Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04705

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS04700 and DDA3937_RS04705 are separated by 385 nucleotidesDDA3937_RS04705 and DDA3937_RS04710 are separated by 411 nucleotides DDA3937_RS04700: DDA3937_RS04700 - hypothetical protein, at 1,035,533 to 1,036,357 _RS04700 DDA3937_RS04705: DDA3937_RS04705 - SDR family oxidoreductase, at 1,036,743 to 1,037,852 _RS04705 DDA3937_RS04710: DDA3937_RS04710 - MipA/OmpV family protein, at 1,038,264 to 1,039,049 _RS04710 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1035.743 kb on - strand, within DDA3937_RS04700at 1035.752 kb on + strand, within DDA3937_RS04700at 1035.764 kb on + strand, within DDA3937_RS04700at 1035.764 kb on + strand, within DDA3937_RS04700at 1035.764 kb on + strand, within DDA3937_RS04700at 1035.764 kb on + strand, within DDA3937_RS04700at 1035.764 kb on + strand, within DDA3937_RS04700at 1035.764 kb on + strand, within DDA3937_RS04700at 1035.765 kb on - strand, within DDA3937_RS04700at 1035.765 kb on - strand, within DDA3937_RS04700at 1035.765 kb on - strand, within DDA3937_RS04700at 1035.857 kb on - strandat 1035.964 kb on + strand, within DDA3937_RS04700at 1035.965 kb on - strand, within DDA3937_RS04700at 1036.045 kb on + strand, within DDA3937_RS04700at 1036.046 kb on - strand, within DDA3937_RS04700at 1036.057 kb on + strandat 1036.058 kb on - strand, within DDA3937_RS04700at 1036.136 kb on + strand, within DDA3937_RS04700at 1036.136 kb on + strand, within DDA3937_RS04700at 1036.136 kb on + strand, within DDA3937_RS04700at 1036.136 kb on + strand, within DDA3937_RS04700at 1036.137 kb on - strand, within DDA3937_RS04700at 1036.137 kb on - strand, within DDA3937_RS04700at 1036.137 kb on - strand, within DDA3937_RS04700at 1036.166 kb on + strand, within DDA3937_RS04700at 1036.166 kb on + strand, within DDA3937_RS04700at 1036.166 kb on + strand, within DDA3937_RS04700at 1036.166 kb on + strand, within DDA3937_RS04700at 1036.166 kb on + strand, within DDA3937_RS04700at 1036.167 kb on - strand, within DDA3937_RS04700at 1036.167 kb on - strand, within DDA3937_RS04700at 1036.167 kb on - strand, within DDA3937_RS04700at 1036.167 kb on - strand, within DDA3937_RS04700at 1036.167 kb on - strand, within DDA3937_RS04700at 1036.167 kb on - strand, within DDA3937_RS04700at 1036.295 kb on + strandat 1036.295 kb on + strandat 1036.295 kb on + strandat 1036.295 kb on + strandat 1036.296 kb on - strandat 1036.296 kb on - strandat 1036.296 kb on - strandat 1036.296 kb on - strandat 1036.296 kb on - strandat 1036.296 kb on - strandat 1036.373 kb on + strandat 1036.505 kb on + strandat 1036.606 kb on + strandat 1036.621 kb on - strandat 1036.651 kb on - strandat 1036.687 kb on + strandat 1036.687 kb on + strandat 