Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05635

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,256,937	-				+2.0
1,256,939	+				+0.4
1,256,940	-				-0.2
1,256,940	-				+0.6
1,256,940	-				+0.6
1,256,945	+				+0.5
1,256,945	+				-1.0
1,256,945	+				-1.2
1,256,945	+				-0.3
1,256,945	+				-1.7
1,256,946	-				-0.0
1,256,946	-				-0.0
1,256,946	-				-0.8
1,256,958	+				-0.6
1,256,958	+				-0.0
1,256,958	+				-1.4
1,256,958	+				+2.6
1,256,958	+				+0.4
1,256,958	+				+0.1
1,256,959	-				-0.2
1,256,959	-				+0.2
1,257,000	-				-0.4
1,257,005	+				-0.2
1,257,006	-				+0.5
1,257,006	-				+0.3
1,257,006	-				+0.4
1,257,101	+				+2.5
1,257,127	-				+1.5
1,257,224	-				-0.3
1,257,229	+				+0.7
1,257,230	-				-0.6
1,257,247	-				+0.6
1,257,318	+		DDA3937_RS05630	0.28	-0.5
1,257,318	+		DDA3937_RS05630	0.28	+0.1
1,257,318	+		DDA3937_RS05630	0.28	-0.8
1,257,319	-		DDA3937_RS05630	0.28	-0.1
1,257,461	-		DDA3937_RS05630	0.73	+0.2
1,257,461	-		DDA3937_RS05630	0.73	-0.3
1,257,461	-		DDA3937_RS05630	0.73	+0.6
1,257,464	+		DDA3937_RS05630	0.74	-0.9
1,257,464	+		DDA3937_RS05630	0.74	+0.2
1,257,464	+		DDA3937_RS05630	0.74	-0.6
1,257,464	+		DDA3937_RS05630	0.74	-2.1
1,257,464	+		DDA3937_RS05630	0.74	-1.8
1,257,464	+		DDA3937_RS05630	0.74	-1.3
1,257,465	-		DDA3937_RS05630	0.75	+0.4
1,257,465	-		DDA3937_RS05630	0.75	+1.6
1,257,465	-		DDA3937_RS05630	0.75	-1.1
1,257,534	+				+0.1
1,257,535	-				-1.5
1,257,535	-				+0.5
1,257,553	-				+0.9
1,257,553	-				-1.4
1,257,679	-				+1.0
1,257,718	+				-1.0
1,257,719	-				-1.1
1,257,719	-				+0.2
1,257,720	+				-0.4
1,257,720	+				-0.3
1,257,720	+				-0.6
1,257,720	+				-0.0
1,257,721	-				-0.8
1,257,766	+				-0.8
1,257,766	+				-0.1
1,257,768	+				+1.0
1,257,768	+				+1.3
1,257,769	-				-1.8
1,257,843	-				+1.4
1,257,843	-				-2.2
1,258,003	+				+0.4
1,258,004	-				+0.6
1,258,015	+				-0.5
1,258,068	-		DDA3937_RS05635	0.13	-1.2
1,258,169	+		DDA3937_RS05635	0.21	-0.3
1,258,169	+		DDA3937_RS05635	0.21	+0.4
1,258,169	+		DDA3937_RS05635	0.21	-1.1
1,258,169	+		DDA3937_RS05635	0.21	-0.4
1,258,170	-		DDA3937_RS05635	0.21	-1.0
1,258,170	-		DDA3937_RS05635	0.21	-1.4
1,258,170	-		DDA3937_RS05635	0.21	-2.0
1,258,170	-		DDA3937_RS05635	0.21	-2.0
1,258,208	+		DDA3937_RS05635	0.24	-0.6
1,258,209	-		DDA3937_RS05635	0.24	-1.7
1,258,556	+		DDA3937_RS05635	0.51	+1.0
1,258,557	-		DDA3937_RS05635	0.51	-0.8
1,258,833	+		DDA3937_RS05635	0.72	-1.4
1,258,833	+		DDA3937_RS05635	0.72	-1.0
1,258,833	+		DDA3937_RS05635	0.72	-0.1
1,258,834	-		DDA3937_RS05635	0.72	-1.4
1,259,054	+		DDA3937_RS05635	0.89	+0.2
1,259,057	+		DDA3937_RS05635	0.89	-0.9
1,259,093	-				+1.0
1,259,146	-				-0.0
1,259,218	-				-1.0
1,259,218	-				-0.4
1,259,316	+				-1.8
1,259,317	-				-0.6
1,259,317	-				+0.1
1,259,322	+				-2.4
1,259,322	+				+0.0
1,259,322	+				+0.4
1,259,322	+				-0.3
1,259,323	-				-0.1
1,259,323	-				-0.3
