Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08005

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,812,882	+				-0.8
1,812,882	+				-0.5
1,812,909	+				+0.7
1,812,909	+				-1.0
1,812,910	-				-0.1
1,812,910	-				+0.0
1,812,978	+				-0.3
1,812,979	-				+0.9
1,812,979	-				+1.6
1,812,979	-				-0.1
1,812,983	-				-0.4
1,812,992	+				+0.4
1,813,168	+		DDA3937_RS08000	0.23	-1.1
1,813,168	+		DDA3937_RS08000	0.23	-0.2
1,813,168	+		DDA3937_RS08000	0.23	+0.3
1,813,168	+		DDA3937_RS08000	0.23	+0.7
1,813,168	+		DDA3937_RS08000	0.23	+1.0
1,813,169	-		DDA3937_RS08000	0.23	+0.1
1,813,169	-		DDA3937_RS08000	0.23	+0.0
1,813,304	+		DDA3937_RS08000	0.40	-0.1
1,813,304	+		DDA3937_RS08000	0.40	-0.5
1,813,305	-		DDA3937_RS08000	0.40	+0.4
1,813,305	-		DDA3937_RS08000	0.40	-0.4
1,813,305	-		DDA3937_RS08000	0.40	+0.0
1,813,588	+		DDA3937_RS08000	0.75	+1.3
1,813,588	+		DDA3937_RS08000	0.75	+0.5
1,813,784	+				-1.1
1,813,785	-				+0.2
1,813,789	+				-0.3
1,813,790	-				-0.6
1,813,921	+				-0.2
1,813,921	+				-0.5
1,813,922	-				-0.1
1,813,992	+		DDA3937_RS08005	0.12	-0.3
1,813,992	+		DDA3937_RS08005	0.12	+1.3
1,813,992	+		DDA3937_RS08005	0.12	-1.4
1,813,993	-		DDA3937_RS08005	0.12	+0.4
1,814,043	-		DDA3937_RS08005	0.15	+0.9
1,814,419	+		DDA3937_RS08005	0.37	+0.4
1,814,419	+		DDA3937_RS08005	0.37	-1.5
1,814,453	+		DDA3937_RS08005	0.39	+0.0
1,814,678	+		DDA3937_RS08005	0.52	-1.1
1,814,678	+		DDA3937_RS08005	0.52	-1.4
1,814,679	-		DDA3937_RS08005	0.53	-0.2
1,814,785	+		DDA3937_RS08005	0.59	+0.2
1,814,810	+		DDA3937_RS08005	0.60	-2.1
1,814,810	+		DDA3937_RS08005	0.60	-1.8
1,814,811	-		DDA3937_RS08005	0.60	-1.1
1,814,891	+		DDA3937_RS08005	0.65	-0.4
1,814,983	+		DDA3937_RS08005	0.70	-1.4
1,814,984	-		DDA3937_RS08005	0.70	-0.5
1,815,039	+		DDA3937_RS08005	0.74	-0.3
1,815,045	-		DDA3937_RS08005	0.74	-2.3
1,815,045	-		DDA3937_RS08005	0.74	+0.9
1,815,045	-		DDA3937_RS08005	0.74	-1.3
1,815,083	+		DDA3937_RS08005	0.76	-0.3
1,815,170	+		DDA3937_RS08005	0.81	-1.0
1,815,170	+		DDA3937_RS08005	0.81	-1.2
1,815,361	+				+0.3
1,815,361	+				+1.0
1,815,361	+				+0.7
1,815,361	+				-2.4
1,815,361	+				+0.3
1,815,361	+				-0.7
1,815,361	+				-2.1
1,815,362	-				-1.6
1,815,362	-				+0.7
1,815,379	+				+0.7
1,815,379	+				+0.8
1,815,380	-				-0.3
1,815,426	-				+0.5
1,815,448	-				-0.7
1,815,460	+				+0.4
1,815,461	-				-0.3
1,815,461	-				+0.3
1,815,559	+				-0.4
1,815,654	-				-0.5
1,815,677	-				+1.1
1,815,691	-				+0.0
1,815,824	+		DDA3937_RS08010	0.18	-0.3
1,815,824	+		DDA3937_RS08010	0.18	-0.5
1,815,824	+		DDA3937_RS08010	0.18	-0.8
1,815,824	+		DDA3937_RS08010	0.18	+0.1
1,815,824	+		DDA3937_RS08010	0.18	+0.5
1,815,825	-		DDA3937_RS08010	0.18	+0.6
1,815,825	-		DDA3937_RS08010	0.18	-0.4
1,815,825	-		DDA3937_RS08010	0.18	+1.0
1,815,948	-		DDA3937_RS08010	0.29	-0.8
1,816,031	+		DDA3937_RS08010	0.37	-0.4
1,816,100	+		DDA3937_RS08010	0.43	+0.3
1,816,101	-		DDA3937_RS08010	0.43	+0.4
1,816,101	-		DDA3937_RS08010	0.43	+0.9
1,816,445	+		DDA3937_RS08010	0.75	-0.7
1,816,445	+		DDA3937_RS08010	0.75	-0.8
1,816,445	+		DDA3937_RS08010	0.75	-0.0
1,816,445	+		DDA3937_RS08010	0.75	-0.5
1,816,445	+		DDA3937_RS08010	0.75	-0.6
1,816,445	+				+0.2
1,816,445	+		DDA3937_RS08010	0.75	-0.4
1,816,446	-		DDA3937_RS08010	0.75	-0.3
1,816,446	-		DDA3937_RS08010	0.75	-0.8
1,816,446	-		DDA3937_RS08010	0.75	-0.3
1,816,446	-		DDA3937_RS08010	0.75	+0.7
1,816,447	+		DDA3937_RS08010	0.75	-1.8
1,816,448	-		DDA3937_RS08010	0.75	-0.1
1,816,448	-		DDA3937_RS08010	0.75	-0.6