1036.688 kb on - strandat 1036.692 kb on - strandat 1036.692 kb on - strandat 1036.719 kb on - strandat 1036.745 kb on - strandat 1036.745 kb on - strandat 1036.813 kb on + strandat 1036.813 kb on + strandat 1036.813 kb on + strandat 1036.813 kb on + strandat 1036.900 kb on + strand, within DDA3937_RS04705at 1036.901 kb on - strand, within DDA3937_RS04705at 1036.901 kb on - strand, within DDA3937_RS04705at 1036.945 kb on + strand, within DDA3937_RS04705at 1036.946 kb on - strand, within DDA3937_RS04705at 1036.987 kb on + strand, within DDA3937_RS04705at 1036.988 kb on - strand, within DDA3937_RS04705at 1036.988 kb on - strand, within DDA3937_RS04705at 1037.002 kb on + strand, within DDA3937_RS04705at 1037.003 kb on - strand, within DDA3937_RS04705at 1037.093 kb on + strand, within DDA3937_RS04705at 1037.093 kb on + strand, within DDA3937_RS04705at 1037.093 kb on + strand, within DDA3937_RS04705at 1037.094 kb on - strand, within DDA3937_RS04705at 1037.094 kb on - strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strandat 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.098 kb on + strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.099 kb on - strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.102 kb on + strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.103 kb on - strand, within DDA3937_RS04705at 1037.180 kb on + strand, within DDA3937_RS04705at 1037.236 kb on + strand, within DDA3937_RS04705at 1037.236 kb on + strand, within DDA3937_RS04705at 1037.236 kb on + strand, within DDA3937_RS04705at 1037.236 kb on + strand, within DDA3937_RS04705at 1037.237 kb on - strand, within DDA3937_RS04705at 1037.237 kb on - strand, within DDA3937_RS04705at 1037.255 kb on + strand, within DDA3937_RS04705at 1037.255 kb on + strand, within DDA3937_RS04705at 1037.255 kb on + strand, within DDA3937_RS04705at 1037.255 kb on + strand, within DDA3937_RS04705at 1037.255 kb on + strand, within DDA3937_RS04705at 1037.365 kb on + strand, within DDA3937_RS04705at 1037.365 kb on + strand, within DDA3937_RS04705at 1037.366 kb on - strand, within DDA3937_RS04705at 1037.580 kb on - strand, within DDA3937_RS04705at 1037.580 kb on - strand, within DDA3937_RS04705at 1037.648 kb on + strand, within DDA3937_RS04705at 1037.648 kb on + strand, within DDA3937_RS04705at 1037.649 kb on - strand, within DDA3937_RS04705at 1037.652 kb on - strand, within DDA3937_RS04705at 1037.652 kb on - strand, within DDA3937_RS04705at 1037.674 kb on - strand, within DDA3937_RS04705at 1037.700 kb on - strand, within DDA3937_RS04705at 1037.708 kb on + strand, within DDA3937_RS04705at 1037.738 kb on + strand, within DDA3937_RS04705at 1037.738 kb on + strand, within DDA3937_RS04705at 1037.738 kb on + strand, within DDA3937_RS04705at 1037.759 kb on + strandat 