Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05290

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,178,655	+		DDA3937_RS05285	0.29	+0.8
1,178,655	+		DDA3937_RS05285	0.29	-0.1
1,178,656	-		DDA3937_RS05285	0.29	+2.0
1,178,766	-		DDA3937_RS05285	0.39	+1.7
1,178,834	-		DDA3937_RS05285	0.46	+0.6
1,178,837	-		DDA3937_RS05285	0.46	-1.0
1,178,837	-		DDA3937_RS05285	0.46	-0.4
1,178,840	+		DDA3937_RS05285	0.46	-0.4
1,178,921	-		DDA3937_RS05285	0.54	-0.2
1,178,921	-		DDA3937_RS05285	0.54	-2.5
1,178,921	-		DDA3937_RS05285	0.54	-0.1
1,178,925	+		DDA3937_RS05285	0.54	-0.6
1,178,954	+		DDA3937_RS05285	0.57	+1.6
1,178,954	+		DDA3937_RS05285	0.57	-0.8
1,178,955	-		DDA3937_RS05285	0.57	+0.1
1,178,955	-		DDA3937_RS05285	0.57	+0.7
1,178,955	-		DDA3937_RS05285	0.57	-2.0
1,178,955	-		DDA3937_RS05285	0.57	+0.3
1,178,955	-		DDA3937_RS05285	0.57	-0.4
1,178,956	+				-1.6
1,178,957	-		DDA3937_RS05285	0.57	-0.1
1,178,987	+		DDA3937_RS05285	0.60	-0.7
1,179,239	-		DDA3937_RS05285	0.83	-0.8
1,179,314	+		DDA3937_RS05285	0.90	-1.6
1,179,319	+				-0.0
1,179,319	+				+1.0
1,179,319	+				-0.3
1,179,320	-				-0.3
1,179,330	+				-0.0
1,179,372	+				-0.4
1,179,393	+				-2.0
1,179,407	-				+0.6
1,179,415	-				-0.0
1,179,425	+				-0.9
1,179,430	+				-0.3
1,179,430	+				-1.3
1,179,430	+				+0.6
1,179,431	-				-0.6
1,179,431	-				-0.6
1,179,663	-		DDA3937_RS05290	0.34	+0.1
1,179,695	+		DDA3937_RS05290	0.39	-1.0
1,179,695	+		DDA3937_RS05290	0.39	-0.0
1,179,696	-		DDA3937_RS05290	0.39	+0.8
1,179,696	-		DDA3937_RS05290	0.39	+0.4
1,179,726	+		DDA3937_RS05290	0.43	+0.2
1,179,726	+		DDA3937_RS05290	0.43	+0.5
1,179,801	+		DDA3937_RS05290	0.54	+0.4
1,179,801	+		DDA3937_RS05290	0.54	+0.4
1,179,802	-		DDA3937_RS05290	0.54	-0.5
1,179,828	+		DDA3937_RS05290	0.58	-0.0
1,179,828	+		DDA3937_RS05290	0.58	+0.1
1,179,828	+		DDA3937_RS05290	0.58	+0.2
1,179,828	+		DDA3937_RS05290	0.58	-0.4
1,179,829	-		DDA3937_RS05290	0.58	-1.1
1,179,829	-		DDA3937_RS05290	0.58	+0.8
1,179,829	-		DDA3937_RS05290	0.58	-0.1
1,179,829	-		DDA3937_RS05290	0.58	-1.0
1,179,829	-		DDA3937_RS05290	0.58	-1.8
1,179,830	+		DDA3937_RS05290	0.59	-0.0
1,179,830	+		DDA3937_RS05290	0.59	-0.3
1,179,869	-		DDA3937_RS05290	0.64	-0.6
1,179,869	-		DDA3937_RS05290	0.64	+0.0
1,179,869	-		DDA3937_RS05290	0.64	-0.0
1,179,869	-		DDA3937_RS05290	0.64	+0.3
1,179,923	+		DDA3937_RS05290	0.72	-0.5
1,179,923	+		DDA3937_RS05290	0.72	-0.5
1,179,923	+		DDA3937_RS05290	0.72	-1.4
1,179,924	-		DDA3937_RS05290	0.72	-0.4
1,179,924	-		DDA3937_RS05290	0.72	-0.4
1,179,924	-		DDA3937_RS05290	0.72	-0.0
1,179,924	-		DDA3937_RS05290	0.72	+0.3
1,179,934	+		DDA3937_RS05290	0.74	+2.0
1,179,935	-		DDA3937_RS05290	0.74	+1.3
1,179,948	+		DDA3937_RS05290	0.76	+0.5
1,179,948	+		DDA3937_RS05290	0.76	+0.5
