				-1.2
1,833,981	+				-0.5
1,834,044	-				+0.7
1,834,120	+				+0.4
1,834,178	+				+0.3
1,834,178	+				-2.7
1,834,179	-				-1.6
1,834,179	-				+0.1
1,834,179	-				+0.4
1,834,179	-				-0.1
1,834,179	-				+0.4
1,834,179	-				+0.0
1,834,214	+				-1.3
1,834,215	-				-1.7
1,834,215	-				-0.5
1,834,228	+				+1.9
1,834,259	+				+0.1
1,834,260	-				+0.1
1,834,260	-				-0.5
1,834,279	+				-1.3
1,834,279	+				+0.7
1,834,279	+				-1.5
1,834,279	+				+0.1
1,834,280	-				-0.6
1,834,280	-				+0.1
1,834,280	-				+0.1
1,834,281	+				-0.1
1,834,281	+				+0.1
1,834,282	-				-0.4
1,834,288	+				-0.1
1,834,288	+				+0.3
1,834,289	-				-1.6
1,834,289	-				-1.4
1,834,289	-				-0.1
1,834,295	+				-1.3
1,834,295	+				+0.3
1,834,295	+				-0.7
1,834,296	-				-0.3
1,834,296	-				-0.6
1,834,333	+				+0.4
1,834,334	-				-1.0
1,834,338	+				+0.5
1,834,361	-				-1.3
1,834,361	-				-0.0
1,834,389	-				-0.9
1,834,389	-				-0.6
1,834,391	+				+0.6
1,834,419	+				-1.3
1,834,455	+				-0.5
1,834,455	+				-0.5
1,834,455	+				-0.0
1,834,455	+				-0.2
1,834,455	+				-0.9
1,834,482	-				-0.0
1,834,482	-				-0.5
1,834,482	-				-0.7
1,834,594	-		DDA3937_RS08090	0.18	-0.1
1,834,620	+		DDA3937_RS08090	0.21	-1.0
1,834,620	+		DDA3937_RS08090	0.21	-0.6
1,834,621	-		DDA3937_RS08090	0.21	-0.3
1,834,621	-		DDA3937_RS08090	0.21	-1.5
1,834,621	-		DDA3937_RS08090	0.21	-0.5
1,834,638	+		DDA3937_RS08090	0.23	-0.3
1,834,693	-		DDA3937_RS08090	0.29	-1.0
1,834,693	-		DDA3937_RS08090	0.29	-0.3
1,834,693	-				+0.7