1037.759 kb on + strandat 1037.760 kb on - strandat 1037.802 kb on - strandat 1037.842 kb on - strandat 1037.858 kb on + strandat 1037.924 kb on - strandat 1037.969 kb on - strandat 1037.988 kb on + strandat 1038.265 kb on + strandat 1038.272 kb on + strandat 1038.272 kb on + strandat 1038.273 kb on - strandat 1038.273 kb on - strandat 1038.273 kb on - strandat 1038.273 kb on - strandat 1038.273 kb on - strandat 1038.274 kb on + strandat 1038.274 kb on + strandat 1038.274 kb on + strandat 1038.274 kb on + strandat 1038.274 kb on + strandat 1038.274 kb on + strandat 1038.275 kb on - strandat 1038.275 kb on - strandat 1038.278 kb on + strandat 1038.278 kb on + strandat 1038.278 kb on + strandat 1038.278 kb on + strandat 1038.278 kb on + strandat 1038.279 kb on - strandat 1038.339 kb on - strandat 1038.354 kb on - strand, within DDA3937_RS04710at 1038.355 kb on + strand, within DDA3937_RS04710at 1038.355 kb on + strand, within DDA3937_RS04710at 1038.355 kb on + strand, within DDA3937_RS04710at 1038.355 kb on + strand, within DDA3937_RS04710at 1038.355 kb on + strand, within DDA3937_RS04710at 1038.356 kb on - strand, within DDA3937_RS04710at 1038.356 kb on - strand, within DDA3937_RS04710at 1038.356 kb on - strand, within DDA3937_RS04710at 1038.356 kb on - strand, within DDA3937_RS04710at 1038.494 kb on - strand, within DDA3937_RS04710at 1038.506 kb on + strand, within DDA3937_RS04710at 1038.506 kb on + strand, within DDA3937_RS04710at 1038.506 kb on + strand, within DDA3937_RS04710at 1038.507 kb on - strand, within DDA3937_RS04710at 1038.507 kb on - strand, within DDA3937_RS04710at 1038.507 kb on - strand, within DDA3937_RS04710at 1038.507 kb on - strand, within DDA3937_RS04710at 1038.507 kb on - strand, within DDA3937_RS04710at 1038.508 kb on + strand, within DDA3937_RS04710at 1038.509 kb on - strand, within DDA3937_RS04710at 1038.659 kb on + strand, within DDA3937_RS04710at 1038.797 kb on - strand, within DDA3937_RS04710at 1038.820 kb on + strand, within DDA3937_RS04710at 1038.821 kb on - strand, within DDA3937_RS04710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,035,743 - DDA3937_RS04700 0.25 +0.0
1,035,752 + DDA3937_RS04700 0.27 -1.3
1,035,764 + DDA3937_RS04700 0.28 -0.3
1,035,764 + DDA3937_RS04700 0.28 +0.1
1,035,764 + DDA3937_RS04700 0.28 +0.8
1,035,764 + DDA3937_RS04700 0.28 -0.4
1,035,764 + DDA3937_RS04700 0.28 +0.0
1,035,764 + DDA3937_RS04700 0.28 -1.1
1,035,765 - DDA3937_RS04700 0.28 -0.9
1,035,765 - DDA3937_RS04700 0.28 -0.5
1,035,765 - DDA3937_RS04700 0.28 -0.0
1,035,857 - +2.0
1,035,964 + DDA3937_RS04700 0.52 -0.9
1,035,965 - DDA3937_RS04700 0.52 +0.3
1,036,045 + DDA3937_RS04700 0.62 +0.2
1,036,046 - DDA3937_RS04700 0.62 +1.4
1,036,057 + +1.0
1,036,058 - DDA3937_RS04700 0.64 +0.6
1,036,136 + DDA3937_RS04700 0.73 -0.3