1,179,948	+		DDA3937_RS05290	0.76	-0.0
1,179,949	-		DDA3937_RS05290	0.76	+0.5
1,179,983	+		DDA3937_RS05290	0.81	+0.6
1,179,984	-		DDA3937_RS05290	0.81	+0.2
1,179,984	-		DDA3937_RS05290	0.81	-0.3
1,179,984	-		DDA3937_RS05290	0.81	-2.3
1,180,057	-				+0.1
1,180,061	-				-0.0
1,180,061	-				+0.6
1,180,080	+				-0.0
1,180,086	+				-0.5
1,180,099	+				-0.2
1,180,099	+				-0.7
1,180,177	+				-0.0
1,180,197	+				-0.5
1,180,197	+				+0.3
1,180,255	+				-1.3
1,180,256	-				-0.3
1,180,256	-				+2.3
1,180,259	+				-0.0
1,180,347	+				+0.7
1,180,372	-				-0.2
1,180,380	+				-0.3
1,180,380	+				-0.3
1,180,472	+				-2.6
1,180,473	-				-2.2
1,180,560	+		DDA3937_RS05295	0.11	-1.0
1,180,560	+		DDA3937_RS05295	0.11	+0.1
1,180,652	+		DDA3937_RS05295	0.16	-2.0
1,180,652	+				-0.6
1,180,652	+		DDA3937_RS05295	0.16	+0.8
1,180,652	+		DDA3937_RS05295	0.16	-0.3
1,180,653	-		DDA3937_RS05295	0.16	-0.6
1,180,653	-		DDA3937_RS05295	0.16	+0.1
1,180,655	-		DDA3937_RS05295	0.16	-1.8
1,180,655	-		DDA3937_RS05295	0.16	-0.7
1,180,701	+		DDA3937_RS05295	0.19	+0.8
1,180,702	-		DDA3937_RS05295	0.19	-1.2
1,180,707	+		DDA3937_RS05295	0.19	-0.5
1,180,741	+		DDA3937_RS05295	0.21	-1.0
1,180,754	+		DDA3937_RS05295	0.22	-1.0
1,180,754	+		DDA3937_RS05295	0.22	+0.1
1,180,754	+		DDA3937_RS05295	0.22	-1.0
1,180,777	+		DDA3937_RS05295	0.23	+0.2
1,180,777	+		DDA3937_RS05295	0.23	-1.3
1,180,777	+		DDA3937_RS05295	0.23	-0.6
1,180,777	+		DDA3937_RS05295	0.23	-2.6
1,180,777	+		DDA3937_RS05295	0.23	-0.0
1,180,778	-		DDA3937_RS05295	0.23	-0.6
1,180,778	-		DDA3937_RS05295	0.23	-0.2
1,180,778	-		DDA3937_RS05295	0.23	-0.1
1,180,778	-		DDA3937_RS05295	0.23	-0.9
1,180,778	-		DDA3937_RS05295	0.23	-0.3
1,180,779	+		DDA3937_RS05295	0.23	+1.0
1,180,780	-		DDA3937_RS05295	0.23	-0.0
1,180,780	-		DDA3937_RS05295	0.23	-0.3
1,180,780	-		DDA3937_RS05295	0.23	-0.0
1,180,780	-		DDA3937_RS05295	0.23	-1.0
1,180,840	-		DDA3937_RS05295	0.27	+1.7
1,180,865	+		DDA3937_RS05295	0.28	-0.1
1,180,870	+		DDA3937_RS05295	0.28	+0.7
1,180,871	-		DDA3937_RS05295	0.28	-0.8
1,180,948	+		DDA3937_RS05295	0.33	-1.8
1,180,949	-		DDA3937_RS05295	0.33	-1.6
1,180,949	-		DDA3937_RS05295	0.33	+0.9
1,180,954	+		DDA3937_RS05295	0.33	+0.8
1,180,954	+		DDA3937_RS05295	0.33	-0.0
1,180,955	-		DDA3937_RS05295	0.33	-0.7
1,180,955	-		DDA3937_RS05295	0.33	+0.3
1,180,956	+		DDA3937_RS05295	0.33	-0.0
1,180,993	-		DDA3937_RS05295	0.35	+0.2
1,181,002	+		DDA3937_RS05295	0.36	-0.8
1,181,002	+		DDA3937_RS05295	0.36	-0.6
1,181,002	+		DDA3937_RS05295	0.36	+0.1
1,181,003	-		DDA3937_RS05295	0.36	-1.6
1,181,003	-		DDA3937_RS05295	0.36	+0.1
1,181,003	-		DDA3937_RS05295	0.36	-2.3
1,181,029	+		DDA3937_RS05295	0.37	-0.1
1,181,041	+		DDA3937_RS05295	0.38	+0.4
1,181,042	-		DDA3937_RS05295	0.38	+0.0