1,259,323	-				-0.7
1,259,325	+				-0.8
1,259,332	+				+0.2
1,259,343	-				-0.1
1,259,417	+				+0.3
1,259,417	+				+0.4
1,259,417	+				+0.2
1,259,418	-				+1.4
1,259,418	-				+2.0
1,259,418	-				-1.0
1,259,418	-				-1.0
1,259,418	-				-0.8
1,259,418	-				-1.0
1,259,457	-				-0.4
1,259,463	+				-0.5
1,259,555	+				+0.6
1,259,555	+				+1.0
1,259,556	-				-1.7
1,259,556	-				-2.9
1,259,586	+				+0.2
1,259,587	-				-1.6
1,259,587	-				-1.5
1,259,587	-				-1.6
1,259,601	-				-0.0
1,259,608	+				-1.6
1,259,608	+				-2.3
1,259,608	+				-1.8
1,259,609	-				-0.6
1,259,609	-				-2.0
1,259,609	-				-1.4
1,259,609	-				-0.6
1,259,660	+				-2.3
1,259,661	-				-0.9
1,259,661	-				-2.2
1,259,661	-				-2.0
1,259,692	+		DDA3937_RS05640	0.14	-2.2
1,259,692	+		DDA3937_RS05640	0.14	+0.4
1,259,692	+		DDA3937_RS05640	0.14	-1.6
1,259,693	-		DDA3937_RS05640	0.15	-0.8
1,259,693	-		DDA3937_RS05640	0.15	-2.6
1,259,693	-		DDA3937_RS05640	0.15	-1.4
1,259,693	-		DDA3937_RS05640	0.15	-1.2
1,259,701	+		DDA3937_RS05640	0.16	-2.2
1,259,701	+		DDA3937_RS05640	0.16	-0.3
1,259,701	+		DDA3937_RS05640	0.16	-1.8
1,259,701	+		DDA3937_RS05640	0.16	-2.4
1,259,701	+		DDA3937_RS05640	0.16	-1.8
1,259,701	+		DDA3937_RS05640	0.16	+0.7
1,259,702	-		DDA3937_RS05640	0.16	-0.6
1,259,702	-		DDA3937_RS05640	0.16	-1.0
1,259,702	-		DDA3937_RS05640	0.16	-0.8
1,259,817	+		DDA3937_RS05640	0.34	-1.6
1,259,817	+		DDA3937_RS05640	0.34	-2.2
1,259,818	-		DDA3937_RS05640	0.35	-0.6
1,259,821	+		DDA3937_RS05640	0.35	-1.6
1,259,821	+		DDA3937_RS05640	0.35	-2.1
1,259,821	+				-0.4
1,259,821	+		DDA3937_RS05640	0.35	-0.3
1,259,821	+		DDA3937_RS05640	0.35	-1.6
1,259,821	+		DDA3937_RS05640	0.35	-1.8
1,259,821	+				-0.0
1,259,821	+		DDA3937_RS05640	0.35	-1.6
1,259,822	-		DDA3937_RS05640	0.35	-1.6
1,259,822	-		DDA3937_RS05640	0.35	-1.8
1,259,822	-				-0.6
1,259,822	-		DDA3937_RS05640	0.35	-0.6
1,259,822	-		DDA3937_RS05640	0.35	-2.6
1,259,822	-		DDA3937_RS05640	0.35	-0.6
1,259,827	+		DDA3937_RS05640	0.36	-1.4
1,259,827	+		DDA3937_RS05640	0.36	-0.0
1,259,827	+		DDA3937_RS05640	0.36	-1.6
1,259,827	+		DDA3937_RS05640	0.36	-1.4
1,259,828	-		DDA3937_RS05640	0.36	-0.4
1,259,832	+		DDA3937_RS05640	0.37	-1.0
1,259,832	+		DDA3937_RS05640	0.37	-2.8
1,259,833	-		DDA3937_RS05640	0.37	-1.3
1,259,833	-		DDA3937_RS05640	0.37	-1.0
1,259,833	-		DDA3937_RS05640	0.37	-1.5
1,259,833	-		DDA3937_RS05640	0.37	-1.8
1,259,872	+		DDA3937_RS05640	0.43	-2.0
1,259,872	+		DDA3937_RS05640	0.43	-2.2
1,259,872	+		DDA3937_RS05640	0.43	-1.2
1,259,889	+		DDA3937_RS05640	0.46	-0.6
1,259,916	+		DDA3937_RS05640	0.50	-2.0
1,259,917	-		DDA3937_RS05640	0.50	-0.6
1,260,111	+		DDA3937_RS05640	0.82	-1.0
1,260,111	+		DDA3937_RS05640	0.82	-0.0
1,260,112	-		DDA3937_RS05640	0.82	-1.0
1,260,134	+		DDA3937_RS05640	0.85	-1.0
1,260,183	-				-0.3
1,260,183	-				-1.7
1,260,183	-				-1.0
1,260,183	-				+2.0
1,260,187	+				-2.0
1,260,187	+				+1.0