1,036,136 + DDA3937_RS04700 0.73 -0.3
1,036,136 + DDA3937_RS04700 0.73 -0.2
1,036,136 + DDA3937_RS04700 0.73 -0.8
1,036,137 - DDA3937_RS04700 0.73 -2.6
1,036,137 - DDA3937_RS04700 0.73 +0.2
1,036,137 - DDA3937_RS04700 0.73 -1.1
1,036,166 + DDA3937_RS04700 0.77 -0.1
1,036,166 + DDA3937_RS04700 0.77 -1.2
1,036,166 + DDA3937_RS04700 0.77 -0.5
1,036,166 + DDA3937_RS04700 0.77 +0.8
1,036,166 + DDA3937_RS04700 0.77 -0.6
1,036,167 - DDA3937_RS04700 0.77 -0.7
1,036,167 - DDA3937_RS04700 0.77 +1.6
1,036,167 - DDA3937_RS04700 0.77 -2.4
1,036,167 - DDA3937_RS04700 0.77 -0.5
1,036,167 - DDA3937_RS04700 0.77 -1.5
1,036,167 - DDA3937_RS04700 0.77 -0.6
1,036,295 + -0.2
1,036,295 + +0.3
1,036,295 + +0.8
1,036,295 + -0.1
1,036,296 - +2.0
1,036,296 - -1.4
1,036,296 - -1.3
1,036,296 - +0.1
1,036,296 - -1.0
1,036,296 - -1.8
1,036,373 + -0.3
1,036,505 + +0.6
1,036,606 + -0.2
1,036,621 - -1.0
1,036,651 - -0.1
1,036,687 + -0.1
1,036,687 + -1.2
1,036,688 - -2.0
1,036,692 - -0.2
1,036,692 - -0.0
1,036,719 - -1.6
1,036,745 - +0.8
1,036,745 - +0.4
1,036,813 + -0.8
1,036,813 + -2.4
1,036,813 + -0.9
1,036,813 + -0.0
1,036,900 + DDA3937_RS04705 0.14 -1.1
1,036,901 - DDA3937_RS04705 0.14 -0.3
1,036,901 - DDA3937_RS04705 0.14 -0.0
1,036,945 + DDA3937_RS04705 0.18 -0.2
1,036,946 - DDA3937_RS04705 0.18 -0.0
1,036,987 + DDA3937_RS04705 0.22 +0.2
1,036,988 - DDA3937_RS04705 0.22 -0.6
1,036,988 - DDA3937_RS04705 0.22 -0.8
1,037,002 + DDA3937_RS04705 0.23 -0.8
1,037,003 - DDA3937_RS04705 0.23 -2.0
1,037,093 + DDA3937_RS04705 0.32 -0.4
1,037,093 + DDA3937_RS04705 0.32 -1.1
1,037,093 + DDA3937_RS04705 0.32 -1.3
1,037,094 - DDA3937_RS04705 0.32 -0.7
1,037,094 - DDA3937_RS04705 0.32 +1.4
1,037,098 + DDA3937_RS04705 0.32 -0.7
1,037,098 + DDA3937_RS04705 0.32 -1.0
1,037,098 + DDA3937_RS04705 0.32 -1.4
1,037,098 + DDA3937_RS04705 0.32 -1.2
1,037,098 + +1.0
1,037,098 + DDA3937_RS04705 0.32 +0.8
1,037,098 + DDA3937_RS04705 0.32 -1.6
1,037,098 + DDA3937_RS04705 0.32 +0.2
1,037,098 + DDA3937_RS04705 0.32 -0.3
1,037,098 + DDA3937_RS04705 0.32 -0.6
1,037,098 + DDA3937_RS04705 0.32 -1.6
1,037,099 - DDA3937_RS04705 0.32 -0.4
1,037,099 - DDA3937_RS04705 0.32 -0.1
1,037,099 - DDA3937_RS04705 0.32 -1.8
1,037,099 - DDA3937_RS04705 0.32 -0.4
1,037,099 - DDA3937_RS04705 0.32 +0.1
1,037,099 - DDA3937_RS04705 0.32 +1.0
1,037,099 - DDA3937_RS04705 0.32 -1.8
1,037,099 - DDA3937_RS04705 0.32 -0.3
1,037,099 - DDA3937_RS04705 0.32 -1.1
1,037,102 + DDA3937_RS04705 0.32 -0.7
1,037,102 + DDA3937_RS04705 0.32 +0.4
1,037,102 + DDA3937_RS04705 0.32 -1.1
1,037,102 + DDA3937_RS04705 0.32 +0.0
1,037,102 + DDA3937_RS04705 0.32 -0.6
1,037,102 + DDA3937_RS04705 0.32 +0.5
1,037,102 + DDA3937_RS04705 0.32 +0.2
1,037,103 - DDA3937_RS04705 0.32 -1.8
1,037,103 - DDA3937_RS04705 0.32 -0.6
