Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04945

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,108,065	+		DDA3937_RS04940	0.68	+0.1
1,108,065	+		DDA3937_RS04940	0.68	-0.4
1,108,065	+		DDA3937_RS04940	0.68	+0.3
1,108,065	+		DDA3937_RS04940	0.68	-0.2
1,108,331	-				-1.9
1,108,484	+				+0.4
1,108,484	+				+0.6
1,108,485	-				+0.4
1,108,485	-				+0.1
1,108,546	+				+2.0
1,108,546	+				-1.4
1,108,546	+				-1.0
1,108,546	+				-1.1
1,108,546	+				+0.5
1,108,546	+				-0.3
1,108,546	+				+0.4
1,108,546	+				-0.1
1,108,546	+				-0.1
1,108,546	+				+1.3
1,108,546	+				-0.1
1,108,546	+				-0.2
1,108,546	+				-0.4
1,108,546	+				-0.9
1,108,546	+				-0.2
1,108,546	+				+0.5
1,108,546	+				+0.2
1,108,546	+				+1.0
1,108,546	+				-1.6
1,108,546	+				-0.1
1,108,546	+				-0.3
1,108,546	+				-0.5
1,108,546	+				+0.6
1,108,546	+				+0.2
1,108,547	-				-0.6
1,108,547	-				-0.3
1,108,547	-				+1.3
1,108,547	-				-0.7
1,108,547	-				+1.8
1,108,547	-				-1.3
1,108,547	-				+0.0
1,108,547	-				-1.3
1,108,547	-				+0.1
1,108,547	-				+0.8
1,108,547	-				-0.3
1,108,547	-				-0.3
1,108,547	-				-0.3
1,108,547	-				+0.4
1,108,547	-				+0.2
1,108,547	-				-0.4
1,108,547	-				+0.5
1,108,778	-				-0.6
1,108,859	+				+0.0
1,108,871	+				-0.3
1,108,872	-				-0.9
1,108,981	+				-0.7
1,108,981	+				-0.7
1,108,981	+				-0.6
1,108,982	-				-0.1
1,108,982	-				-1.1
1,108,982	-				-1.1
1,108,982	-				-0.6
1,108,982	-				-2.8
1,109,039	+				+0.2
1,109,039	+				-0.0
1,109,039	+				+2.0
1,109,040	-				-1.0
1,109,040	-				-1.4
1,109,040	-				-2.1
1,109,040	-				-1.2
1,109,040	-				-0.8
1,109,052	+				-0.7
1,109,052	+				+0.8
1,109,095	-				-2.8
1,109,095	-				+0.0
1,109,099	+				+0.2
1,109,099	+				-1.6
1,109,100	-				-0.4
1,109,100	-				-1.3
1,109,100	-				-1.6
1,109,100	-				-1.3
1,109,100	-				-0.3
1,109,123	+		DDA3937_RS04945	0.12	-2.0
1,109,124	-		DDA3937_RS04945	0.12	+1.8
1,109,124	-		DDA3937_RS04945	0.12	-1.0
1,109,210	-		DDA3937_RS04945	0.29	-3.5
1,109,282	+		DDA3937_RS04945	0.42	-1.0
1,109,282	+		DDA3937_RS04945	0.42	-0.4
1,109,287	+		DDA3937_RS04945	0.43	-0.6
1,109,289	+		DDA3937_RS04945	0.44	-1.1
1,109,290	-		DDA3937_RS04945	0.44	-1.6
1,109,290	-		DDA3937_RS04945	0.44	-1.0
1,109,320	-		DDA3937_RS04945	0.49	-1.3
1,109,320	-		DDA3937_RS04945	0.49	-0.3
1,109,330	+		DDA3937_RS04945	0.51	+0.3
1,109,334	+		DDA3937_RS04945	0.52	-1.8
1,109,334	+		DDA3937_RS04945	0.52	-1.0
1,109,335	-		DDA3937_RS04945	0.52	+0.4
1,109,335	-		DDA3937_RS04945	0.52	-0.6
1,109,335	-		DDA3937_RS04945	0.52	-1.6
1,109,335	-		DDA3937_RS04945	0.52	+0.4
1,109,369	+		DDA3937_RS04945	0.59	-0.6
1,109,369	+		DDA3937_RS04945	0.59	+0.3
1,109,369	+		DDA3937_RS04945	0.59	+0.3
1,109,370	-		DDA3937_RS04945	0.59	-0.4
1,109,370	-		DDA3937_RS04945	0.59	-1.3
1,109,370	-		DDA3937_RS04945	0.59	-0.3
1,109,370	-		DDA3937_RS04945	0.59	-0.3
1,109,370	-		DDA3937_RS04945	0.59	-0.1
1,109,376	+		DDA3937_RS04945	0.60	-1.7
1,109,443	+		DDA3937_RS04945	0.73	-1.0
1,109,443	+		DDA3937_RS04945	0.73	-2.3
1,109,443	+		DDA3937_RS04945	0.73	-1.0
1,109,443	+		DDA3937_RS04945	0.73	-0.4
1,109,443	+		DDA3937_RS04945	0.73	-1.6
1,109,450	-		DDA3937_RS04945	0.74	+0.4
1,109,531	+		DDA3937_RS04945	0.89	-0.4
1,109,531	+		DDA3937_RS04945	0.89	-1.4
1,109,531	+		DDA3937_RS04945	0.89	-0.1
1,109,532	-		DDA3937_RS04945	0.90	-1.7
1,109,532	-		DDA3937_RS04945	0.90	-2.0
1,109,556	-				-2.3
1,109,721	+				+1.9
1,109,722	-				+0.4
1,109,722	-				-1.3
1,109,748	+				+0.6
1,109,749	-				+1.3
1,109,749	-				+1.0
1,109,749	-				-1.8
1,109,751	+				+0.3
1,109,751	+				+1.0
1,109,798	+				-1.8
1,109,798	+				+0.5
1,109,799	-				-0.6
1,110,334	-		DDA3937_RS04950	0.33	-1.1
1,110,469	-		DDA3937_RS04950	0.39	-0.6