Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04825

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,074,312	+				+0.2
1,074,313	-				-0.8
1,074,313	-				-0.2
1,074,316	+				+1.9
1,074,316	+				-1.8
1,074,316	+				-0.1
1,074,317	-				+0.3
1,074,379	+				+0.7
1,074,379	+				+0.1
1,074,380	-				-0.4
1,074,380	-				-1.3
1,074,380	-				-2.1
1,074,385	+				-1.1
1,074,457	+				-0.7
1,074,457	+				-0.6
1,074,530	-				-0.6
1,074,532	+				+0.2
1,074,532	+				-0.1
1,074,532	+				+0.0
1,074,533	-				+0.7
1,074,533	-				-0.1
1,074,533	-				-1.0
1,074,536	+				-0.6
1,074,536	+				-2.0
1,074,537	-				-0.6
1,074,537	-				-1.1
1,074,537	-				-0.1
1,074,599	+				+0.2
1,074,600	-				-0.2
1,074,612	+		DDA3937_RS04820	0.15	-1.1
1,074,744	+		DDA3937_RS04820	0.88	-0.6
1,074,745	-		DDA3937_RS04820	0.89	-0.6
1,074,745	-		DDA3937_RS04820	0.89	+0.0
1,074,745	-		DDA3937_RS04820	0.89	+0.1
1,074,799	-				+0.3
1,074,817	+				-0.1
1,074,862	+				-0.4
1,074,862	+				-1.3
1,074,862	+				-2.1
1,074,862	+				+0.6
1,074,862	+				+0.8
1,074,883	+				+0.0
1,074,884	-				+0.4
1,075,093	+				-0.5
1,075,094	-				-1.6
1,075,102	+				+0.2
1,075,103	-				+0.3
1,075,217	+				+0.3
1,075,217	+				+0.4
1,075,218	-				+1.0
1,075,221	+				-0.4
1,075,221	+				+0.6
1,075,222	-				+0.5
1,075,222	-				-0.6
1,075,236	+				+1.8
1,075,237	-				-0.1
1,075,237	-				+0.2
1,075,348	-		DDA3937_RS04825	0.11	-0.5
1,075,438	+		DDA3937_RS04825	0.19	-1.2
1,075,439	-		DDA3937_RS04825	0.19	-0.1
1,075,439	-		DDA3937_RS04825	0.19	+0.8
1,075,439	-		DDA3937_RS04825	0.19	-0.1
1,075,535	+		DDA3937_RS04825	0.27	-0.2
1,075,535	+		DDA3937_RS04825	0.27	+0.4
1,075,535	+		DDA3937_RS04825	0.27	-0.2
1,075,535	+		DDA3937_RS04825	0.27	-0.4
1,075,536	-		DDA3937_RS04825	0.27	-1.4
1,075,536	-		DDA3937_RS04825	0.27	-0.6
1,075,539	+		DDA3937_RS04825	0.27	-0.2
1,075,539	+		DDA3937_RS04825	0.27	-1.3
1,075,540	-		DDA3937_RS04825	0.28	+0.3
1,075,561	+		DDA3937_RS04825	0.29	-0.1
1,075,578	-		DDA3937_RS04825	0.31	-0.2
1,075,578	-		DDA3937_RS04825	0.31	-2.1
1,075,581	+		DDA3937_RS04825	0.31	-0.8
1,075,581	+		DDA3937_RS04825	0.31	-0.2
1,075,581	+		DDA3937_RS04825	0.31	-0.8
1,075,581	+		DDA3937_RS04825	0.31	+0.9
1,075,582	-		DDA3937_RS04825	0.31	-0.5
1,075,582	-		DDA3937_RS04825	0.31	-1.1
1,075,582	-		DDA3937_RS04825	0.31	-1.8
1,075,582	-		DDA3937_RS04825	0.31	-1.0
1,075,644	+		DDA3937_RS04825	0.37	+0.0
1,075,645	-		DDA3937_RS04825	0.37	-2.4
1,075,645	-		DDA3937_RS04825	0.37	-1.2
1,075,673	+		DDA3937_RS04825	0.39	+0.5
1,075,674	-		DDA3937_RS04825	0.39	-1.0
1,075,702	+		DDA3937_RS04825	0.42	+0.4
1,075,702	+		DDA3937_RS04825	0.42	+0.5
1,075,702	+		DDA3937_RS04825	0.42	+0.0
1,075,702	+		DDA3937_RS04825	0.42	-2.0
1,075,703	-				+2.8
1,075,704	+		DDA3937_RS04825	0.42	-0.2
1,075,704	+		DDA3937_RS04825	0.42	+0.0
1,075,704	+		DDA3937_RS04825	0.42	+1.2
1,075,704	+		DDA3937_RS04825	0.42	-1.3
1,075,705	-		DDA3937_RS04825	0.42	-0.2
1,075,705	-		DDA3937_RS04825	0.42	-0.4
1,075,726	-		DDA3937_RS04825	0.44	-1.1
1,075,750	+		DDA3937_RS04825	0.46	-2.1
1,075,843	+		DDA3937_RS04825	0.54	+0.2
1,075,843	+		DDA3937_RS04825	0.54	-0.6
1,075,844	-		DDA3937_RS04825	0.54	-0.7
1,075,844	-		DDA3937_RS04825	0.54	-0.2
1,075,844	-		DDA3937_RS04825	0.54	-2.1
1,075,844	-		DDA3937_RS04825	0.54	-1.2
1,075,844	-		DDA3937_RS04825	0.54	-1.1
1,075,861	+		DDA3937_RS04825	0.56	+0.4
1,075,917	+		DDA3937_RS04825	0.61	-0.3
1,075,994	+		DDA3937_RS04825	0.67	-0.8
1,075,995	-		DDA3937_RS04825	0.67	-0.3
1,075,995	-		DDA3937_RS04825	0.67	-1.6
1,075,996	+		DDA3937_RS04825	0.67	+0.4
1,075,996	+		DDA3937_RS04825	0.67	-2.0
1,075,997	-		DDA3937_RS04825	0.68	-0.3
1,075,997	-		DDA3937_RS04825	0.68	+0.0
1,076,000	+				-0.3
1,076,001	-		DDA3937_RS04825	0.68	+0.0
1,076,156	+		DDA3937_RS04825	0.81	-0.2
1,076,192	+		DDA3937_RS04825	0.85	+0.3
1,076,221	+		DDA3937_RS04825	0.87	-1.6
1,076,404	+				-1.0
1,076,404	+				-0.4
1,076,471	+				-0.4
1,076,611	+				+0.4
1,076,615	+		DDA3937_RS04830	0.11	+0.0
1,076,622	+		DDA3937_RS04830	0.12	-1.6
1,076,623	-		DDA3937_RS04830	0.12	-0.6
1,076,688	-		DDA3937_RS04830	0.24	+0.5
1,076,782	-		DDA3937_RS04830	0.41	-0.2
1,076,898	+				+0.6
1,076,926	-		DDA3937_RS04830	0.68	-1.4
1,076,926	-		DDA3937_RS04830	0.68	-0.7
1,077,000	+		DDA3937_RS04830	0.81	-0.0
1,077,110	+				+0.4
1,077,186	-				-1.4
1,077,186	-				+0.4
1,077,274	-				-0.5