Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05155 and DDA3937_RS05160 are separated by 140 nucleotides DDA3937_RS05160 and DDA3937_RS05165 are separated by 3 nucleotides
DDA3937_RS05155: DDA3937_RS05155 - outer membrane protein assembly factor BamA, at 1,149,933 to 1,152,350
_RS05155
DDA3937_RS05160: DDA3937_RS05160 - molecular chaperone Skp, at 1,152,491 to 1,152,988
_RS05160
DDA3937_RS05165: DDA3937_RS05165 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,152,992 to 1,154,014
_RS05165
Position (kb)
1152
1153 Strain fitness (log2 ratio)
-2
-1
0
1 at 1152.388 kb on + strand at 1152.388 kb on + strand at 1152.416 kb on + strand at 1152.416 kb on + strand at 1152.416 kb on + strand at 1152.416 kb on + strand at 1152.418 kb on + strand at 1152.418 kb on + strand at 1152.418 kb on + strand at 1152.418 kb on + strand at 1152.468 kb on + strand at 1152.472 kb on + strand at 1152.472 kb on + strand at 1152.472 kb on + strand at 1152.506 kb on + strand at 1152.625 kb on + strand, within DDA3937_RS05160 at 1152.724 kb on + strand, within DDA3937_RS05160 at 1152.902 kb on + strand, within DDA3937_RS05160 at 1152.935 kb on + strand, within DDA3937_RS05160
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,152,388 + +0.4 1,152,388 + -0.2 1,152,416 + -0.2 1,152,416 + +1.0 1,152,416 + -0.6 1,152,416 + +0.1 1,152,418 + +0.5 1,152,418 + +0.7 1,152,418 + +0.0 1,152,418 + +0.9 1,152,468 + -1.0 1,152,472 + -0.3 1,152,472 + -0.3 1,152,472 + +0.2 1,152,506 + -0.6 1,152,625 + DDA3937_RS05160 0.27 -2.4 1,152,724 + DDA3937_RS05160 0.47 -1.8 1,152,902 + DDA3937_RS05160 0.83 -2.2 1,152,935 + DDA3937_RS05160 0.89 -2.7
Or see this region's nucleotide sequence