1,037,103 - DDA3937_RS04705 0.32 +0.5
1,037,103 - DDA3937_RS04705 0.32 -0.1
1,037,103 - DDA3937_RS04705 0.32 -1.6
1,037,103 - DDA3937_RS04705 0.32 -1.5
1,037,103 - DDA3937_RS04705 0.32 +1.8
1,037,180 + DDA3937_RS04705 0.39 -1.7
1,037,236 + DDA3937_RS04705 0.44 -0.1
1,037,236 + DDA3937_RS04705 0.44 -0.4
1,037,236 + DDA3937_RS04705 0.44 -0.3
1,037,236 + DDA3937_RS04705 0.44 -1.3
1,037,237 - DDA3937_RS04705 0.45 -0.6
1,037,237 - DDA3937_RS04705 0.45 -0.6
1,037,255 + DDA3937_RS04705 0.46 -0.4
1,037,255 + DDA3937_RS04705 0.46 -0.3
1,037,255 + DDA3937_RS04705 0.46 +0.0
1,037,255 + DDA3937_RS04705 0.46 +0.3
1,037,255 + DDA3937_RS04705 0.46 -0.4
1,037,365 + DDA3937_RS04705 0.56 -1.2
1,037,365 + DDA3937_RS04705 0.56 +1.2
1,037,366 - DDA3937_RS04705 0.56 -0.6
1,037,580 - DDA3937_RS04705 0.75 -0.9
1,037,580 - DDA3937_RS04705 0.75 -0.0
1,037,648 + DDA3937_RS04705 0.82 -0.8
1,037,648 + DDA3937_RS04705 0.82 -1.0
1,037,649 - DDA3937_RS04705 0.82 -1.0
1,037,652 - DDA3937_RS04705 0.82 -0.3
1,037,652 - DDA3937_RS04705 0.82 -0.7
1,037,674 - DDA3937_RS04705 0.84 +0.8
1,037,700 - DDA3937_RS04705 0.86 -3.7
1,037,708 + DDA3937_RS04705 0.87 +0.5
1,037,738 + DDA3937_RS04705 0.90 -1.0
1,037,738 + DDA3937_RS04705 0.90 -2.1
1,037,738 + DDA3937_RS04705 0.90 +1.0
1,037,759 + -0.3
1,037,759 + -1.3
1,037,760 - +1.0
1,037,802 - -0.2
1,037,842 - +0.6
1,037,858 + -1.2
1,037,924 - +0.5
1,037,969 - +0.3
1,037,988 + -1.0
1,038,265 + +0.6
1,038,272 + -0.4
1,038,272 + -0.6
1,038,273 - -0.6
1,038,273 - -0.7
1,038,273 - -1.7
1,038,273 - +0.5
1,038,273 - -0.6
1,038,274 + -0.6
1,038,274 + -1.6
1,038,274 + -0.9
1,038,274 + +0.8
1,038,274 + +0.1
1,038,274 + -0.0
1,038,275 - +0.1
1,038,275 - -1.1
1,038,278 + -0.8
1,038,278 + -0.6
1,038,278 + -2.1
1,038,278 + -0.2
1,038,278 + -2.4
1,038,279 - +0.6
1,038,339 - +0.7
1,038,354 - DDA3937_RS04710 0.11 -0.6
1,038,355 + DDA3937_RS04710 0.12 -0.4
1,038,355 + DDA3937_RS04710 0.12 -0.5
1,038,355 + DDA3937_RS04710 0.12 -1.1
1,038,355 + DDA3937_RS04710 0.12 +0.4
1,038,355 + DDA3937_RS04710 0.12 -1.2
1,038,356 - DDA3937_RS04710 0.12 -0.1
1,038,356 - DDA3937_RS04710 0.12 -1.8
1,038,356 - DDA3937_RS04710 0.12 -0.3
1,038,356 - DDA3937_RS04710 0.12 +1.0
1,038,494 - DDA3937_RS04710 0.29 -0.6
1,038,506 + DDA3937_RS04710 0.31 -2.3
1,038,506 + DDA3937_RS04710 0.31 -0.2
1,038,506 + DDA3937_RS04710 0.31 +0.4
1,038,507 - DDA3937_RS04710 0.31 -0.7
1,038,507 - DDA3937_RS04710 0.31 -0.2
1,038,507 - DDA3937_RS04710 0.31 +0.5
1,038,507 - DDA3937_RS04710 0.31 -1.4
1,038,507 - DDA3937_RS04710 0.31 -1.1
1,038,508 + DDA3937_RS04710 0.31 -0.2
1,038,509 - DDA3937_RS04710 0.31 -0.1
1,038,659 + DDA3937_RS04710 0.50 +0.3
1,038,797 - DDA3937_RS04710 0.68 -0.8
1,038,820 + DDA3937_RS04710 0.71 -2.0
1,038,821 - DDA3937_RS04710 0.71 +0.4

Or see this region's nucleotide sequence